BAC Information

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BAC

Clone NameB6Ng01-006D09
Chromosome14 (Build37)
Map Location 95,014,802 - 95,137,934
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006D09.bB6Ng01-006D09.g
ACCDH843135DH843136
length1,1271,089
definitionDH843135|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D09, 5' end.DH843136|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,014,802 - 95,015,941)(95,136,838 - 95,137,934)
sequence
gaattcaattttcatctcagggatatattctttattacttgaaaaaatac
ataatataattatactcgttcaaattttattttcaattttcctatgatat
catgaattatatatgaaagtttgggtagagaaaatttggaaaagtggctg
tctagaattatttaccctgaagagatcaatcagtattgctgctctgtggg
tgtgttctgtcaggttaaccacattcataaatcagtttagggaaataaag
tagaactatccactcaaggatacaaacagtgaaatgttacagataaagga
caccaaatccatgaggtctgtataacagtatataaaaatggggagcaatg
catataaagtcatgaacagatgggactcagggaaactatcatgttgctgc
ttcagaagctgttttggttgaagtgatcttcactaccttttttttttaaa
tcttggtcatggattcctaacatttccttaaaaagctggatgcagcagca
tgcacctgtaagcccagagctggaagagaacaaaaagacagttgtcatgg
acttcagtctcctccaaacatgtgcatagacagaaatgagtaaaaacaca
ccacacgcaaatagcatgtgcatgctcacacacatcacatgtgcctataa
ggaaaacactttaataaagtcatgtacttcaaatcttaaataaaagtatt
ttctttgtgcttcctaaaagctaaaaatatgatgagttatctatcagctt
tactaaataaactgatatatctctgatgctttgaagatgttggtaatttt
ttaagacaataataaatggaaagatggaatttttttgtgtttgcaggtat
ggcgctgtgtttcctatatcagaaaaggtatagaaacctaagcccaactg
caccaaaatgggcaaaactttctacaacttgccaattttttgctcctgag
aacaaatgcaaaaaaacaataaggaacatttctcctgtttcagcactttt
tatttactgactgatttatcagaaaaaaaaaatacatgatttctgctcag
ctttaatagtccaactcttttatgcataattacttcctggagtatctgac
taaatctatcacgttacattacttatt
gaattctctcctttcttgttatcattttattaagtcaagccaacagtttt
cacatttgtttaaacctcaaaggcttcggtttcagagctgtggatctagg
ccagggccttggatgcgggaagcgcgcttgaccagcagtcctcacttcag
aaatgatttaagctcgggaggctgttcattacaacgtgcttttctttaca
tttttatttatttatttttttatttccagaagtattaacttagtaatgaa
ttttttattattaaaaagcaaatatacagactgagttaagaagtgaaata
atacagaaaaaagaacttacacattaaattaaattcctcagattgaatat
tctcctacttcttcctcgttcctgggagagcaacaaaaaagacagaacta
cttctcaacacacatacacagacaatagagaggggaaaggtttcgaagtg
ccacacataattctccacatactggtatatactcgatgttctttagaaca
aagtgaagcaagttatgcataaataaaccactataaatggtggaaattag
atcactacaaaataaggaaagagtcaaaagcaggggataaaaattctaag
tggacagacatccaactttaaagagatcttgactttttttattttttatt
tattttttattagatattctcttcatttacatttcaaatgctatcccttt
tcctagtttcctctccaaaaatcccctataccctccgcctgccctgctcc
ccaacacacctactccctcctcctggccctggcattcccctttactgggg
catatgatcttcacaagaccaagggcctctcttctcaatgatggccgact
aggccatcctctgctacatatgcaactagagacatgagatctggggggat
actggttagctcatattgttccacctatagggtgcagatctctttagctc
ctgggtactttctctagctcttccatttggggccctgtgttcatcatagc
ggactgtgagaatccacttctgtattgccagccactgacatagcctcaca
agagatagtttatatcagtctgtcagcacaatctttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_95014802_95015941
seq2: B6Ng01-006D09.b_42_1168

seq1  GAATTCAATTTTCATCTCAGGGATATATTCTTTATTACTTGAAAAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTCATCTCAGGGATATATTCTTTATTACTTGAAAAAATAC  50

seq1  ATAATATAATTATACTCGTTCAAATTTTATTTTCAATTTTCCTATGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAATTATACTCGTTCAAATTTTATTTTCAATTTTCCTATGATAT  100

seq1  CATGAATTATATATGAAAGTTTGGGTAGAGAAAATTTGGAAAAGTGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTATATATGAAAGTTTGGGTAGAGAAAATTTGGAAAAGTGGCTG  150

seq1  TCTAGAATTATTTACCCTGAAGAGATCAATCAGTATTGCTGCTCTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATTATTTACCCTGAAGAGATCAATCAGTATTGCTGCTCTGTGGG  200

seq1  TGTGTTCTGTCAGGTTAACCACATTCATAAATCAGTTTAGGGAAATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGTCAGGTTAACCACATTCATAAATCAGTTTAGGGAAATAAAG  250

seq1  TAGAACTATCCACTCAAGGATACAAACAGTGAAATGTTACAGATAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATCCACTCAAGGATACAAACAGTGAAATGTTACAGATAAAGGA  300

seq1  CACCAAATCCATGAGGTCTGTATAACAGTATATAAAAATGGGGAGCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATCCATGAGGTCTGTATAACAGTATATAAAAATGGGGAGCAATG  350

seq1  CATATAAAGTCATGAACAGATGGGACTCAGGGAAACTATCATGTTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAGTCATGAACAGATGGGACTCAGGGAAACTATCATGTTGCTGC  400

seq1  TTCAGAAGCTGTTTTGGTTGAAGTGATCTTCACTACCTTTTTTTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGCTGTTTTGGTTGAAGTGATCTTCACTACCTTTTTTTTTTAAA  450

seq1  TCTTGGTCATGGATTCCTAACATTTCCTTAAAAAGCTGGATGCAGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCATGGATTCCTAACATTTCCTTAAAAAGCTGGATGCAGCAGCA  500

seq1  TGCACCTGTAAGCCCAGAGCTGGAAGAGAACAAAAAGACAGTTGTCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTGTAAGCCCAGAGCTGGAAGAGAACAAAAAGACAGTTGTCATGG  550

seq1  ACTTCAGTCTCCTCCAAACATGTGCATAGACAGAAATGAGTAAAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTCTCCTCCAAACATGTGCATAGACAGAAATGAGTAAAAACACA  600

seq1  CCACACGCAAATAGCATGTGCATGCTCACACACATCACATGTGCCTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGCAAATAGCATGTGCATGCTCACACACATCACATGTGCCTATAA  650

seq1  GGAAAACACTTTAATAAAGTCATGTACTTCAAATCTTAAATAAAAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACACTTTAATAAAGTCATGTACTTCAAATCTTAAATAAAAGTATT  700

seq1  TTCTTTGTGCTTCCTAAAAGCTAAAAATATGATGAGTTATCTATCAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGCTTCCTAAAAGCTAAAAATATGATGAGTTATCTATCAGCTT  750

seq1  TACTAAATAAACTGATATATCTCTGATGCTTTGAAGATGTTGGTAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATAAACTGATATATCTCTGATGCTTTGAAGATGTTGGTAATTTT  800

seq1  TTAAGACAATAATAAATGGAAAGATGGAATTTTTTTGTGTTTGCAGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAATAATAAATGGAAAGATGGAATTTTTTTGTGTTTGCAGGTAT  850

seq1  GGCGCTGTGTTTCCTATATCAGAAAAGGTATAGAAACCTAAGCCCAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGTGTTTCCTATATCAGAAAAGGTATAGAAACCTAAGCCCAACTG  900

seq1  CACCAAAATGGGCAAAACTTTCTACAACTTGCCAATTTTTTGCTCCTGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACCAAAATGGGCAAAACTTTCTACAACTTGCCAATTTTTTGCTCCTG-A  949

seq1  GAACAAATGCAAAAAAAACAATAAGGGAACATTTCTCCTGTTTTCAGCAC  1000
      |||||||||| ||||||||||||| ||||||||||||||| |||||||||
seq2  GAACAAATGC-AAAAAAACAATAA-GGAACATTTCTCCTG-TTTCAGCAC  996

seq1  TTTTTATTTACTGACTGATTTATCAGAAAAAAAAAATACATGATTTCTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTACTGACTGATTTATCAGAAAAAAAAAATACATGATTTCTGC  1046

seq1  TCAGCTTGTATATAGTCCAAACTCTTTTATGCATAATTACTATCCTGGAG  1100
      ||||||| || ||||||| |||||||||||||||||||||| ||||||||
seq2  TCAGCTT-TA-ATAGTCC-AACTCTTTTATGCATAATTACT-TCCTGGAG  1092

seq1  TTATCTTGTACTAAATCTATTCACAGTTACATTACTTATT  1140
       |||||   |||||||||| |||| |||||||||||||||
seq2  -TATCT--GACTAAATCTA-TCAC-GTTACATTACTTATT  1127

seq1: chr14_95136838_95137934
seq2: B6Ng01-006D09.g_67_1155 (reverse)

seq1  CAAAAAGATTGTGCTGACAGGACCCTGATAT-AACTATCTCTTGTGAGGC  49
      ||||||||||||||||||||    ||||||| ||||||||||||||||||
seq2  CAAAAAGATTGTGCTGACAG---ACTGATATAAACTATCTCTTGTGAGGC  47

seq1  TATGTCAGTGCCTGGCAAATACAGAAGTGGATTCTCACAGTCCGCTATTG  99
      |||||||||| ||||| |||||||||||||||||||||||||||||||  
seq2  TATGTCAGTGGCTGGC-AATACAGAAGTGGATTCTCACAGTCCGCTAT--  94

seq1  GATGGAACACAGGGCCCCAAATGGAAGAGCTAGAGAAAGTACCCAAGGAG  149
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAT-GAACACAGGGCCCCAAATGGAAGAGCTAGAGAAAGTACCC-AGGAG  142

seq1  CTAAAGAGATCTGCAACCCTATAGGTGGAACAATATGAGCTAACCAGTAT  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGATCTGC-ACCCTATAGGTGGAACAATATGAGCTAACCAGTAT  191

seq1  CCCCCCAGATCTCATGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGATCTCATGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAG  241

seq1  TCGGCCATCATTGAGAAGAGAGGCCCTTGGTCTTGTGAAGATCATATGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCATCATTGAGAAGAGAGGCCCTTGGTCTTGTGAAGATCATATGCC  291

seq1  CCAGTAAAGGGGAATGCCAGGGCCAGGAGGAGGGAGTAGGTGTGTTGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAAGGGGAATGCCAGGGCCAGGAGGAGGGAGTAGGTGTGTTGGGG  341

seq1  AGCAGGGCAGGCGGAGGGTATAGGGGATTTTTGGAGAGGAAACTAGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCAGGCGGAGGGTATAGGGGATTTTTGGAGAGGAAACTAGGAAA  391

seq1  AGGGATAGCATTTGAAATGTAAATGAAGAGAATATCTAATAAAAAATAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGCATTTGAAATGTAAATGAAGAGAATATCTAATAAAAAATAAA  441

seq1  TAAAAAATAAAAAAAGTCAAGATCTCTTTAAAGTTGGATGTCTGTCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAAAAAAGTCAAGATCTCTTTAAAGTTGGATGTCTGTCCACT  491

seq1  TAGAATTTTTATCCCCTGCTTTTGACTCTTTCCTTATTTTGTAGTGATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTTATCCCCTGCTTTTGACTCTTTCCTTATTTTGTAGTGATCT  541

seq1  AATTTCCACCATTTATAGTGGTTTATTTATGCATAACTTGCTTCACTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCACCATTTATAGTGGTTTATTTATGCATAACTTGCTTCACTTTG  591

seq1  TTCTAAAGAACATCGAGTATATACCAGTATGTGGAGAATTATGTGTGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGAACATCGAGTATATACCAGTATGTGGAGAATTATGTGTGGCA  641

seq1  CTTCGAAACCTTTCCCCTCTCTATTGTCTGTGTATGTGTGTTGAGAAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAAACCTTTCCCCTCTCTATTGTCTGTGTATGTGTGTTGAGAAGTA  691

seq1  GTTCTGTCTTTTTTGTTGCTCTCCCAGGAACGAGGAAGAAGTAGGAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTTTTTTGTTGCTCTCCCAGGAACGAGGAAGAAGTAGGAGAAT  741

seq1  ATTCAATCTGAGGAATTTAATTTAATGTGTAAGTTCTTTTTTCTGTATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCTGAGGAATTTAATTTAATGTGTAAGTTCTTTTTTCTGTATTA  791

seq1  TTTCACTTCTTAACTCAGTCTGTATATTTGCTTTTTAATAATAAAAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTCTTAACTCAGTCTGTATATTTGCTTTTTAATAATAAAAAATT  841

seq1  CATTACTAAGTTAATACTTCTGGAAATAAAAAAATAAATAAATAAAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTAAGTTAATACTTCTGGAAATAAAAAAATAAATAAATAAAAATG  891

seq1  TAAAGAAAAGCACGTTGTAATGAACAGCCTCCCGAGCTTAAATCATTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGCACGTTGTAATGAACAGCCTCCCGAGCTTAAATCATTTCT  941

seq1  GAAGTGAGGACTGCTGGTCAAGCGCGCTTCCCGCATCCAAGGCCCTGGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGACTGCTGGTCAAGCGCGCTTCCCGCATCCAAGGCCCTGGCC  991

seq1  TAGATCCACAGCTCTGAAACCGAAGCCTTTGAGGTTTAAACAAATGTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCACAGCTCTGAAACCGAAGCCTTTGAGGTTTAAACAAATGTGAA  1041

seq1  AACTGTTGGCTTGACTTAATAAAATGATAACAAGAAAGGAGAGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGGCTTGACTTAATAAAATGATAACAAGAAAGGAGAGAATTC  1089