BAC Information

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BAC

Clone NameB6Ng01-006G04
Chromosome14 (Build37)5 (Build37)
Map Location 102,356,531 - 102,357,41618,084,576 - 18,084,912
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795
Downstream geneLOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G04.bB6Ng01-006G04.g
ACCDH843260DH843261
length931967
definitionDH843260|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G04, 5' end.DH843261|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,356,531 - 102,357,416)(18,084,576 - 18,084,912)
sequence
gaattcagacacctgtactgacagcggagtcagaagtactgggcctgcat
ccaagcatcttacagtcagtgtttgtgtattggatcacagggttatgctt
tttacagaggagggaatgggaaaatttgggaacctaatttctagaaccag
attgccagaaagatgtgctcctgagcgtagacatcatagaggtatagctg
cagtgtcatgttggacaaagttgatagaaaactgtggacctctgtggttt
ttggaaaagaactgcaacaataaaaatatggctggtaaatgaactgatct
tgggaagtaaattttgaggacatttggggtaaattgtgagaccagagatc
tgaaggatgtgttagacacagagagagggattggattttttttttccatt
ttttattaggtatttagctcatttacatttccaatgctataccaaaagtc
ccccatacccacccactcccactcccctacccacccactccccctttttg
gccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgg
gcctctctttccagtgatggccgactaggccatcttttgatacatatgca
gctagagtcaagagctccggggtactggttagttcataatgttgttccac
ctatagggttgcagatccctttagctccttgggtactttctctagctcct
ccattgggagccctgtgatccatccattagctgactgtgagcatccactt
ctgtgtttgctaggccccggcatagtctcacaagagacagctatatctgg
gtcctttcaataaaatcttgctagtgtatgcaatggtgtcagcgtttgga
tgctgattatggggtggatccctggatatggcagtctctacatggtccat
cctttcatctcagctccaaactttgtctctg
gaattcttttgcttggcctcaaactcatagtagcaatctgttctaatcat
ctagttccttctcattccctggctcattctttttttttccccaatttttt
attaggtatttactttatttacatttcaaatgctatcccaaaagtcccct
atacccctcccccactcccttacccacccactcccacttcttggccctgg
cattctcctgtactggggcataaaagtttgcaagaccaaggggcctctct
tcccaatgagggccgactaggccatcttctgctacatatgcagcagagac
acgagctccggggggtactggttagttcataatgttgttctgcctatagt
gctgcagatcccttcagctccttgggtactttctctagctcctccattgg
gggctctgtgttccatccattagctgactgtgagcatccacttctgtgtt
tgccaggcactggcatagtctcacaagagacagctatctatatcagggtt
ctttcagcaaaatcttgctggtgtatgcaatagtgtctgcgtttggtggc
tgattatggtatgaaccctgggtggggcagtctctggatagttcatcctt
tcatctcagctccaaactttgtctctgtaactccttccatgggtgttttg
ttctcaattctaagaaggggaaaagtgtccacactttggtctttgttctt
cttgagtttcatgtgtttctcaaattgtatcttgggtattctaagtttct
gggctaatatccatttatcagtgagtgcatatcatgtgagttcttttgtg
attgggttacctcactcaggatgatactctccacttcacaccagtcagaa
tggataagatcaaaaatgcacagacatggcgaggatgtggagaagaggac
actcctccattgtggtgggattgcaagcttgtacacactctggaaatcag
tctggtgctcctcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102356531_102357416
seq2: B6Ng01-006G04.b_47_932

seq1  GAATTCAGACACCTGTACTGACAGCGGAGTCAGAAGTACTGGGCCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACACCTGTACTGACAGCGGAGTCAGAAGTACTGGGCCTGCAT  50

seq1  CCAAGCATCTTACAGTCAGTGTTTGTGTATTGGATCACAGGGTTATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCTTACAGTCAGTGTTTGTGTATTGGATCACAGGGTTATGCTT  100

seq1  TTTACAGAGGAGGGAATGGGAAAATTTGGGAACCTAATTTCTAGAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAGGAGGGAATGGGAAAATTTGGGAACCTAATTTCTAGAACCAG  150

seq1  ATTGCCAGAAAGATGTGCTCCTGAGCGTAGACATCATAGAGGTATAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGAAAGATGTGCTCCTGAGCGTAGACATCATAGAGGTATAGCTG  200

seq1  CAGTGTCATGTTGGACAAAGTTGATAGAAAACTGTGGACCTCTGTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATGTTGGACAAAGTTGATAGAAAACTGTGGACCTCTGTGGTTT  250

seq1  TTGGAAAAGAACTGCAACAATAAAAATATGGCTGGTAAATGAACTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGAACTGCAACAATAAAAATATGGCTGGTAAATGAACTGATCT  300

seq1  TGGGAAGTAAATTTTGAGGACATTTGGGGTAAATTGTGAGACCAGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAAATTTTGAGGACATTTGGGGTAAATTGTGAGACCAGAGATC  350

seq1  TGAAGGATGTGTTAGACACAGAGAGAGGGATTGGATTTTTTTTTTCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATGTGTTAGACACAGAGAGAGGGATTGGATTTTTTTTTTCCATT  400

seq1  TTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTC  450

seq1  CCCCATACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTG  500

seq1  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG  550

seq1  GCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCA  600

seq1  GCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCAC  650

seq1  CTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCT  700

seq1  CCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTT  750

seq1  CTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGG  800

seq1  GTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGA  850

seq1  TGCTGATTATGGGGTGGATCCCTGGATATGGCAGTC  886
      ||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTATGGGGTGGATCCCTGGATATGGCAGTC  886

seq1: chr5_18084576_18084912
seq2: B6Ng01-006G04.g_181_515 (reverse)

seq1  AAACACATAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGTC  50
      ||||||| ||||||||||||||||||||||| |||||||| ||||| | |
seq2  AAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGAACACAGAGCC  50

seq1  CCCAATGGGGGAGCTAGAGAAAGTACCCAAGAAGCTAAAGGGGTCTGCAA  100
      |||||||| |||||||||||||||||||||| |||| ||||| |||||| 
seq2  CCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGATCTGCAG  100

seq1  CCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTCA  150
      | |||||||  |||||||| |||||||||||||||||||||| |||||| 
seq2  CACTATAGGCAGAACAACATTATGAACTAACCAGTACCCCCCGGAGCTCG  150

seq1  TGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCATTGG  200
      ||||||| |||||||||||| || |||||||||||||||||| |||||||
seq2  TGTCTCT-GCTGCATATGTAGCAGAAGATGGCCTAGTCGGCCCTCATTGG  199

seq1  GAAGAGAGGCCCCTTGTTCTTGCAAACTTTATATGCCTCAGTACAGGGGA  250
      |||||||||||||||| ||||||||||||| |||||| ||||||||| ||
seq2  GAAGAGAGGCCCCTTGGTCTTGCAAACTTT-TATGCCCCAGTACAGGAGA  248

seq1  ACGCCAGAGCCAAGAAGTGGGAGTTGGTGGGCAGGGGAGTGGGGGGAGGG  300
      | ||||| |||||||||||||||| |||||| | |||||||||||  |||
seq2  ATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAAGGGAGTGGGGGAGGGG  298

seq1  TATGGGGGACTTTTGGGGTAGCATTGGAAATGTAAAT  337
      ||| ||||||||||||| ||||||| |||||||||||
seq2  TATAGGGGACTTTTGGGATAGCATTTGAAATGTAAAT  335