BAC Information

Click to search

BAC

Clone NameB6Ng01-006N18
Chromosome1 (Build37)14 (Build37)
Map Location 5,499,723 - 5,500,41453,397,374 - 53,398,050
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
Downstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N18.bB6Ng01-006N18.g
ACCDH843598DH843599
length1,098677
definitionDH843598|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N18, 5' end.DH843599|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,499,723 - 5,500,414)(53,397,374 - 53,398,050)
sequence
gaattctggaacaggacaggcaggaaagcggctgaggaaagcaagagctt
gaaagcaggtgtagggaagagtctgctggagaagtctcccgtatacataa
aaactgacgctgcaaacacgagcctggaaggttttgaatatctgattctt
gtcacttgcctttgctaaatactcagccagctgcaagaaggatgagatat
gagcaggtggagatcttcaaaggaggagggaacactagtgagtgcagcag
cgccctctggaggccacatgaggaaacaaatgtcttgagggtccacagtt
tgcctcctgctgtgtttccatttcagagacatggaaaactttgacaaagc
agattgtagtgctgccattacatcttgggacaaataagacacaaaaggtt
aggattttagtagttgtactggctagttttgtgtcaacttgacacagctg
gagttatcacagaaaaaggagcttcagttgagaaaatgcctccaggagct
ccaactgtaaggcattttctcaattagtgatcaagggggaaaggcccctt
gttggtgggaatatctctgggctggtagtctttggttttacaagagagca
ggctgagcaagccaggggaagcaagccagtaaagaacatccctccatggc
ctctgcatcagctcctgcttcctgccctgctggagttacagtcctgactt
ccttggtgatgagcagcagtatggaagtgtaagctgaataaaccctttcc
tcccaaacttgtttcttggtcatgatgttttgtgcaggaatagaaaccct
gactaagacaaattggtaccagcagagtggggtattcctgtgacaacctg
actgtgttttagggaggactgtgcaaggactttggaactttgggcttgaa
gatccatttgttgttaagagctctgtcagatgttgtgtaggagcttggag
ataatgttgagaacagtgtagagatggagtctggcttgtgaaatttcaga
gggacataaagacttttcaagttcattgctattttcgaattgtgacattc
tgtgggtctggttagctggggctgagaatcagctggataacaagatac
gaattctgacctgactcacacgtctgtttcactttaaactggaaccagag
ttgataaactcctaagtcacaggtcaggattttttttttaactaatggcc
ttgcttgaccattggtcatcacagagaggaagaaagtcattcggagtggg
ggttgccctatcaccctccagctgcataatgctagtttctctagcaccca
caactgacctggaaccccttggctgattcctggaaaggcagggaaagaaa
gactcagaactcttctaggcccttatggatgcaaacaattccctcactcc
acccttataaggagtcactgccagcctttccccacacccacaattttcta
tgggagactgtcctttactgttttggaataaacagtccagtctgtagaca
tcagcccctagtgtctttttctgccttctgtctccctccactgcttcaga
aatctaacaagagttcagtaagggaagagactacaacagcattgcgttcc
agtggtgcacactgctcaccactgcaagctatgccttcttagcaagaaga
tggggccaccagcagatgtcagggttcctcttcctcagatcttgactcag
actcagaaggtaattacaagccttccttggtttgaaatcagagagatgga
agagaggagggaggaggagagatggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_5499723_5500414
seq2: B6Ng01-006N18.b_463_1146 (reverse)

seq1  GTATCTTGTTAATCACAGCTGATTCTTCAGCCCCAGCTAACCAGAACCAC  50
      |||||||||| ||| |||||||||| ||||||||||||||||||| ||||
seq2  GTATCTTGTT-ATC-CAGCTGATTC-TCAGCCCCAGCTAACCAGACCCAC  47

seq1  AGAATCTTCACAAT--CAAAACAGCAATGACCCTGAAAAGAGTCTTTAAT  98
      |||||  |||||||   |||| |||||||| | |||||  ||||||||  
seq2  AGAAT-GTCACAATTCGAAAATAGCAATGAACTTGAAA--AGTCTTTA--  92

seq1  TTTCCCTCTGAAATTTCACAAACCAGACCTCCATCTTCTGCACTGTTCTC  148
      | ||||||||||||||||||| ||||| ||||||| ||| ||||||||||
seq2  TGTCCCTCTGAAATTTCACAAGCCAGA-CTCCATC-TCTACACTGTTCTC  140

seq1  AACATTATCTTCCAAGCTCCTACACAACATCTGACAGAGCTCTTAACAAC  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATC-TCCAAGCTCCTACACAACATCTGACAGAGCTCTTAACAAC  189

seq1  GAATGGATCTTCAAGCCCAAAGTTCCAAAGTCCTTCCACAGTCCTCCCCA  248
       |||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  AAATGGATCTTCAAGCCCAAAGTTCCAAAGTCCTTGCACAGTCCTCCCTA  239

seq1  AAACATGATCAGGTTGTCACAGGAATACCCCACTCTGCTGGTACCAATTT  298
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGTCAGGTTGTCACAGGAATACCCCACTCTGCTGGTACCAATTT  289

seq1  GTCTTAGTCAGGGTTTCTATTCCTGCAC-AAACATCATGACCAAGAAGCA  347
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GTCTTAGTCAGGGTTTCTATTCCTGCACAAAACATCATGACCAAGAAACA  339

seq1  AGTTGGGGAGGAAAGGGCTTATTCAGCTTACACTTCCATACTGCTGTTCA  397
      |||| |||||||||||| |||||||||||||||||||||||||||| |||
seq2  AGTTTGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGCTCA  389

seq1  TCACTAAAGAAGTCAGGACTGGAACTCAAGCATGTCAGGAAGCAGGAGCT  447
      |||| || ||||||||||||| ||||| |||| | |||||||||||||||
seq2  TCACCAAGGAAGTCAGGACTGTAACTCCAGCAGGGCAGGAAGCAGGAGCT  439

seq1  GATGCAGAGGCCATGGAGGGATGTTCATTACTGGCTTGCCTCCCCTGGCT  497
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCT  489

seq1  TGCTCATCCTGCTCTCTTATAGAACCCAAGACTGCCAGTCCAGAGATGGT  547
      |||||| ||||||||||| || |||| |||||| |||| ||||||||  |
seq2  TGCTCAGCCTGCTCTCTTGTAAAACCAAAGACTACCAGCCCAGAGATATT  539

seq1  CCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCT  597
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCT  589

seq1  TACAGCTGGATCTCATGGAGGCATTTCCTCAAATGAAGCTCCTTTCTCTG  647
      ||||| |||| ||| ||||||||||| ||||| |||||||||||| ||||
seq2  TACAGTTGGAGCTCCTGGAGGCATTTTCTCAACTGAAGCTCCTTTTTCTG  639

seq1  AGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA  692
       ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA  684

seq1: chr14_53397374_53398050
seq2: B6Ng01-006N18.g_68_744

seq1  GAATTCTGACCTGACTCACACGTCTGTTTCACTTTAAACTGGAACCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCTGACTCACACGTCTGTTTCACTTTAAACTGGAACCAGAG  50

seq1  TTGATAAACTCCTAAGTCACAGGTCAGGATTTTTTTTTTAACTAATGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAACTCCTAAGTCACAGGTCAGGATTTTTTTTTTAACTAATGGCC  100

seq1  TTGCTTGACCATTGGTCATCACAGAGAGGAAGAAAGTCATTCGGAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGACCATTGGTCATCACAGAGAGGAAGAAAGTCATTCGGAGTGGG  150

seq1  GGTTGCCCTATCACCCTCCAGCTGCATAATGCTAGTTTCTCTAGCACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCCTATCACCCTCCAGCTGCATAATGCTAGTTTCTCTAGCACCCA  200

seq1  CAACTGACCTGGAACCCCTTGGCTGATTCCTGGAAAGGCAGGGAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGACCTGGAACCCCTTGGCTGATTCCTGGAAAGGCAGGGAAAGAAA  250

seq1  GACTCAGAACTCTTCTAGGCCCTTATGGATGCAAACAATTCCCTCACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAACTCTTCTAGGCCCTTATGGATGCAAACAATTCCCTCACTCC  300

seq1  ACCCTTATAAGGAGTCACTGCCAGCCTTTCCCCACACCCACAATTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATAAGGAGTCACTGCCAGCCTTTCCCCACACCCACAATTTTCTA  350

seq1  TGGGAGACTGTCCTTTACTGTTTTGGAATAAACAGTCCAGTCTGTAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACTGTCCTTTACTGTTTTGGAATAAACAGTCCAGTCTGTAGACA  400

seq1  TCAGCCCCTAGTGTCTTTTTCTGCCTTCTGTCTCCCTCCACTGCTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCTAGTGTCTTTTTCTGCCTTCTGTCTCCCTCCACTGCTTCAGA  450

seq1  AATCTAACAAGAGTTCAGTAAGGGAAGAGACTACAACAGCATTGCGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAACAAGAGTTCAGTAAGGGAAGAGACTACAACAGCATTGCGTTCC  500

seq1  AGTGGTGCACACTGCTCACCACTGCAAGCTATGCCTTCTTAGCAAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCACACTGCTCACCACTGCAAGCTATGCCTTCTTAGCAAGAAGA  550

seq1  TGGGGCCACCAGCAGATGTCAGGGTTCCTCTTCCTCAGATCTTGACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCACCAGCAGATGTCAGGGTTCCTCTTCCTCAGATCTTGACTCAG  600

seq1  ACTCAGAAGGTAATTACAAGCCTTCCTTGGTTTGAAATCAGAGAGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGGTAATTACAAGCCTTCCTTGGTTTGAAATCAGAGAGATGGA  650

seq1  AGAGAGGAGGGAGGAGGAGAGATGGTT  677
      |||||||||||||||||||||||||||
seq2  AGAGAGGAGGGAGGAGGAGAGATGGTT  677