BAC Information

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BAC

Clone NameB6Ng01-007J22
Chromosome14 (Build37)
Map Location 117,859,647 - 117,993,564
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007J22.bB6Ng01-007J22.g
ACCDH844133DH844134
length1,2071,063
definitionDH844133|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J22, 5' end.DH844134|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,859,647 - 117,860,890)(117,992,478 - 117,993,564)
sequence
gaattcaatagtcttgcattttggcaataattttatctctgtgaaatagg
gcagctaatcaaactcagactcctgcctaggcaatggtatagaaatctgt
gtttcctgactttcgctagaaaaacaagacaagtttattgtatgatttgt
tttctaatatttaagatcttattcttatgagaaattataaatattatatg
ctagcactattgacattctcacaataactcaagttaatgaaacctaataa
cttgcttgtgaggacaaggcaaaataactggaactactgtcagatgtcag
aattgctttagccttttccataaatcacggtgggagtatcattatcatac
gtgattaatggcacttcacgtggtgaatctgattactgctacaaaacaaa
gaaaataaagaggaaatcactcatgaacatcttacatggagaggttgcca
ttctcttccacattaccataatttgattactcagcgagtctgttagacac
aattcattgaaacctgtagagaccttactgatttctatgatgatgttcat
ctcttccataaatactgccaagcttgtagtctctcttttgcctcctgctt
ccttacttaggaacttttcacagtaatagacttcttggtgctaagaagca
atctttacttgttattacccaagggaagaactggacttcacacaaacctg
ctcattttttttcttttagtgagctctaagtccctagagctattgtccct
atattgaatgaatttatatctttcatttgaattccagtgttaaaaattat
cttccagtaaaagatggcatatcctatggatggagaaatggcccactaac
tgctcttctcttctatttcaatttttaaaaatgtcttcatttactttttg
ataattccattcactatactttgattatggtctttcccatctcctaactc
tcttagtcctctctgctcttactacccatgttgactatggagtcatttgg
tgttgacatactacttctggagcatggggaaatcctgggagggtgctgat
acagccatatcattcactggaagtaaatgctgtcttctttgtggacctat
cagtataagaatctggctagaggtgggaactcgccactcctttcctagct
gagaatggctgctaagcttgagtctgagtctagtctctggggttcatgtg
catcatc
gaattcatatatcttttacaattcctaccaatcctctatagtagatattt
taaactgatattcatcatggtcacattttctttattacactgtcatttct
cagcctccagactcaattgcccaaataagagtaacattcatagagacaca
cttcattgctatatacaggaccaaggggagatgctcatataaagatgagt
gttcagagaactcctgatagtagtgttattcaaggccacagctatatgta
gaggtggccattgtatgtgctggtctcaagagatttcagtctttgctgac
atccacagacacaaggctcacccttgcttatttatacaagtttcagtttt
gtcaaccaagtgtataaacttggtttaaaattacaattttgaacacattg
tttcaaatgcagaaaaatcaagctattagtgccttgaaagaaatcaagtt
gcatcactttgacatgtaaaatgtataccgatcatctataaatatttgtt
tagtcattctcccagatctcagaaaatatactcagatacatataggaaga
tctctaacatgatgcgtttatcagaagaatgaaagtactcaaaatacagt
gcaaccatgctcactgtgactgctaacagcattcagccatgttcactgtg
actgctgatggtgggaacccattcactgtgactgctgatggtcagcatat
ggtataaacccagtgaccactagtgaaaggatgggtgaagatgatgtggt
agagggaaataatacatagccatttgttaccacatagatgaatctagaaa
tgactctgttcagtaaagtatgccatcaaagaacaaaacaactacaacag
gaagacaatagaccagccatctaaaaataggaaaggacaaacatataacc
agaatcacacatcactaaaagcacacctcccatacactccccctccccag
aaagaaactcataaacaaacaaactcaaacctcccactgaacctaatcta
agtgggtgctcaaatcccatggatcgagatgaaaaaaaccaacccggctg
tgaggaggttcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117859647_117860890
seq2: B6Ng01-007J22.b_45_1251

seq1  GAATTCAATAGTCTTGCATTTTGGCAATAATTTTATCTCTGTGAAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTCTTGCATTTTGGCAATAATTTTATCTCTGTGAAATAGG  50

seq1  GCAGCTAATCAAACTCAGACTCCTGCCTAGGCAATGGTATAGAAATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAATCAAACTCAGACTCCTGCCTAGGCAATGGTATAGAAATCTGT  100

seq1  GTTTCCTGACTTTCGCTAGAAAAACAAGACAAGTTTATTGTATGATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGACTTTCGCTAGAAAAACAAGACAAGTTTATTGTATGATTTGT  150

seq1  TTTCTAATATTTAAGATCTTATTCTTATGAGAAATTATAAATATTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATATTTAAGATCTTATTCTTATGAGAAATTATAAATATTATATG  200

seq1  CTAGCACTATTGACATTCTCACAATAACTCAAGTTAATGAAACCTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTATTGACATTCTCACAATAACTCAAGTTAATGAAACCTAATAA  250

seq1  CTTGCTTGTGAGGACAAGGCAAAATAACTGGAACTACTGTCAGATGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTGAGGACAAGGCAAAATAACTGGAACTACTGTCAGATGTCAG  300

seq1  AATTGCTTTAGCCTTTTCCATAAATCACGGTGGGAGTATCATTATCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTAGCCTTTTCCATAAATCACGGTGGGAGTATCATTATCATAC  350

seq1  GTGATTAATGGCACTTCACGTGGTGAATCTGATTACTGCTACAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATGGCACTTCACGTGGTGAATCTGATTACTGCTACAAAACAAA  400

seq1  GAAAATAAAGAGGAAATCACTCATGAACATCTTACATGGAGAGGTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGAGGAAATCACTCATGAACATCTTACATGGAGAGGTTGCCA  450

seq1  TTCTCTTCCACATTACCATAATTTGATTACTCAGCGAGTCTGTTAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCACATTACCATAATTTGATTACTCAGCGAGTCTGTTAGACAC  500

seq1  AATTCATTGAAACCTGTAGAGACCTTACTGATTTCTATGATGATGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTGAAACCTGTAGAGACCTTACTGATTTCTATGATGATGTTCAT  550

seq1  CTCTTCCATAAATACTGCCAAGCTTGTAGTCTCTCTTTTGCCTCCTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCATAAATACTGCCAAGCTTGTAGTCTCTCTTTTGCCTCCTGCTT  600

seq1  CCTTACTTAGGAACTTTTCACAGTAATAGACTTCTTGGTGCTAAGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTAGGAACTTTTCACAGTAATAGACTTCTTGGTGCTAAGAAGCA  650

seq1  ATCTTTACTTGTTATTACCCAAGGGAAGAACTGGACTTCACACAAACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTTGTTATTACCCAAGGGAAGAACTGGACTTCACACAAACCTG  700

seq1  CTCATTTTTTTTCTTTTAGTGAGCTCTAAGTCCCTAGAGCTATTGTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTTTCTTTTAGTGAGCTCTAAGTCCCTAGAGCTATTGTCCCT  750

seq1  ATATTGAATGAATTTATATCTTTCATTTGAATTCCAGTGTTAAAAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATGAATTTATATCTTTCATTTGAATTCCAGTGTTAAAAATTAT  800

seq1  CTTCCAGTAAAAGATGGCATATCCTATGGATGGAGAAATGGCCCACTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTAAAAGATGGCATATCCTATGGATGGAGAAATGGCCCACTAAC  850

seq1  TGCTCTTCTCTTCTATTTCAATTTTTAAAAATGTCTTCATTTACTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTCTTCTATTTCAATTTTTAAAAATGTCTTCATTTACTTTTTG  900

seq1  ATAATTCCATTCACTATACTTTGATTATGGTCTTTCCCATCTCCTAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAATTCCATTCACTATACTTTGATTATGGTCTTTCCCATCTCCTAACT-  949

seq1  CTCTTAGTTCCTCCTCTGCTCTTTACCTACCCATGTTTGAACTATGGAGT  1000
      ||||||| |||| ||||||||||   |||||||||||   ||||||||||
seq2  CTCTTAG-TCCT-CTCTGCTCTT--ACTACCCATGTT--GACTATGGAGT  993

seq1  CCAATTTGTGTTGACCATAACTACTCCT-GAGCATGGGGACATCCCTGGA  1049
       || || ||||||| ||| |||||| || ||||||||||| ||||  |||
seq2  -CATTTGGTGTTGA-CAT-ACTACTTCTGGAGCATGGGGAAATCCTGGGA  1040

seq1  GTGTGCCTGATACAGCCAATATCATTTCACT-GAAGTAAATTGCTGTTCC  1098
      | ||| ||||||||||| |||||| |||||| |||||||| ||||||  |
seq2  GGGTG-CTGATACAGCC-ATATCA-TTCACTGGAAGTAAA-TGCTGT--C  1084

seq1  TTC-TTGTTGACCTATCAGTTAATAGATTCTTGGCTAGAGGTGGGACTTT  1147
      ||| |||| |||||||||| ||  ||| || |||||||||||||||    
seq2  TTCTTTGTGGACCTATCAG-TATAAGAATC-TGGCTAGAGGTGGGA---A  1129

seq1  CTGGCCACTCCTCTTCTCCATGCTGGAGTTTTGTCTGTGCTAAGCTTGTG  1197
      || ||||||||   | |||  ||| |||  | |    ||||||||||| |
seq2  CTCGCCACTCC---TTTCCTAGCT-GAGAATGG---CTGCTAAGCTTGAG  1172

seq1  CAAGTGTTCTGATGTCATGGTCTCTGTGGGTTCATATGTGCATCATC  1244
             ||||| ||| | ||||||| ||||||  ||||||||||||
seq2  -------TCTGA-GTC-TAGTCTCTG-GGGTTC--ATGTGCATCATC  1207

seq1: chr14_117992478_117993564
seq2: B6Ng01-007J22.g_66_1128 (reverse)

seq1  CCGAACCTCCTCACAGCCCGGGTGTGTTCTCTTCTACTCCGATCCATGAG  50
      |||||||||||||||| ||||||  ||| | |||  || ||||||||| |
seq2  CCGAACCTCCTCACAG-CCGGGTTGGTTTTTTTCATCT-CGATCCATG-G  47

seq1  GATTT-AGACACCACTTATGAATTAGG-TCAGATGTGAGGTTTTGTGGTT  98
      ||||| ||   |||||||   |||||| |||| || ||||||   ||  |
seq2  GATTTGAGCACCCACTTA--GATTAGGTTCAG-TGGGAGGTT---TGAGT  91

seq1  TTGTTTGTTTTATGGGTTTTTCTTTTCTTGTGTGTGTGTGTGTGTATGTG  148
      ||||||| |||||| ||||    |||||   | | | | | ||||||| |
seq2  TTGTTTG-TTTATGAGTTT---CTTTCT--GGGGAGGGGGAGTGTATGGG  135

seq1  TGTGTGTGTTGCTTTTTGTTGTTGTTGTTGTTTTCTTGTTTTATTTTGTT  198
       |   ||| ||||||| |    || |||    |||| ||| ||   ||||
seq2  AG---GTG-TGCTTTTAG----TGATGTGTGATTCTGGTTATA---TGTT  174

seq1  TGTTCTTTTCTATTTTTTG-TTGCTGGTTCTTTTGTCTTCTTGTTGTTGT  247
      ||| |||| |||||||| | | ||||| ||| |||||||| |||||| ||
seq2  TGTCCTTTCCTATTTTTAGATGGCTGG-TCTATTGTCTTCCTGTTGTAGT  223

seq1  TGTTTTGTTCTTTGATGGCATACTTTACTGAACAGAGTCATTTCTAGATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTCTTTGATGGCATACTTTACTGAACAGAGTCATTTCTAGATT  273

seq1  CATCTATGTGGTAACAAATGGCTATGTATTATTTCCCTCTACCACATCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGTGGTAACAAATGGCTATGTATTATTTCCCTCTACCACATCAT  323

seq1  CTTCACCCATCCTTTCACTAGTGGTCACTGGGTTTATACCATATGCTGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCATCCTTTCACTAGTGGTCACTGGGTTTATACCATATGCTGAC  373

seq1  CATCAGCAGTCACAGTGAATGGGTTCCCACCATCAGCAGTCACAGTGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAGTCACAGTGAATGGGTTCCCACCATCAGCAGTCACAGTGAAC  423

seq1  ATGGCTGAATGCTGTTAGCAGTCACAGTGAGCATGGTTGCACTGTATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAATGCTGTTAGCAGTCACAGTGAGCATGGTTGCACTGTATTTT  473

seq1  GAGTACTTTCATTCTTCTGATAAACGCATCATGTTAGAGATCTTCCTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTTCATTCTTCTGATAAACGCATCATGTTAGAGATCTTCCTATA  523

seq1  TGTATCTGAGTATATTTTCTGAGATCTGGGAGAATGACTAAACAAATATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGAGTATATTTTCTGAGATCTGGGAGAATGACTAAACAAATATT  573

seq1  TATAGATGATCGGTATACATTTTACATGTCAAAGTGATGCAACTTGATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGATCGGTATACATTTTACATGTCAAAGTGATGCAACTTGATTT  623

seq1  CTTTCAAGGCACTAATAGCTTGATTTTTCTGCATTTGAAACAATGTGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGGCACTAATAGCTTGATTTTTCTGCATTTGAAACAATGTGTTC  673

seq1  AAAATTGTAATTTTAAACCAAGTTTATACACTTGGTTGACAAAACTGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTAATTTTAAACCAAGTTTATACACTTGGTTGACAAAACTGAAA  723

seq1  CTTGTATAAATAAGCAAGGGTGAGCCTTGTGTCTGTGGATGTCAGCAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATAAATAAGCAAGGGTGAGCCTTGTGTCTGTGGATGTCAGCAAAG  773

seq1  ACTGAAATCTCTTGAGACCAGCACATACAATGGCCACCTCTACATATAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCTCTTGAGACCAGCACATACAATGGCCACCTCTACATATAGC  823

seq1  TGTGGCCTTGAATAACACTACTATCAGGAGTTCTCTGAACACTCATCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTGAATAACACTACTATCAGGAGTTCTCTGAACACTCATCTTT  873

seq1  ATATGAGCATCTCCCCTTGGTCCTGTATATAGCAATGAAGTGTGTCTCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCATCTCCCCTTGGTCCTGTATATAGCAATGAAGTGTGTCTCTA  923

seq1  TGAATGTTACTCTTATTTGGGCAATTGAGTCTGGAGGCTGAGAAATGACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTACTCTTATTTGGGCAATTGAGTCTGGAGGCTGAGAAATGACA  973

seq1  GTGTAATAAAGAAAATGTGACCATGATGAATATCAGTTTAAAATATCTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATAAAGAAAATGTGACCATGATGAATATCAGTTTAAAATATCTAC  1023

seq1  TATAGAGGATTGGTAGGAATTGTAAAAGATATATGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGATTGGTAGGAATTGTAAAAGATATATGAATTC  1063