BAC Information

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BAC

Clone NameB6Ng01-008D03
Chromosome14 (Build37)
Map Location 57,070,681 - 57,183,556
singlet/doubletdoublet
Overlap geneRnf17, Cenpj
Upstream geneDhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
Downstream geneParp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008D03.bB6Ng01-008D03.g
ACCDH844534DH844535
length1,1621,194
definitionDH844534|Mus musculus domesticus DNA, BAC clone: B6Ng01-008D03, 5' end.DH844535|Mus musculus domesticus DNA, BAC clone: B6Ng01-008D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,070,681 - 57,071,648)(57,182,364 - 57,183,556)
sequence
gaattcagtttgcaagaattttattgataacttttatttttgtgtttatc
aggggaaattggtatatagttgctgccatctttctctggtttgggtggaa
ctgacttcataggatccgtttgttaaggagtgatgttgtaaggtctttct
gaaggtctgatattatctggcagtaaatacatccagtcttgggcttgtgt
agatatacagcttattactgcttcaatttaaatgcttcttacatatctgc
tagtttatatcatcttgatttagttttgctaggtcttctatgtctaggaa
tttattcatttcttttaggttttacagttttttttaatataattttcaaa
gtattctatagtgatcctttagatttcactggaatctgtcattacttctg
cctcgtggttcctattgctatgaagagatactatgacaacagcaactctt
atacaggaaagcatttaattgggactggcttacagttcaatggagttcct
actccattgtcatgatagtaggaatcatagcagcacatggacgtatatgg
tgctgcaaaggtagatgagaattctaaatttagattggcaaacagcagaa
agagaatgagaccctgggcctagcttgagcatctgagacctcagagccca
gccccagagatacatcctccagcaaagctatacctactccaacaagacca
catcttctaataatgtcactacatgattagtgtatcaaataggccctatg
gccatattccactccctggccctcatagacttctagccatatcatagtct
ccattgcctatcatagtatcagcactgtttaacggtccaaagttcaaagt
ctttttaaagactcacacaatatcttaacttgtaatcccctgtaaataca
aatgaaaaagcagattagatacttccactataatggcacagatatccatt
accattccaaagagtggaaagggaacatagtgagaatactggatcaaagc
tagtagcaaattcaataagcatattcatgtttgatgtggatttttttcta
tctctactctttcagcttgttgctaaaccacttcttttcttgagctgatc
cacttgcctgtagaacttcctcgacaggattcatggtcttggcatctctc
aatcttgctctc
gaattcaaagaagtggctaataaaaacccactttttaaaaaactggaaca
ggtagggtctggccttatagaaactgatttgtattgttacaggcattgta
tgaccagtcatcttgtttcctccttactcagaatcctccaaagtccaaat
tgtttgtctaatgtgaagtgttaagatgtgtttggtatacatgtacatat
ataatcacaaaatgaagcagttaagataaattcatgtttttcaattgcca
cattgtttggtaagaatgaagttagaaatgggtgatcaaatatcagaaaa
tagtcaatgtcctggtacacctatcctcttaaaaaactccaaggggttgt
cccccactttcttatttgaaatactgatatgatattctttagaagaaatt
agattttagtgttcctgtggcaaatgtttaccacaatggagaaacacccc
aaatgggtgtttaactggcaagctggtagaaacatttagaaggcaaattt
gttcttgtggcgaagagatacattttggggagtctttctctgaaattatt
tgtcagggacaatctgggagggaggatgaagcaatgatcaatgattatgg
gacgtcaggaagcctaacacgactctgattttccgtttaaaagctgaaag
agatccagcagaagaagcaggagcagctgaagaggcagcagctggaacag
ctgcagaggctcatggaggagcaagagaagctgctcaccatggtgtctgc
acagcacgcgtttccaggtaggcgctcctcacacgtggccatcagttaga
atgagacagagtttcatgtgctgcttcttaagtgcttggcagaacagttt
ctacattcctgtcacaggtgggaaactccagcttctttcagggccaggta
gataagtgtgaaacgatgatgtagtcatgcgtggactggaggtgctctag
cgttctggagtgtacgtgctgtacttcaagacattcctcgtatgtacatg
gcactgagggctgaacccagggcctcaacacgcactatgcatgtggctca
ctggattacaaggccctctagcagtcatgatttggggtgaaaatagaata
aaactaatggtatttactggtattcagtcctgctggggcatgaaacgtgt
tcaggcttagtgattaaacagggaaaccatttttctcgactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57070681_57071648
seq2: B6Ng01-008D03.b_268_1207

seq1  TCAATTTAAATGCTTCTTACATATCTGCTAGTTTATATCATCTTGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTAAATGCTTCTTACATATCTGCTAGTTTATATCATCTTGATTTA  50

seq1  GTTTTGCTAGGTCTTCTATGTCTAGGAATTTATTCATTTCTTTTAGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTAGGTCTTCTATGTCTAGGAATTTATTCATTTCTTTTAGGTTT  100

seq1  TACAGTTTTTTTTAATATAATTTTCAAAGTATTCTATAGTGATCCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTTTTTAATATAATTTTCAAAGTATTCTATAGTGATCCTTTAG  150

seq1  ATTTCACTGGAATCTGTCATTACTTCTGCCTCGTGGTTCCTATTGCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTGGAATCTGTCATTACTTCTGCCTCGTGGTTCCTATTGCTATG  200

seq1  AAGAGATACTATGACAACAGCAACTCTTATACAGGAAAGCATTTAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATACTATGACAACAGCAACTCTTATACAGGAAAGCATTTAATTGG  250

seq1  GACTGGCTTACAGTTCAATGGAGTTCCTACTCCATTGTCATGATAGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTACAGTTCAATGGAGTTCCTACTCCATTGTCATGATAGTAGG  300

seq1  AATCATAGCAGCACATGGACGTATATGGTGCTGCAAAGGTAGATGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGCAGCACATGGACGTATATGGTGCTGCAAAGGTAGATGAGAAT  350

seq1  TCTAAATTTAGATTGGCAAACAGCAGAAAGAGAATGAGACCCTGGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTTAGATTGGCAAACAGCAGAAAGAGAATGAGACCCTGGGCCTA  400

seq1  GCTTGAGCATCTGAGACCTCAGAGCCCAGCCCCAGAGATACATCCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCATCTGAGACCTCAGAGCCCAGCCCCAGAGATACATCCTCCAG  450

seq1  CAAAGCTATACCTACTCCAACAAGACCACATCTTCTAATAATGTCACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTATACCTACTCCAACAAGACCACATCTTCTAATAATGTCACTAC  500

seq1  ATGATTAGTGTATCAAATAGGCCCTATGGCCATATTCCACTCCCTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGTGTATCAAATAGGCCCTATGGCCATATTCCACTCCCTGGCCC  550

seq1  TCATAGACTTCTAGCCATATCATAGTCTCCATTGCCTATCATAGTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACTTCTAGCCATATCATAGTCTCCATTGCCTATCATAGTATCAG  600

seq1  CACTGTTTAACGGTCCAAAGTTCAAAGTCTTTTTAAAGACTCACACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTAACGGTCCAAAGTTCAAAGTCTTTTTAAAGACTCACACAATA  650

seq1  TCTTAACTTGTAATCCCCTGTAAATACAAATGAAAAAGCAGATTAGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTTGTAATCCCCTGTAAATACAAATGAAAAAGCAGATTAGATAC  700

seq1  TTCCAACTTATAATGGCACAGGATATCCATTACCATTCCAAAAGAGTGGA  750
      |||||   |||||||||||| |||||||||||||||||| ||||||||||
seq2  TTCCA--CTATAATGGCACA-GATATCCATTACCATTCC-AAAGAGTGGA  746

seq1  AAGGGAACATAGTGAGGAAATACTGGATCAAAAGCTAGGTAGGCAAATTC  800
      ||||||||||||||||  ||||||||||| ||||||| ||| ||||||||
seq2  AAGGGAACATAGTGAG--AATACTGGATC-AAAGCTA-GTA-GCAAATTC  791

seq1  CAAATTAAGCATATCCATGTCTGATGTGAGAATATTTTTCTAATCTCTAA  850
         | ||||||||| ||||| ||||||  | || ||||||| |||||| |
seq2  ---AATAAGCATATTCATGTTTGATGT--GGATTTTTTTCT-ATCTCT-A  834

seq1  CTCCTTTCAGCTTTGTTGTCTACAACACACTTCTTTTTCTTGAGCTGATT  900
      || |||||||| |||||| ||| ||| |||||| |||||||||||||| |
seq2  CT-CTTTCAGC-TTGTTG-CTA-AAC-CACTTC-TTTTCTTGAGCTGA-T  877

seq1  CCAC-TGCCTGTTAGGAGCTTTCTTCAGCAGGTATTCCATGGCTCTGGCA  949
      |||| |||||| ||| |   ||| ||  |||| ||| |||||   |||||
seq2  CCACTTGCCTG-TAGAA--CTTCCTCGACAGG-ATT-CATGGTCTTGGCA  922

seq1  TCTCTAATATCTTGGTCTC  968
      ||||| | |||||| ||||
seq2  TCTCTCA-ATCTTGCTCTC  940

seq1: chr14_57182364_57183556
seq2: B6Ng01-008D03.g_68_1261 (reverse)

seq1  TTCAGTCAGGCAAAATGGTTT-CCAGTTTTATCACTGTAGCCCTGAACAG  49
      |||||||  | |||||||||| || |||| |||||  ||  |||||||| 
seq2  TTCAGTCGAGAAAAATGGTTTCCCTGTTTAATCAC--TAAGCCTGAACAC  48

seq1  TTTCCATGCACCAGCCAGAACTGGATACCAGTAACTACACTTAGCTTCTA  99
       || ||||| |||| ||| |||| |||||||||| |||  |||| || ||
seq2  GTTTCATGCCCCAG-CAGGACTGAATACCAGTAAATACCATTAG-TTTTA  96

seq1  TTCTACTTTCACCCCAAATCAATGACTGCTAGCGGGGCCTGTGATTCAGT  149
      ||||| |||||||||||||| ||||||||||| ||| | ||| || ||||
seq2  TTCTATTTTCACCCCAAATC-ATGACTGCTAGAGGGCCTTGTAATCCAGT  145

seq1  GAG-CACATGCATAGTGCGTG-TGAGGCCCTGGGTTCAGCCCTCAGTGCC  197
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGCCACATGCATAGTGCGTGTTGAGGCCCTGGGTTCAGCCCTCAGTGCC  195

seq1  ATGTACATACGA-GAATGTCTTGAAGTACAGCACGTACACTCCAGAACGC  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTACATACGAGGAATGTCTTGAAGTACAGCACGTACACTCCAGAACGC  245

seq1  TAGAGCACCTCCAGTCCACGCATGACTACATCATCGTTTCACACTTATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCACCTCCAGTCCACGCATGACTACATCATCGTTTCACACTTATCT  295

seq1  ACCTGGCCCTG-AAGAAGCTGGAGTTTCCCACCTGTGACAGGAATGTAG-  344
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  ACCTGGCCCTGAAAGAAGCTGGAGTTTCCCACCTGTGACAGGAATGTAGA  345

seq1  AACTGTTCTGCCAAGCACTTAAGAAGCAGCACATGAAACTCTGTCTCATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCTGCCAAGCACTTAAGAAGCAGCACATGAAACTCTGTCTCATT  395

seq1  CTAACTGATGGCCACGTGTGAGGAGCGCCTACCTGGAAACGCGTGCTGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGATGGCCACGTGTGAGGAGCGCCTACCTGGAAACGCGTGCTGTG  445

seq1  CAGACACCATGGTGAGCAGCTTCTCTTGCTCCTCCATGAGCCTCTGCAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCATGGTGAGCAGCTTCTCTTGCTCCTCCATGAGCCTCTGCAGC  495

seq1  TGTTCCAGCTGCTGCCTCTTCAGCTGCTCCTGCTTCTTCTGCTGGATCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGCTGCTGCCTCTTCAGCTGCTCCTGCTTCTTCTGCTGGATCTC  545

seq1  TTTCAGCTTTTAAACGGAAAATCAGAGTCGTGTTAGGCTTCCTGACGTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTTTAAACGGAAAATCAGAGTCGTGTTAGGCTTCCTGACGTCC  595

seq1  CATAATCATTGATCATTGCTTCATCCTCCCTCCCAGATTGTCCCTGACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCATTGATCATTGCTTCATCCTCCCTCCCAGATTGTCCCTGACAA  645

seq1  ATAATTTCAGAGAAAGACTCCCCAAAATGTATCTCTTCGCCACAAGAACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCAGAGAAAGACTCCCCAAAATGTATCTCTTCGCCACAAGAACA  695

seq1  AATTTGCCTTCTAAATGTTTCTACCAGCTTGCCAGTTAAACACCCATTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCTTCTAAATGTTTCTACCAGCTTGCCAGTTAAACACCCATTTG  745

seq1  GGGTGTTTCTCCATTGTGGTAAACATTTGCCACAGGAACACTAAAATCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTCTCCATTGTGGTAAACATTTGCCACAGGAACACTAAAATCTA  795

seq1  ATTTCTTCTAAAGAATATCATATCAGTATTTCAAATAAGAAAGTGGGGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTAAAGAATATCATATCAGTATTTCAAATAAGAAAGTGGGGGA  845

seq1  CAACCCCTTGGAGTTTTTTAAGAGGATAGGTGTACCAGGACATTGACTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTTGGAGTTTTTTAAGAGGATAGGTGTACCAGGACATTGACTAT  895

seq1  TTTCTGATATTTGATCACCCATTTCTAACTTCATTCTTACCAAACAATGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATATTTGATCACCCATTTCTAACTTCATTCTTACCAAACAATGT  945

seq1  GGCAATTGAAAAACATGAATTTATCTTAACTGCTTCATTTTGTGATTATA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGAAAAACATGAATTTATCTTAACTGCTTCATTTTGTGATTATA  995

seq1  TATGTACATGTATACCAAACACATCTTAACACTTCACATTAGACAAACAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATGTATACCAAACACATCTTAACACTTCACATTAGACAAACAA  1045

seq1  TTTGGACTTTGGAGGATTCTGAGTAAGGAGGAAACAAGATGACTGGTCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTTTGGAGGATTCTGAGTAAGGAGGAAACAAGATGACTGGTCAT  1095

seq1  ACAATGCCTGTAACAATACAAATCAGTTTCTATAAGGCCAGACCCTACCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCTGTAACAATACAAATCAGTTTCTATAAGGCCAGACCCTACCT  1145

seq1  GTTCCAGTTTTTTAAAAAGTGGGTTTTTATTAGCCACTTCTTTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGTTTTTTAAAAAGTGGGTTTTTATTAGCCACTTCTTTGAATTC  1194