BAC Information

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BAC

Clone NameB6Ng01-008F06
Chromosome14 (Build37)
Map Location 43,929,563 - 44,074,638
singlet/doubletdoublet
Overlap geneLOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380
Upstream geneEG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471
Downstream geneLOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F06.bB6Ng01-008F06.g
ACCDH844617DH844618
length923657
definitionDH844617|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F06, 5' end.DH844618|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,073,703 - 44,074,638)(43,929,563 - 43,930,219)
sequence
gaattcattgtgcatgacagcttttcagctggccttgatatgtataatta
ttctattatatcttaatttcctatttctttcttcttctgctcaggtgtag
tctgtgaacctcgatgtttcttgatgtaatgattcttaaactacgaaaaa
ttgagatataagggctcagtacagcacagtttaaaatgttacaagtgtat
gctgtgtgttctcatcttggaaacaatgtaatgataattgtgtaatggta
gttccagattaatgcataactttcaaagaaagtttgaagaaattattaga
aaattaaagagagataacatcgggaaccgagaaatgtaaaagttattgat
gttctaaaattagtttcacacaacaattgagagtagtcctgaatagtaaa
gtctagaatatgtcataccgtatgccagtcaaactaagtcaaaacgctgg
gactcttacaagggttattgtgtgcaatgtacagaatcagaaagtaagca
gaagtactgagttaagggttaagcacccctgacccattcagtgcttttgt
agaagctttcccagcagagccctaccctgcaaagcaggggttgcatttcc
agaacacaccagctactcaaatggataccatgtttccttttgcaaagaaa
tggaagagtccattcagacaccatctgggaagactctatctcattttcag
agccacttcaattacagatttcacttagcaccagctgtattcctatgcca
gtattctctgcattgccacttcctggggtagtggtcagtgatgagctctg
cactatgatttgtcctgttacctggggttgctgctccgagacctgctctc
tgatccaaagagaaattcaatctcattcttaactggcttgggctggaagg
aaatggggcctcacttttttttt
gaattccagcaccagatcatggtcagttgagccaggagcactggctatgg
ggtccaggaaggtgctgggcaagggcggctggtggcccaactaaagttaa
gagttgagtttctccagataaaaccggggaccctgctagacagagcagaa
aaaagcttcccagcagccaagcttttctgaagagctttttgctctgcctg
ccccaaggtgtccaggggtattgggggtcttttagggacaaaaccagaca
accccagaaatgtccctccagtccttacttaacttttcctgtccgtgggg
ggatttttgagagacagagtgagatagttatccagcttgcagattattag
aaggaaactttaagggtggagcataatgtaaataaagtttaagaaaatgc
aggaatgtgcaagaatgtgtttgccaatcacacccagagtggtgcttttt
catatagttgtaaaatggcttctgagagtcttagaagttctgaagtttac
actctgatgcctagtgttaaacatttttgaaaaatgtctctcaaggctgg
ggtactgggaacactgaaccaggaagatccagagttcaagaccctcctga
gctacaaaagaaccctgtctgagaaaagaaagtgaggaggagtgggtggt
agggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44073703_44074638
seq2: B6Ng01-008F06.b_42_964 (reverse)

seq1  AAAAAAAAAGTAGAAGCACCCATTTCCTTTCAGAGCCAAAGCAGTTAAGA  50
      ||||||||||| || || ||||||||||| |||  ||||  |||||||||
seq2  AAAAAAAAAGT-GAGGC-CCCATTTCCTTCCAG-CCCAAGCCAGTTAAGA  47

seq1  ATGTGATTTGAAGTTTCTCTTTGGATCAGAGAAGCAGGTTTTGGGAGCAG  100
      ||| || ||||| |||||||||||||||||| |||||| | | |||||||
seq2  ATGAGA-TTGAA-TTTCTCTTTGGATCAGAG-AGCAGG-TCTCGGAGCAG  93

seq1  CAACACCAGGTAACAGGGACAAATCATAGTGCAGAGCTCATCACTGA-CA  149
      |||| |||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CAACCCCAGGTAACA-GGACAAATCATAGTGCAGAGCTCATCACTGACCA  142

seq1  CTACCACAGGAAAGTGGGCAATGCAGAGAATACTGGCATAAGACAATGGA  199
      ||||| |||| |||| |||||||||||||||||||||||| |  |||  |
seq2  CTACCCCAGG-AAGT-GGCAATGCAGAGAATACTGGCATAGG--AATACA  188

seq1  GCTGGTGCTAAGTTAAAATCCTGTAATTGAAGTGGCTCTGAAAATGAGAT  249
      ||||||||||||| |||   ||||||||||||||||||||||||||||||
seq2  GCTGGTGCTAAGTGAAA--TCTGTAATTGAAGTGGCTCTGAAAATGAGAT  236

seq1  AGAGTCTTCCCAGATGGTGTCTGAATGGACTCTTCCATTTCTTTGCAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCCCAGATGGTGTCTGAATGGACTCTTCCATTTCTTTGCAAAA  286

seq1  GGAAACATGGTATCCATTTGAGTAGCTGGTGTGTTCTGGAAATGCAACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGGTATCCATTTGAGTAGCTGGTGTGTTCTGGAAATGCAACCC  336

seq1  CTGCTTTGCAGGGTAGGGCTCTGCTGGGAAAGCTTCTACAAAAGCACTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGCAGGGTAGGGCTCTGCTGGGAAAGCTTCTACAAAAGCACTGA  386

seq1  ATGGGTCAGGGGTGCTTAACCCTTAACTCAGTACTTCTGCTAGCTTTCTG  449
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ATGGGTCAGGGGTGCTTAACCCTTAACTCAGTACTTCTGCTTACTTTCTG  436

seq1  ATTCTGTACATTGCACACAATAACCCTTGTAAGAGTCCCAGCGTTTTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTACATTGCACACAATAACCCTTGTAAGAGTCCCAGCGTTTTGAC  486

seq1  TTAGTTTGACTGGCATACGGTATGACATATTCTAGACTTTACTATTCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGACTGGCATACGGTATGACATATTCTAGACTTTACTATTCAGG  536

seq1  ACTACTCTCAATTGTTGTGTGAAACTAATTTTAGAACATCAATAACTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTCAATTGTTGTGTGAAACTAATTTTAGAACATCAATAACTTTT  586

seq1  ACATTTCTCGGTTCCCGATGTTATCTCTCTTTAATTTTCTAATAATTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTCGGTTCCCGATGTTATCTCTCTTTAATTTTCTAATAATTTCT  636

seq1  TCAAACTTTCTTTGAAAGTTATGCATTAATCTGGAACTACCATTACACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTTCTTTGAAAGTTATGCATTAATCTGGAACTACCATTACACAA  686

seq1  TTATCATTACATTGTTTCCAAGATGAGAACACACAGCATACACTTGTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTACATTGTTTCCAAGATGAGAACACACAGCATACACTTGTAAC  736

seq1  ATTTTAAACTGTGCTGTACTGAGCCCTTATATCTCAATTTTTCGTAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACTGTGCTGTACTGAGCCCTTATATCTCAATTTTTCGTAGTTT  786

seq1  AAGAATCATTACATCAAGAAACATCGAGGTTCACAGACTACACCTGAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATTACATCAAGAAACATCGAGGTTCACAGACTACACCTGAGCA  836

seq1  GAAGAAGAAAGAAATAGGAAATTAAGATATAATAGAATAATTATACATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAGAAATAGGAAATTAAGATATAATAGAATAATTATACATAT  886

seq1  CAAGGCCAGCTGAAAAGCTGTCATGCACAATGAATTC  936
      |||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCTGAAAAGCTGTCATGCACAATGAATTC  923

seq1: chr14_43929563_43930219
seq2: B6Ng01-008F06.g_68_724

seq1  GAATTCCAGCACCAGATCATGGTCAGTTGAGCCAGGAGCACTGGCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACCAGATCATGGTCAGTTGAGCCAGGAGCACTGGCTATGG  50

seq1  GGTCCAGGAAGGTGCTGGGCAAGGGCGGCTGGTGGCCCAACTAAAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGAAGGTGCTGGGCAAGGGCGGCTGGTGGCCCAACTAAAGTTAA  100

seq1  GAGTTGAGTTTCTCCAGATAAAACCGGGGACCCTGCTAGACAGAGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGTTTCTCCAGATAAAACCGGGGACCCTGCTAGACAGAGCAGAA  150

seq1  AAAAGCTTCCCAGCAGCCAAGCTTTTCTGAAGAGCTTTTTGCTCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTCCCAGCAGCCAAGCTTTTCTGAAGAGCTTTTTGCTCTGCCTG  200

seq1  CCCCAAGGTGTCCAGGGGTATTGGGGGTCTTTTAGGGACAAAACCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGTGTCCAGGGGTATTGGGGGTCTTTTAGGGACAAAACCAGACA  250

seq1  ACCCCAGAAATGTCCCTCCAGTCCTTACTTAACTTTTCCTGTCCGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAAATGTCCCTCCAGTCCTTACTTAACTTTTCCTGTCCGTGGGG  300

seq1  GGATTTTTGAGAGACAGAGTGAGATAGTTATCCAGCTTGCAGATTATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGAGAGACAGAGTGAGATAGTTATCCAGCTTGCAGATTATTAG  350

seq1  AAGGAAACTTTAAGGGTGGAGCATAATGTAAATAAAGTTTAAGAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTTTAAGGGTGGAGCATAATGTAAATAAAGTTTAAGAAAATGC  400

seq1  AGGAATGTGCAAGAATGTGTTTGCCAATCACACCCAGAGTGGTGCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGCAAGAATGTGTTTGCCAATCACACCCAGAGTGGTGCTTTTT  450

seq1  CATATAGTTGTAAAATGGCTTCTGAGAGTCTTAGAAGTTCTGAAGTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTTGTAAAATGGCTTCTGAGAGTCTTAGAAGTTCTGAAGTTTAC  500

seq1  ACTCTGATGCCTAGTGTTAAACATTTTTGAAAAATGTCTCTCAAGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATGCCTAGTGTTAAACATTTTTGAAAAATGTCTCTCAAGGCTGG  550

seq1  GGTACTGGGAACACTGAACCAGGAAGATCCAGAGTTCAAGACCCTCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGGAACACTGAACCAGGAAGATCCAGAGTTCAAGACCCTCCTGA  600

seq1  GCTACAAAAGAACCCTGTCTGAGAAAAGAAAGTGAGGAGGAGTGGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAAAGAACCCTGTCTGAGAAAAGAAAGTGAGGAGGAGTGGGTGGT  650

seq1  AGGGTGG  657
      |||||||
seq2  AGGGTGG  657