BAC Information

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BAC

Clone NameB6Ng01-009B16
Chromosome14 (Build37)
Map Location 14,250,194 - 14,251,305
singlet/doubletsinglet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B16.g
ACCDH845138
length1,112
definitionDH845138|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccgatgatacttcctggattgacacaagcgcgggctgcaacctca
tgctggagctctggaaggaggacaagggaggacaaaggtattaagaacgg
aaaccaaggagccttaatgatgagtcaaatacggaataggagtgagtcca
aatattccgacttgcacaacttactcaccaacgaaggaccctcacattgc
ccgaaagctttctgataaaaatgtcttcctacaggccaagggggcatctg
aaggagtaaagagaggtcttttttagagagttgattctgagggttggaaa
ctctatactttggagtctaagaagtcttatactgccataatcatactggt
aggactgtgtttgttttaaagagacactcatgccctccctttggccatca
taaatagaaacagtgaccttcaggaaattggaatttctctaggttgagat
gtttgatgccacggatagttatagcttgtctccaggaaaaaaacatttcc
tacacttctgataacttacttgttctttttgtaggaaagactgcacctag
gcaatggtgatgggaagatctacaccttaactactattgttagcagtgta
tacttcttttattaataagataattcatcaattaatttattattgagaca
ggtgttcgctgtataatcatggctgtcctggaactcacaggagagaccag
ggtgtcccctcgaactcagatatctacctgtctctgcctcccaagtgctg
ggattaaaggcatgcactaccatcgcctagcgcgatgtatacttctagct
ctatatttcaatctaaattttatgtcaggactccaaggacatattttggg
ctactatttttcagttactgacttggacaatctttctctatttttcacta
ttttttctttttgttagtggtctattgaggatggtggctgagtctttctg
ttagggtgcgaaagctgggcttaatcatggcaactctagtacagtggata
tcttctattcgatcctaaaagcagtggagaatagactctggtaagtctac
tccgataaaatagtcaacattcgaacatttatgaggcagttagcaatgca
tacagtcaccca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_14250194_14251305
seq2: B6Ng01-009B16.g_97_1180

seq1  ACAAGCGTGGGCTGCAACATCAGGCTGGAGCACTGGAAGGAGGAGAACAG  50
      ||||||| |||||||||| ||| |||||||| |||||||||||| ||  |
seq2  ACAAGCGCGGGCTGCAACCTCATGCTGGAGCTCTGGAAGGAGGACAAGGG  50

seq1  AGGAGAAAGGTATTAAGAAGGAAAACCAAGGAGCCTTAATGATGAGTCAA  100
      |||| |||||||||||||| | ||||||||||||||||||||||||||||
seq2  AGGACAAAGGTATTAAGAACGGAAACCAAGGAGCCTTAATGATGAGTCAA  100

seq1  ATATGGAATTGGAGTGAGTCTAAATATTCAGACTTGGACAACTTACTCAC  150
      ||| ||||| |||||||||| |||||||| |||||| |||||||||||||
seq2  ATACGGAATAGGAGTGAGTCCAAATATTCCGACTTGCACAACTTACTCAC  150

seq1  CAGCGAAGGAGCATCAGATTGTCCAGAAACAGTCTGAGAAAAATGTCTTC  200
      || ||||||| | ||| |||| ||  || |  ||||| ||||||||||||
seq2  CAACGAAGGACCCTCACATTGCCCGAAAGCTTTCTGATAAAAATGTCTTC  200

seq1  AGACAGGCAAATGGAGCATCTGAAATATTAAAGAGACACCAATAAGTAGA  250
        |||||| || || |||||||||  | ||||||||   |  |   ||||
seq2  CTACAGGCCAAGGGGGCATCTGAAGGAGTAAAGAGAGGTC-TTTTTTAGA  249

seq1  GAGTTGATTCTGAGGGTTGGAAACTCTATACTTTGGAGTCTAAGAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATTCTGAGGGTTGGAAACTCTATACTTTGGAGTCTAAGAAGTCT  299

seq1  TATACTGCCATAATCATACTGGCAGGACTGTAAATGTCTTAAAGAGACAC  350
      |||||||||||||||||||||| ||||||||   ||| ||||||||||||
seq2  TATACTGCCATAATCATACTGGTAGGACTGTGTTTGTTTTAAAGAGACAC  349

seq1  TCATGCCCTCCCTTTGGCCATCAGAGATAGAAACAGTGACCTTCAGGAAA  400
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  TCATGCCCTCCCTTTGGCCATCATAAATAGAAACAGTGACCTTCAGGAAA  399

seq1  TTGGAATTTCTCTAGGTTGAGATGTTTGATGTCAGGTAGAGTTATAGCTT  450
      ||||||||||||||||||||||||||||||| || | | |||||||||||
seq2  TTGGAATTTCTCTAGGTTGAGATGTTTGATGCCACGGATAGTTATAGCTT  449

seq1  GTCTCCTGGAAAAAAACATTTCCTACACTTCTGATAACTTACTTGTTCTT  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGAAAAAAACATTTCCTACACTTCTGATAACTTACTTGTTCTT  499

seq1  TTTGTAGGAGAGACTGCACCTAGGCAATGGTGATGGGAAGATCTACACCT  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGAAAGACTGCACCTAGGCAATGGTGATGGGAAGATCTACACCT  549

seq1  TAGCTAGTATTGTTAGCAGTGTATACTTCTTTTATTAATTAATTAATTAA  600
      || ||| |||||||||||||||||||||||||||||||| |  ||||| |
seq2  TAACTACTATTGTTAGCAGTGTATACTTCTTTTATTAATAAGATAATTCA  599

seq1  TTAATTAATTTATTATTGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTC  650
      | |||||||||||||||||||||||  ||| ||||||| || ||||||||
seq2  TCAATTAATTTATTATTGAGACAGGTGTTCGCTGTATAATCATGGCTGTC  649

seq1  CTGGAACTCACTTTGTAGACCAGGCTGTCCCCTCGAACTCAGATATCTAC  700
      |||||||||||     |||||||| |||||||||||||||||||||||||
seq2  CTGGAACTCACAGGAGAGACCAGGGTGTCCCCTCGAACTCAGATATCTAC  699

seq1  CTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACTACCATCGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACTACCATCGCC  749

seq1  TAGCGCGATGTATACTTCTAGCTCTATATTTCAATCTAAATTTTATGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCGATGTATACTTCTAGCTCTATATTTCAATCTAAATTTTATGTCA  799

seq1  GGACTCCAAGGACATATTTTGGGCTACTATTTTTCAGTTACTGACTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAAGGACATATTTTGGGCTACTATTTTTCAGTTACTGACTTGGA  849

seq1  CAATCTTTCCTCTTATTTTTCACTATTTTTTTCTTTTTTGTTTAGTTGGT  900
      |||||||| ||| |||||||||||| ||||||||||||   |||| ||||
seq2  CAATCTTT-CTC-TATTTTTCACTA-TTTTTTCTTTTT--GTTAG-TGGT  893

seq1  CTATTGAGGATTGGTGGCTGAGTCTTTCTTGTTAGGGTTGCCAAAGCCTG  950
      |||||||||| ||||||||||||||||| |||||||| ||| |||| |||
seq2  CTATTGAGGA-TGGTGGCTGAGTCTTTC-TGTTAGGG-TGCGAAAG-CTG  939

seq1  GGCTTTATCCATGGCAACTCTAGTAACAGTGGGAATATCTTCATATTTGA  1000
      ||||| || ||||||||||||||| |||||||  |||||||| |||| ||
seq2  GGCTTAAT-CATGGCAACTCTAGT-ACAGTGG--ATATCTTC-TATTCGA  984

seq1  TCTTAAAAAGCAGTGGAAGATAGACTCTGGTTAGTCTAGCCAGATAAAAA  1050
      || | ||||||||||||  |||||||||||| ||||||  | ||||||| 
seq2  TCCT-AAAAGCAGTGGAGAATAGACTCTGGTAAGTCTACTCCGATAAAA-  1032

seq1  TTAAGTTCAACATATCCAGACATTTATTGATGCAGTTTTAGCAAATGCAT  1100
       ||   ||||||| || | ||||||| ||| ||||  ||||| |||||||
seq2  -TA--GTCAACAT-TCGA-ACATTTA-TGAGGCAG--TTAGC-AATGCAT  1073

seq1  ATCAGTCACCCA  1112
      | ||||||||||
seq2  A-CAGTCACCCA  1084