BAC Information

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BAC

Clone NameB6Ng01-009K09
Chromosome14 (Build37)
Map Location 5,929,431 - 5,996,857
singlet/doubletdoublet
Overlap geneENSMUSG00000057445, LOC100041598, LOC100041243, EG666684
Upstream geneLOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226
Downstream geneLOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K09.bB6Ng01-009K09.g
ACCDH845533DH845534
length1,086780
definitionDH845533|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K09, 5' end.DH845534|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,929,431 - 5,930,521)(5,996,080 - 5,996,857)
sequence
gaattcctaaaagagcagaaaagctatcttccagctggtttgctaagcta
tgttcctcttcctaaccaccattgtcagacatatgccacactccctgtta
caggcccggttgccttgaaatgtataagctgcctcagacataaagatatg
gggaacattgtcaggtcatatcagatgggacgcagggaaatcctgaagtt
catagtgcttagcactatcaagcactaattaatcgtgtgtcttcaaatcc
aaagtgtctgagtcctcaccacatgacatgaccaggggagcatccttctt
tgttcttttcatcagagactcaagttacctacagtaatctggaagatgaa
gtgcttcaactcccttccatgaaaggacacattgttattctcatagtgcc
cactcctgccattttttgccactcaaaatgaaattaaatagctcccagaa
aagtagctgcaggtttgtcaattcctggctctgtcaaactaatcatcaga
aattcttgactctttttctgacattgacaaagtccaaggcttcagcttgt
aagacctactcctggaaggcccagctcaagcctacctctaccaggaagtt
ccccaactctgcccaggactcactgtgccttctccagaatgatttccttc
ttcctttttcatgagaaaggattccctcttccttctctgttggtctgggt
ctctccttcatcgccattctcttttctgaaatagcctgagcagccaggaa
aacattcctgctggtgaacccagagcaaacagaagggatgaaccacaggc
agttgctgtcaccacaacacaggtgacaacacagaggattctagttctat
cctaatacaagagattctccaaggaaggcattactgatgatgtcactagc
aactgccatgacctacctggtaactagttctggccagcttggtcttttct
ggggtgcctctcctggagcttctcatggactcgtgggatcccctttggca
acctcttccttccaagctggggattctactgctctttagatgtcattgtg
ctttttagggggacgttgaaggatctgacatcctta
gaattctttagaattggaaggagaggttgcaaaaggggatcccacgggtc
cctgagaggctccaggagaggcaccccagaaaaggaccaagctgggcaga
actagttaacaggtaggtcatggcagttgctagtgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggatagaactagaatcttctgtg
ttgtcacctgtgttgtggtgacagcaactgcctgtggttcatcccttctg
tttgctctgggttcaccagccggaatgttttcctggctgctcaggctatt
tcagaaagagaatggcgatgaaggagagaccagaccaacagagaaggaag
agggaatcctttctcatgaaaaagaaagaaggatatggttatggagaagg
cacagtgagtcctgggcagagttggggaacttcctggtagaggaaggctt
gagctgggccttccaggattaggtcttacaagctgaagccttggactttg
tcaatgtcagaaaaggattcaagaatttctgatgattagtatgacagacc
caggaattgacaaacctgcagctacttttctgggagctatttaatttcat
tttgagtggcaaaaaatgtcaggagtgggcactataagaataacagtgtg
tcctttcatggaagggagttgaagcacttcatcttccagattactgtagg
taactttgagtctctgatgaaaagaacagaaaaaggtgctccccctggtc
atgtcatgtggtgaggactcagactctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5929431_5930521
seq2: B6Ng01-009K09.b_47_1132

seq1  GAATTCCTAAAAGAGCAGAAAAGCTATCTTCCAGCTGGTTTGCTAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAAGAGCAGAAAAGCTATCTTCCAGCTGGTTTGCTAAGCTA  50

seq1  TGTTCCTCTTCCTAACCACCATTGTCAGACATATGCCACACTCCCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTTCCTAACCACCATTGTCAGACATATGCCACACTCCCTGTTA  100

seq1  CAGGCCCGGTTGCCTTGAAATGTATAAGCTGCCTCAGACATAAAGATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCGGTTGCCTTGAAATGTATAAGCTGCCTCAGACATAAAGATATG  150

seq1  GGGAACATTGTCAGGTCATATCAGATGGGACGCAGGGAAATCCTGAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATTGTCAGGTCATATCAGATGGGACGCAGGGAAATCCTGAAGTT  200

seq1  CATAGTGCTTAGCACTATCAAGCACTAATTAATCGTGTGTCTTCAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCTTAGCACTATCAAGCACTAATTAATCGTGTGTCTTCAAATCC  250

seq1  AATGTGTCTGAGTCCTCACCACATGACATGACCAGGGGAGCATCCTTCTC  300
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGTGTCTGAGTCCTCACCACATGACATGACCAGGGGAGCATCCTTCTT  300

seq1  TGTTCTTTTCATCAGAGACTCAAGTTACCTACAGTAATCTGGAAGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTCATCAGAGACTCAAGTTACCTACAGTAATCTGGAAGATGAA  350

seq1  GTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTCATAGTGCC  400
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGCTTCAACTCCCTTCCATGAAAGGACACATTGTTATTCTCATAGTGCC  400

seq1  CACTCCTGACATTTTTTGCCACTCAAAATGAAATTAAATAGCTCCCAGAA  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGCCATTTTTTGCCACTCAAAATGAAATTAAATAGCTCCCAGAA  450

seq1  AAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTCAAACTAATCATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTCAAACTAATCATCAGA  500

seq1  AATTCTTGACTCTTTTTCTGACATTGACAAAGTCCAAGGCTTCAGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGACTCTTTTTCTGACATTGACAAAGTCCAAGGCTTCAGCTTGT  550

seq1  AAGACCTACTCCTGGAAGGCCCAGCTCAAGCCTACCTCTACCAGGAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTACTCCTGGAAGGCCCAGCTCAAGCCTACCTCTACCAGGAAGTT  600

seq1  CCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCAGAATGATTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCAGAATGATTTCCTTC  650

seq1  TTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCT-GGT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGGT  700

seq1  CTCTCCTTCATCGCCATTCTC-TTTCTGAAATAGCCTGAGCAGCCAGGAA  748
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTCCTTCATCGCCATTCTCTTTTCTGAAATAGCCTGAGCAGCCAGGAA  750

seq1  AACATTCCTGCTGGTGAACCCAGAGCAAACAGAAGGGATGAACCACAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCTGCTGGTGAACCCAGAGCAAACAGAAGGGATGAACCACAGGC  800

seq1  AGTTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTAT  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTGCTGTCACCACAACACAGGTGACAACACAGAGGATTCTAGTTCTAT  850

seq1  CCTAGATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTAG  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTA-ATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTAG  899

seq1  CAACTGCCATGACCTACCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTTT  948
      |||||||||||||||||||| |||||||||||| |||||||||| |||||
seq2  CAACTGCCATGACCTACCTGGTAACTAGTTCTGGCCAGCTTGGT-CTTTT  948

seq1  CTGGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTGGGATCCCCTTTTG  998
      ||||||||||||||||||||| |||||||||| ||||||||||||||| |
seq2  CTGGGGTGCCTCTCCTGGAGCTTCTCATGGACTCGTGGGATCCCCTTTGG  998

seq1  CAACCTC-TCCTTCCAATTCTGGAGAATTCTACTGCTTCATTAGATGTCA  1047
      ||||||| |||||||||  |||| | |||||||||| || ||||||||||
seq2  CAACCTCTTCCTTCCAA-GCTGG-GGATTCTACTGC-TCTTTAGATGTCA  1045

seq1  -TGTGCTTTTGAGGGGGAACGTTGGTTAGGACTCTGACATGCTTA  1091
       ||||||||| |||||| ||||||   |||| |||||||| ||||
seq2  TTGTGCTTTTTAGGGGG-ACGTTG--AAGGA-TCTGACATCCTTA  1086

seq1: chr14_5996080_5996857
seq2: B6Ng01-009K09.g_68_847 (reverse)

seq1  CAAAGTGTCTGAGTCCTCACCACATGACATGACCA-GGGGAGCATCCTTC  49
      ||||| ||||||||||||||||||||||||||||| |||||||| | || 
seq2  CAAAGAGTCTGAGTCCTCACCACATGACATGACCAGGGGGAGCACCTTTT  50

seq1  TCTGTTCTTTTCATCAGAGACTC-AAGTTACCTACAGTAATCTGGAAGAT  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGTTCTTTTCATCAGAGACTCAAAGTTACCTACAGTAATCTGGAAGAT  100

seq1  GAAGTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTTATAGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTTATAGT  150

seq1  GCCCACTCCTGACATTTTTTGCCACTCAAAATGAAATTAAATAGCTCCCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTCCTGACATTTTTTGCCACTCAAAATGAAATTAAATAGCTCCCA  200

seq1  GAAAAGTAGCTGCAGGTTTGTCAATTCCTGGGTCTGTCATACTAATCATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGCTGCAGGTTTGTCAATTCCTGGGTCTGTCATACTAATCATC  250

seq1  AGAAATTCTTGAATCCTTTTCTGACATTGACAAAGTCCAAGGCTTCAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTTGAATCCTTTTCTGACATTGACAAAGTCCAAGGCTTCAGCT  300

seq1  TGTAAGACCTAATCCTGGAAGGCCCAGCTCAAGCCTTCCTCTACCAGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACCTAATCCTGGAAGGCCCAGCTCAAGCCTTCCTCTACCAGGAA  350

seq1  GTTCCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCATAACCATATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCATAACCATATCC  400

seq1  TTCTTTCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTG  450

seq1  GTCTCTCCTTCATCGCCATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTTCATCGCCATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGA  500

seq1  AAACATTCCGGCTGGTGAACCCAGAGCAAACAGAAGGGATGAACCACAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCCGGCTGGTGAACCCAGAGCAAACAGAAGGGATGAACCACAGG  550

seq1  CAGTTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTA  600

seq1  TCCTAGATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTA  650

seq1  GCAACTGCCATGACCTACCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCCATGACCTACCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTT  700

seq1  TCTGGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTGGGATCCCCTTTT  748
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTGGGGTGCCTCTCCTGGAGCCTCTCAGGGACCCGTGGGATCCCCTTTT  750

seq1  GCAACCTCTCCTTCCAATTCTGGAGAATTC  778
      |||||||||||||||||||||  |||||||
seq2  GCAACCTCTCCTTCCAATTCTAAAGAATTC  780