BAC Information

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BAC

Clone NameB6Ng01-009L11
Chromosome14 (Build37)X (Build37)
Map Location 20,712,616 - 20,713,040132,600,678 - 132,601,683
singlet/doubletsingletsinglet
Overlap geneGng2
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534
Downstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L11.bB6Ng01-009L11.g
ACCDH845585DH845586
length8501,002
definitionDH845585|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L11, 5' end.DH845586|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,712,616 - 20,713,040)(132,600,678 - 132,601,683)
sequence
gaattcactacataaaccatgctggccttgaatgcacagagatcctcctg
cctttgcctcccaagtgctgagatgaaaggcatgtaccatcatgcctaac
tgagagggagttcttttagctggtaggttaaaaataaagtctgtcatgga
aacagaagcgatggtcagctggatgcattgcatttgcaacgaccagacaa
agagagacaaatgctatcagttagctttctccttatagagtgcgggatca
aaccccatagaattgaactatccacaggtaaggtgggtctttccacctta
atcaaaccaaatctagataagctcttgaaggcatgcctaaaagcttgttg
cctgggtgattctagaacatgtcaaactgaaaatgttggctatcacagat
aactaagcatatagtgaatcagtaaataagtacaaactactgatgaagac
agccattaagatgaagctagacacaaaagagtacgggcagtataattcca
cttacatagcattcttcatctgaaagctcagcctgtagttccaggagtta
gaatactggcctcctggaatgaagggcatttggagtattgactacaaaga
cgtgtgacattctggggtaatactaaacttgaatgcaatagatgtgattt
tatgagggtgtatgtttgtttttattacttctttacttgtagaaaatgtt
gtttacatacaagaaaaaaattttggggggtttttcaagacagggtttct
ctgtgtagctctggctgtcctggaactcactctgtagaccaggctggcct
cgaactcagaaatccacctgcctctgccttcctgagtgctgggattaaag

gaattcattgaacagaaacaatgtaaaggtgatcgttaccaggggaggga
cgggaaaacacactgttctttgtttggatatgagagtctgtgcaccatga
cacagaagcaaagcctcaggtgagggattgaacgggatctgggatctcta
gctcccttgtatcaggagggctgtgtgtatactgcacacaggtgaaagga
ataagatgaaaagtgtattattacaccatggggaagtgtgcttaaccaaa
accaaacaggggccccgagttattaaaatgttccctatgttatctgcctg
agttccagagaatgaggcccagcagtaatcacgtgacaatttcattccat
cacttttccctttgtgtatggcatatatagcatatatacacgtgtgtata
tgtagcctttaaagaactactaagatagccttttaaatctgctttattag
gttcacaatatatactgagcatcttcccatgcaatagataaattctgcta
acaaaaaaagaaatgtaagactgagtcgaaaacacaagtttcaattagaa
tctggcagaagttggagccccatggggaaacaagtgacaccagaaatatt
acaacagtacatcacaaacatgtaagttttgaaagcaggggtccccatgt
catcttcagagaaaagctcaggactcagggcataaggcaaaactcatcat
ggtggtcatgatgaggcgggtcagtgctaaccgcccgcaggctgtggctc
agcttccctttctctcagcttctccatgagctgtctcacatcatttccaa
atctctgtacgttctcctctttcatccttccctggggttccccaatccta
tgaatcagggtccatctgtagtgcacgatgggttgtcgaaaccggactgc
ctgtgaacctcctcaggcacgtatagtctccagcttcgaaaggcagggcc
acatcggatccttttggtagcatcctgtggcttttcttctttatctcctt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_20712616_20713040
seq2: B6Ng01-009L11.b_487_897

seq1  CTGATGAAGACAGCCATGATCTCCAAGTCCCTGGACACTCTTCTATGAAG  50
      ||||||||||||||||| |     |||   || |||||         |||
seq2  CTGATGAAGACAGCCATTAAGATGAAG---CTAGACAC-------AAAAG  40

seq1  CTAACG---------TTTCTGCGAAC-TAGAATTCATTCA--TTACATTT  88
         |||          |||  |  || ||| |||| ||||  | | |  |
seq2  AGTACGGGCAGTATAATTCCACTTACATAGCATTC-TTCATCTGAAAGCT  89

seq1  GAG--TGCAGAT--AATCGTAGGATTACTGAACCTTCACTGGGCCTGAAA  134
       ||  || || |  |   ||  || |||||  |||   |  ||  |||| 
seq2  CAGCCTGTAGTTCCAGGAGTTAGAATACTG-GCCT---CCTGGAATGAAG  135

seq1  GAGATTTGGAAGTCTGGCCAGCTACTC-TGCTGCATTGAATCGAAACTAA  183
      |  |||||||    || | |   |  | ||   ||||     |       
seq2  GGCATTTGGAGTATTGACTACAAAGACGTGTGACATTCTGGGG-------  178

seq1  ATCATACAGTAACCTGAAGTGCAGACCATA-ATTTGCCCCCCCCCCCCAG  232
       | ||||  ||| ||  | ||||    ||| || ||              
seq2  -TAATAC--TAAACTTGAATGCA----ATAGATGTG--------------  207

seq1  TACCCTTTCCTAGTAATGGTATCT-TTTCTTTCCATTTCTTTTTTGTTTT  281
           |||  || | | ||| | | ||| |||  ||| ||| |||   ||
seq2  ----ATTT--TA-TGAGGGTGTATGTTTGTTTTTATTACTTCTTT-ACTT  249

seq1  GT-----TTGTTTGTTTGTTTGC----------TTTT---TGGTTTTTTG  313
      ||      || ||||||   | |          ||||    |||||||  
seq2  GTAGAAAATG-TTGTTTACATACAAGAAAAAAATTTTGGGGGGTTTTTCA  298

seq1  AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  363
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAG  348

seq1  ACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCC-TCCCAAGT  412
      |||||||||||||| |||||||||||||||||||||||||| |||  |||
seq2  ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTTCCTGAGT  398

seq1  GCTGGGATTAAAG  425
      |||||||||||||
seq2  GCTGGGATTAAAG  411

seq1: chrX_132600678_132601683
seq2: B6Ng01-009L11.g_68_1069

seq1  GAATTCATTGAACAGAAACAATGTAAAGGTGATCGTTACCAGGGGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAACAGAAACAATGTAAAGGTGATCGTTACCAGGGGAGGGA  50

seq1  CGGGAAAACACACTGTTCTTTGTTTGGATATGAGAGTCTGTGCACCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAACACACTGTTCTTTGTTTGGATATGAGAGTCTGTGCACCATGA  100

seq1  CACAGAAGCAAAGCCTCAGGTGAGGGATTGAACGGGATCTGGGATCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCAAAGCCTCAGGTGAGGGATTGAACGGGATCTGGGATCTCTA  150

seq1  GCTCCCTTGTATCAGGAGGGCTGTGTGTATACTGCACACAGGTGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTGTATCAGGAGGGCTGTGTGTATACTGCACACAGGTGAAAGGA  200

seq1  ATAAGATGAAAAGTGTATTATTACACCATGGGGAAGTGTGCTTAACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGAAAAGTGTATTATTACACCATGGGGAAGTGTGCTTAACCAAA  250

seq1  ACCAAACAGGGGCCCCGAGTTATTAAAATGTTCCCTATGTTATCTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGGGGCCCCGAGTTATTAAAATGTTCCCTATGTTATCTGCCTG  300

seq1  AGTTCCAGAGAATGAGGCCCAGCAGTAATCACGTGACAATTTCATTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGAGAATGAGGCCCAGCAGTAATCACGTGACAATTTCATTCCAT  350

seq1  CACTTTTCCCTTTGTGTATGGCATATATAGCATATATACACGTGTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCCCTTTGTGTATGGCATATATAGCATATATACACGTGTGTATA  400

seq1  TGTAGCCTTTAAAGAACTACTAAGATAGCCTTTTAAATCTGCTTTATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTTAAAGAACTACTAAGATAGCCTTTTAAATCTGCTTTATTAG  450

seq1  GTTCACAATATATACTGAGCATCTTCCCATGCAATAGATAAATTCTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAATATATACTGAGCATCTTCCCATGCAATAGATAAATTCTGCTA  500

seq1  ACAAAAAAAGAAATGTAAGACTGAGTCGAAAACACAAGTTTCAATTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAGAAATGTAAGACTGAGTCGAAAACACAAGTTTCAATTAGAA  550

seq1  GCTGGCAGAAGTTGGAGCCCCATGGGGAAACAAGTGACACCAGAAATATT  600
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGAAGTTGGAGCCCCATGGGGAAACAAGTGACACCAGAAATATT  600

seq1  ACAACAGTACATCACAAACATGTAAGTTTTGAAAGCAGGGGTCCCCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTACATCACAAACATGTAAGTTTTGAAAGCAGGGGTCCCCATGT  650

seq1  CATCTTCAGAGAAAAGCTCAGGACTCAGGGCATAAGGCAAAACTCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGAGAAAAGCTCAGGACTCAGGGCATAAGGCAAAACTCATCAT  700

seq1  GGTGGTCATGATGAGGCGGGTCAGTGCTAACCGCCCGCAGGCTGTGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCATGATGAGGCGGGTCAGTGCTAACCGCCCGCAGGCTGTGGCTC  750

seq1  AGC-TGCCTTTCCCTCAGCTTCTCCATGAGCTGTCTCACATCATCCCCAA  799
      ||| | |||||| |||||||||||||||||||||||||||||||  ||||
seq2  AGCTTCCCTTTCTCTCAGCTTCTCCATGAGCTGTCTCACATCATTTCCAA  800

seq1  ACCTCTGTACGTTCTCCTCTCTCATCCTTCCCTGGGGCTCCCCAACCCTA  849
      | |||||||||||||||||| |||||||||||||||| ||||||| ||||
seq2  ATCTCTGTACGTTCTCCTCTTTCATCCTTCCCTGGGGTTCCCCAATCCTA  850

seq1  TGCATCAGGTCCCATCTGTAGTGCACGATGGGCTGCCGAACCCGGAACCG  899
      || ||||||  ||||||||||||||||||||| || |||| |||| || |
seq2  TGAATCAGGGTCCATCTGTAGTGCACGATGGGTTGTCGAAACCGG-ACTG  899

seq1  CCTGCG-ACCTCCTCTAGGCACGTAGTAGTCTCCAGCTTCGAAAGGCAGG  948
      |||| | |||||||| ||||||||| ||||||||||||||||||||||||
seq2  CCTGTGAACCTCCTC-AGGCACGTA-TAGTCTCCAGCTTCGAAAGGCAGG  947

seq1  GCCACAATCGGATCCCTTTTGCTAGCATCCTGTGGCTTTTCTTCCTTTTC  998
      ||||| ||||||| ||||||| ||||||||||||||||||||| ||||  
seq2  GCCAC-ATCGGAT-CCTTTTGGTAGCATCCTGTGGCTTTTCTT-CTTTAT  994

seq1  CTCCTTTT  1006
      ||||||||
seq2  CTCCTTTT  1002