BAC Information

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BAC

Clone NameB6Ng01-009N12
Chromosome14 (Build37)
Map Location 105,814,358 - 105,959,058
singlet/doubletdoublet
Overlap genenone
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
Downstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N12.bB6Ng01-009N12.g
ACCDH845677DH845678
length1,1941,122
definitionDH845677|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N12, 5' end.DH845678|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,957,830 - 105,959,058)(105,814,358 - 105,815,175)
sequence
gaattctgtctatcagggctcagagtaaaggggactggggaaaatagaac
agtttacatcttttaatagaactgcctggagctgtgggaatggctacgat
ggtaacgacagtgaccgtgaaaggagacgaatatcgttcaccatgctcca
gatactgttctggttgtatgaatgtgttcatctaacacttacagaattct
gagacttccacttaacgcttggtcatgggcacagcttgtttgcagagaag
ttttcctctctgttaccaattttttctctcttgaattctgctgttgagta
gtcaggcacaccaaaaatgtggagttgacatatactgcttaagggttccc
ttggcctcatagacagctatagaagactgctgtggcatctttctttgcta
gaagactcaacacagttcctctctagcaaccagcaccattagcagatttc
caaaatggcatggttacatgatagctgctatattggttgccagtacttca
ttccagatacatgaataccaaaggtgggagggagccctcatttcaagaaa
aagaacattctgaatacttgtttctgtttacagtaaaaggatcatgtcag
cttttatcttggaatgcaggtactaaaatgtttgtccagatgttaccaaa
ataaacgttctttgcttgtcacaaataatcttattttattaagtaatcaa
tccagaacctcacccagttatcccagttggttgagtagtccttacattca
ccatccacgttgccagcctggatgagactgttccatttctgcaattgaag
ttttcaatcagctgtgactcttttttcatgagtcagcgccactgctgagt
caggatgcctccatgagagacctggcattgatgggcaaacaagcttgctt
cgtcaatgcctatttgctgaaggctgctgctgtcattcatgagctgagcc
actactatgtgtgagtacgtaccttaagagaaaatactaccatggaattt
tcactttataacatgtgctcaatatacatgtggatgatgctaaagggcag
aagacgtaaaaatggtcacttgcaatgatgtgatcataagaatcacgaac
caacaaatctcttgcagaatagaaaattcctctggaattaatcatgttct
ctggtcttatgagcattatttatgctagtagaccttggatcaga
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttttttttattacgtattttcctc
aattacatttccaatgctatcccaaaagtctcccacccccaccccactcc
cctacccacccattcccattttttggccctggcgttcccctgtactgggg
catataaagtttgcctgtccagtgggcctctctttccagtgatggccgac
taggccatcttttgatacatatgcagctagagtcaagagctccggggtac
tggttagttcataatgttgcacctacagggttgcagatctctttagcttc
ttgtatactttctctagctcctccattgggggccctgtgatccatccagt
agttgactttgagcatccacttctgtgtttgctaggccctggcctagtct
cacaagagacagctatatcacggtccttgcaacaaacacttgctagtgta
tgcaatggtgtcatcgtttggaggctaattatgggatggatccctggata
tggcagtctcttgatggtccatccttttgtctcagctccaaactttgtct
ctgtaactccttccatgggtgattgtttccaattctaagaaggggtgagt
tctttatatatattggatattagtcccctatctgatttaggataggtaaa
gatcttttcccaatctgttggtggcctttttgtcttattgatgatgtctt
ttgccttacagaagctttgcaattttatgagggatggacctctttaatat
ctgtagtaagatattactattcctattgttcatgctattgaatattcata
attacatgcattgattacatggtgtttgtattaccatgtataaaaatgaa
tacaacagaatgggtagtgtcagggatcaagatgcgtctccatcgcacag
ttgaccagctgttgggatcacagacttcatggcttcaattttccttgctt
aatatgacctcaaagggccaaaggcagccacgctgccacttaatgcaata
agtcactgttacagttctttgcttgtttacaggtctataattacacgcgc
taacctcactcaaaggttgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_105957830_105959058
seq2: B6Ng01-009N12.b_47_1240 (reverse)

seq1  TCTGATCCCAGTGCTCTAACTAGCATTAATAATATGCTTTCAATAGA-CA  49
      |||||||| ||  ||   |||||||| ||||  ||||  |||  ||| ||
seq2  TCTGATCCAAGGTCT---ACTAGCATAAATA--ATGC--TCATAAGACCA  43

seq1  GAGGAACATGGTTATATTTCAGAGGCATTTTTCTCTATTCTGCAGTAGTT  99
      || ||||||| ||| ||| |||||| ||||   |||||||||||  || |
seq2  GA-GAACATGATTA-ATTCCAGAGGAATTT---TCTATTCTGCAAGAGAT  88

seq1  TTTGTTTTGTTTCGTTGGATCTCTATGTATCACATCATTTTGCAAGTGGC  149
      |   | ||| |||||  |||   |||| |||||||||  ||||||||| |
seq2  T---TGTTGGTTCGT--GATTCTTATG-ATCACATCA--TTGCAAGTGAC  130

seq1  CATTTTTTACCCTTCTTCTTTCCCTTTTAGCATCATTCCACATGTATATT  199
      |||||||    | |||||  | || |||||||||| |||||||||||| |
seq2  CATTTTT---ACGTCTTC--TGCCCTTTAGCATCA-TCCACATGTATA-T  173

seq1  TGAGCACATGTTTAATAAAGTGGAAAATTCCATGGTAGTTATTTTTCTCT  249
      ||||||||||||  ||||||| |||||||||||||||||   ||||||||
seq2  TGAGCACATGTT--ATAAAGT-GAAAATTCCATGGTAGT--ATTTTCTCT  218

seq1  TAAGGTACGGTACCTCACACATAGTAGTGGCTCAGCTCATGAATGACAGC  299
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAC-GTA-CTCACACATAGTAGTGGCTCAGCTCATGAATGACAGC  266

seq1  AGCAGCCTTTCAGCAAATAGGCATTGACGAAGCAAAGCTTGTTTGCCCAT  349
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCAGCC-TTCAGCAAATAGGCATTGACGAAGC-AAGCTTGTTTGCCCAT  314

seq1  CAATGCCAGGTCTCTCATGGGGGCATCCTGACTCAGCAGTGGCGCTGACT  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAATGCCAGGTCTCTCATGGAGGCATCCTGACTCAGCAGTGGCGCTGACT  364

seq1  CATGAAAAAAGAGTCACAGCTGATTGAAAACTTCAATTGCAGAAATGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAAGAGTCACAGCTGATTGAAAACTTCAATTGCAGAAATGGAA  414

seq1  CAGTCTCATCCAGGCTGGCAACGTGGATGGTGAATGTAAGGACTACTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCATCCAGGCTGGCAACGTGGATGGTGAATGTAAGGACTACTCAA  464

seq1  CCAACTGGGATAACTGGGTGAGGTTCTGGATTGATTACTTAATAAAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGGATAACTGGGTGAGGTTCTGGATTGATTACTTAATAAAATAA  514

seq1  GATTATTTGTGACAAGCAAAGAACGTTTATTTTGGTAACATCTGGACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTGTGACAAGCAAAGAACGTTTATTTTGGTAACATCTGGACAAA  564

seq1  CATTTTAGTACCTGCATTCCAAGATAAAAGCTGACATGATCCTTTTACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTACCTGCATTCCAAGATAAAAGCTGACATGATCCTTTTACTG  614

seq1  TAAACAGAAACAAGTATTCAGAATGTTCTTTTTCTTGAAATGAGGGCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAACAAGTATTCAGAATGTTCTTTTTCTTGAAATGAGGGCTCC  664

seq1  CTCCCACCTTTGGTATTCATGTATCTGGAATGAAGTACTGGCAACCAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTTTGGTATTCATGTATCTGGAATGAAGTACTGGCAACCAATA  714

seq1  TAGCAGCTATCATGTAACCATGCCATTTTGGAAATCTGCTAATGGTGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCTATCATGTAACCATGCCATTTTGGAAATCTGCTAATGGTGCTG  764

seq1  GTTGCTAGAGAGGAACTGTGTTGAGTCTTCTAGCAAAGAAAGATGCCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGAGAGGAACTGTGTTGAGTCTTCTAGCAAAGAAAGATGCCACA  814

seq1  GCAGTCTTCTATAGCTGTCTATGAGGCCAAGGGAACCCTTAAGCAGTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTCTATAGCTGTCTATGAGGCCAAGGGAACCCTTAAGCAGTATA  864

seq1  TGTCAACTCCACATTTTTGGTGTGCCTGACTACTCAACAGCAGAATTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTCCACATTTTTGGTGTGCCTGACTACTCAACAGCAGAATTCAA  914

seq1  GAGAGAAAAAATTGGTAACAGAGAGGAAAACTTCTCTGCAAACAAGCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAAATTGGTAACAGAGAGGAAAACTTCTCTGCAAACAAGCTGT  964

seq1  GCCCATGACCAAGCGTTAAGTGGAAGTCTCAGAATTCTGTAAGTGTTAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGACCAAGCGTTAAGTGGAAGTCTCAGAATTCTGTAAGTGTTAGA  1014

seq1  TGAACACATTCATACAACCAGAACAGTATCTGGAGCATGGTGAACGATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATTCATACAACCAGAACAGTATCTGGAGCATGGTGAACGATAT  1064

seq1  TCGTCTCCTTTCACGGTCACTGTCGTTACCATCGTAGCCATTCCCACAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTCCTTTCACGGTCACTGTCGTTACCATCGTAGCCATTCCCACAGC  1114

seq1  TCCAGGCAGTTCTATTAAAAGATGTAAACTGTTCTATTTTCCCCAGTCCC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGTTCTATTAAAAGATGTAAACTGTTCTATTTTCCCCAGTCCC  1164

seq1  CTTTACTCTGAGCCCTGATAGACAGAATTC  1229
      ||||||||||||||||||||||||||||||
seq2  CTTTACTCTGAGCCCTGATAGACAGAATTC  1194

seq1: chr14_105814358_105815175
seq2: B6Ng01-009N12.g_366_1190

seq1  TACTGGTTAGTTCATAATGTTGCACCTACAGGGTTGCAGATCTCTTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTAGTTCATAATGTTGCACCTACAGGGTTGCAGATCTCTTTAGC  50

seq1  TTCTTGTATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCC  100

seq1  AGTAGTTGACTTTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGACTTTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCCTAG  150

seq1  TCTCACAAGAGACAGCTATATCACGGTCCTTGCAACAAACACTTGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGAGACAGCTATATCACGGTCCTTGCAACAAACACTTGCTAGT  200

seq1  GTATGCAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCCCTGG  250

seq1  ATATGGCAGTCTCTTGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCAGTCTCTTGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTG  300

seq1  TCTCTGTAACTCCTTCCATGGGTGATTGTTTCCAATTCTAAGAAGGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAACTCCTTCCATGGGTGATTGTTTCCAATTCTAAGAAGGGGTG  350

seq1  AGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGT  400

seq1  AAAGATCTTTTCCCAATCTGTTGGTGGCC-TTTTGTCTTATTGATGATGT  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAGATCTTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGATGT  450

seq1  CTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGGATGGACCTC-TTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGGATGGACCTCTTTAA  500

seq1  TATCTGTAGTAAGATATTACTATTCCTATTGTTCATGCTATTG-ATATTC  547
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATCTGTAGTAAGATATTACTATTCCTATTGTTCATGCTATTGAATATTC  550

seq1  ATAA-TACATGCATTGATTACAT-GTGTTTGTATTACCATGTAATAAAAA  595
      |||| |||||||||||||||||| |||||||||||||||||| |||||||
seq2  ATAATTACATGCATTGATTACATGGTGTTTGTATTACCATGT-ATAAAAA  599

seq1  TGAATACAACAGAATGGGTAGTGTCA-GGATCAAGATGCGTCCCCATCGC  644
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TGAATACAACAGAATGGGTAGTGTCAGGGATCAAGATGCGTCTCCATCGC  649

seq1  AGCAGTTGACCAGCTGTTGGGATCACAGACTTCATGGCTCCAATTTTCCT  694
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  A-CAGTTGACCAGCTGTTGGGATCACAGACTTCATGGCTTCAATTTTCCT  698

seq1  TGCTTAATATTGACCCCAAAGGG-CAAAGGCAGCAACGCTGCAGCTTATT  743
      ||||||||| ||||| ||||||| |||||||||| |||||||  |||| |
seq2  TGCTTAATA-TGACCTCAAAGGGCCAAAGGCAGCCACGCTGCCACTTAAT  747

seq1  GCAATATGTCACTGTTACAGTTCCTTGC-TGTTTACGAGTCTA-ATTTAC  791
      |||||| |||||||||||||||| |||| |||||||  ||||| | ||||
seq2  GCAATAAGTCACTGTTACAGTTCTTTGCTTGTTTACAGGTCTATAATTAC  797

seq1  ACGC-TAAACCTCAC-CAAAGGTTTGTCT  818
      ||||   |||||||| |||||| ||||||
seq2  ACGCGCTAACCTCACTCAAAGG-TTGTCT  825