BAC Information

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BAC

Clone NameB6Ng01-010O23
Chromosome14 (Build37)
Map Location 88,894,346 - 89,031,602
singlet/doubletdoublet
Overlap genenone
Upstream geneTdrd3, LOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010O23.bB6Ng01-010O23.g
ACCDH846460DH846461
length1,088989
definitionDH846460|Mus musculus domesticus DNA, BAC clone: B6Ng01-010O23, 5' end.DH846461|Mus musculus domesticus DNA, BAC clone: B6Ng01-010O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,030,502 - 89,031,602)(88,894,346 - 88,895,339)
sequence
gaattctcttttttatttctttttgatgaatttattcattttatatccct
attacaacgctatcactcctctcccccagtacctccctcacacattccat
ccgattctcctcagagaaggggagggctcccatgtctaccaagccaccct
ggaacatcaagtcacagtaggacaagtgcattctctccttctgaggcaaa
acaagacagcccagatagcagagagggatacaatagcagggaaacaaaac
agcccagatagcagaaagggataccatggcaggtaaacaaaacagcccag
atagcagaaagggatactatggcaggtaaaggaggcagagacaacttccg
ttttaattgttaggcaacccacatgaagaccaagccttgctactatttct
taaagatgtattttttagatttaataatttttatttagacaatgacataa
aacttaaaggacacattcccgattcatgtagaataaaataattatatggc
ttagccattaaagactatatacacaaccaaaacagaattcttgaaacagg
tgacactaaagattgcagtctgataaagggatattgtgagaaggtaaaac
tgtaaggtatttccagaagagatcagggagagaaaaggcagacatacata
ttcatatgatttttattatggtgttctaagtgttctaatttgttattggt
tattattaatctctttctatatctgattataagttacatgtatgtagaaa
acactattatttgtagagggtgacactggttttatttcagctatttttgg
agagtctttgagtattcaccctattgtgtgtttcactaaacatactccta
cgtgttctacatcaagatggacataaatttacctgagtaggttaactctt
aaaactctctgacatagggaatgaagtagaaaatacaactcaaactatat
tcatacattaagtattcaccagtcaaaaaataattttcttctcaatagat
attatgatggaatatattagttttatcatgtgccttagacttgacctcaa
aaggtcaagatacgacctaggaatagttttcattcatt
gaattccttgaactcatgagatcagtctgatcatttgttagctattctca
tttcaagcttcctgaaagctagatctggatgccttgcagtgaaaagaatg
ttacattatatttcagagccataataacctgctttattcctttttgccac
agagtagctatttgactaagggacaatgactgtgggtgtaaagtgaataa
gtaaatgaaataatagaaacaaaataaaaaatgtattttcatattaagtt
gaataggtagttattgcaaaaacattctgtcctttacctcagtgagctca
gctgtttgtttccaagctaaagatgcttaaggagatcagatcttttccat
tcctccatccttctggcttcctgaattctccatttgctgatatctttccc
taaaagagctttacttgtaagctatttctattctttgttcctattttttt
tttcattctggtacttggtaacaaaattaaaccttgattcaaacacaagt
aacacagttacatgccattttcaaacagaaagtagtaaagataaatactg
gaaacaatatcagatgcagtatatttggtaaacatgcaatactaaatata
actaagtaagagagcatctattttatgttttggtttgtgcacacctaaga
tcccttttagaagaaagtggaaaaattattgtatgaattaatatatatta
atataattatatgataaataaatatataaatgtgtataattatataatat
attagtataatgtaatatagctggaataatatgtatatatactatttcag
ctataaaggacgctgagacaggatgattataattattagttctttctagg
ttatggaacaacttttcatttgagttttggctacttgcctaaagaagagc
taaggtaacttttgtgtaaagcacttgggtggatatgtagattcaaacaa
cattgcaaaaaaaggaatgtgctgttatcaggcgacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89030502_89031602
seq2: B6Ng01-010O23.b_45_1132 (reverse)

seq1  AATGAATGAAAACTTATCTCTA-GTCGTATCTTTGACTGTTTTGA-GTCA  48
      ||||||||||||| |||  ||| |||||||| |||||  |||||| ||| 
seq2  AATGAATGAAAAC-TATTCCTAGGTCGTATC-TTGAC-CTTTTGAGGTC-  46

seq1  AAAGTCTTTAAAAGGCACATGATAAAACTAATATATTCCATCAATAATAT  98
       ||||||    ||||||||||||||||||||||||||||||| |||||||
seq2  -AAGTCT----AAGGCACATGATAAAACTAATATATTCCATC-ATAATAT  90

seq1  CTATTTGAGAAGAAAATTATTTTTTGAACTGGGTGATACTTAATGTATGG  148
      ||| |||||||||||||||||||||| |||||   |||||||||||||| 
seq2  CTA-TTGAGAAGAAAATTATTTTTTG-ACTGGTGAATACTTAATGTATGA  138

seq1  ATTATTAGTTTGAGTTGTATTTTCTACTTTCATTCCCTATGTCAGAGAGT  198
      ||   |||||||||||||||||||||| ||||||||||||||||||||||
seq2  AT--ATAGTTTGAGTTGTATTTTCTAC-TTCATTCCCTATGTCAGAGAGT  185

seq1  TTTAAGAGTTAACCTACTCAGGTAAATTTATGTCCATCTTGATGTAGAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGTTAACCTACTCAGGTAAATTTATGTCCATCTTGATGTAGAAC  235

seq1  ACGTAGGAGTATGTTTAGTGAAACACACAATAGGGTGAATACTCAAAGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGAGTATGTTTAGTGAAACACACAATAGGGTGAATACTCAAAGAC  285

seq1  TCTCCAAAAATAGCTGAAATAAAACCAGTGTCACCCTCTACAAATAATAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAAATAGCTGAAATAAAACCAGTGTCACCCTCTACAAATAATAG  335

seq1  TGTTTTCTACATACATGTAACTTATAATCAGATATAGAAAGAGATTAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTACATACATGTAACTTATAATCAGATATAGAAAGAGATTAATA  385

seq1  ATAACCAATAACAAATTAGAACACTTAGAACACCATAATAAAAATCATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAATAACAAATTAGAACACTTAGAACACCATAATAAAAATCATAT  435

seq1  GAATATGTATGTCTGCCTTTTCTCTCCCTGATCTCTTCTGGAAATACCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTATGTCTGCCTTTTCTCTCCCTGATCTCTTCTGGAAATACCTT  485

seq1  ACAGTTTTACCTTCTCACAATATCCCTTTATCAGACTGCAATCTTTAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTACCTTCTCACAATATCCCTTTATCAGACTGCAATCTTTAGTG  535

seq1  TCACCTGTTTCAAGAATTCTGTTTTGGTTGTGTATATAGTCTTTAATGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTTTCAAGAATTCTGTTTTGGTTGTGTATATAGTCTTTAATGGC  585

seq1  TAAGCCATATAATTATTTTATTCTACATGAATCGGGAATGTGTCCTTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATATAATTATTTTATTCTACATGAATCGGGAATGTGTCCTTTAA  635

seq1  GTTTTATGTCATTGTCTAAATAAAAATTATTAAATCTAAAAAATACATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTCATTGTCTAAATAAAAATTATTAAATCTAAAAAATACATCT  685

seq1  TTAAGAAATAGTAGCAAGGCTTGGTCTTCATGTGGGTTGCCTAACAATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATAGTAGCAAGGCTTGGTCTTCATGTGGGTTGCCTAACAATTA  735

seq1  AAACGGAAGTTGTCTCTGCCTCCTTTACCTGCCATAGTATCCCTTTCTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGAAGTTGTCTCTGCCTCCTTTACCTGCCATAGTATCCCTTTCTGC  785

seq1  TATCTGGGCTGTTTTGTTTACCTGCCATGGTATCCCTTTCTGCTATCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGCTGTTTTGTTTACCTGCCATGGTATCCCTTTCTGCTATCTGG  835

seq1  GCTGTTTTGTTTCCCTGCTATTGTATCCCTCTCTGCTATCTGGGCTGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTGTTTCCCTGCTATTGTATCCCTCTCTGCTATCTGGGCTGTCT  885

seq1  TGTTTTGCCTCAGAAGGAGAGAATGCACTTGTCCTACTGTGACTTGATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTCAGAAGGAGAGAATGCACTTGTCCTACTGTGACTTGATGT  935

seq1  TCCAGGGTGGCTTGGTAGACATGGGAGCCCTCCCCTTCTCTGAGGAGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTGGCTTGGTAGACATGGGAGCCCTCCCCTTCTCTGAGGAGAAT  985

seq1  CGGATGGAATGTGTGAGGGAGGTACTGGGGGAGAGGAGTGATAGCGTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGAATGTGTGAGGGAGGTACTGGGGGAGAGGAGTGATAGCGTTGT  1035

seq1  AATAGGGATATAAAATGAATAAATTCATCAAAAAGAAATAAAAAAGAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGATATAAAATGAATAAATTCATCAAAAAGAAATAAAAAAGAGAA  1085

seq1  TTC  1101
      |||
seq2  TTC  1088

seq1: chr14_88894346_88895339
seq2: B6Ng01-010O23.g_64_1052

seq1  GAATTCCTTGAACTCATGAGATCAGTCTGATCATTTGTTAGCTATTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAACTCATGAGATCAGTCTGATCATTTGTTAGCTATTCTCA  50

seq1  TTTCAAGCTTCCTGAAAGCTAGATCTGGATGCCTTGCAGTGAAAAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCTTCCTGAAAGCTAGATCTGGATGCCTTGCAGTGAAAAGAATG  100

seq1  TTACATTATATTTCAGAGCCATAATAACCTGCTTTATTCCTTTTTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATATTTCAGAGCCATAATAACCTGCTTTATTCCTTTTTGCCAC  150

seq1  AGAGTAGCTATTTGACTAAGGGACAATGACTGTGGGTGTAAAGTGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCTATTTGACTAAGGGACAATGACTGTGGGTGTAAAGTGAATAA  200

seq1  GTAAATGAAATAATAGAAACAAAATAAAAAATGTATTTTCATATTAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAAATAATAGAAACAAAATAAAAAATGTATTTTCATATTAAGTT  250

seq1  GAATAGGTAGTTATTGCAAAAACATTCTGTCCTTTACCTCAGTGAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGTAGTTATTGCAAAAACATTCTGTCCTTTACCTCAGTGAGCTCA  300

seq1  GCTGTTTGTTTCCAAGCTAAAGATGCTTAAGGAGATCAGATCTTTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGTTTCCAAGCTAAAGATGCTTAAGGAGATCAGATCTTTTCCAT  350

seq1  TCCTCCATCCTTCTGGCTTCCTGAATTCTCCATTTGCTGATATCTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATCCTTCTGGCTTCCTGAATTCTCCATTTGCTGATATCTTTCCC  400

seq1  TAAAAGAGCTTTACTTGTAAGCTATTTCTATTCTTTGTTCCTATTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGCTTTACTTGTAAGCTATTTCTATTCTTTGTTCCTATTTTTTT  450

seq1  TTTCATTCTGGTACTTGGTAACAAAATTAAACCTTGATTCAAACACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTGGTACTTGGTAACAAAATTAAACCTTGATTCAAACACAAGT  500

seq1  AACACAGTTACATGCCATTTTCAAACAGAAAGTAGTAAAGATAAATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTTACATGCCATTTTCAAACAGAAAGTAGTAAAGATAAATACTG  550

seq1  GAAACAATATCAGATGCAGTATATTTGGTAAACATGCAATACTAAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATATCAGATGCAGTATATTTGGTAAACATGCAATACTAAATATA  600

seq1  ACTAAGTAAGAGAGCATCTATTTTATGTTTTGGTTTGTGCACACCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTAAGAGAGCATCTATTTTATGTTTTGGTTTGTGCACACCTAAGA  650

seq1  TCCCTTTTAGAAGAAAGTGGAAAAATTATTGTATGAATTAATATATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTAGAAGAAAGTGGAAAAATTATTGTATGAATTAATATATATTA  700

seq1  ATATAATTATATGATAAATAAATATATAAATGTGTATAATTATATAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATATGATAAATAAATATATAAATGTGTATAATTATATAATAT  750

seq1  ATTAGTATAATGTAATATAGCTGGAATAATATGTATATATACTATTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATAATGTAATATAGCTGGAATAATATGTATATATACTATTTCAG  800

seq1  CTATAAAGGACGCTGAGACAGGATGATTATAATTATTAGTTCTTTCTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGGACGCTGAGACAGGATGATTATAATTATTAGTTCTTTCTAGG  850

seq1  TTATGGAACAAC-TTTCAATTGAGTTTTGGCTACTTGCCTAAAGAAAGAG  899
      |||||||||||| ||||| ||||||||||||||||||||||||| |||||
seq2  TTATGGAACAACTTTTCATTTGAGTTTTGGCTACTTGCCTAAAG-AAGAG  899

seq1  CTAGGGTAACTTTGTGGTAAAGCACTTGGGTGGAATATGTAAGATCAAAC  949
      ||| |||||||||   ||||||||||||||||| |||||||   ||||||
seq2  CTAAGGTAACTTTTGTGTAAAGCACTTGGGTGG-ATATGTAGATTCAAAC  948

seq1  AAACATTGAAAAAAAAAGGAAATGTG-TGTATATCAGGCAGACAAA  994
       ||||||| |||||||  | |||||| ||| |||||||| ||||||
seq2  -AACATTGCAAAAAAA--GGAATGTGCTGT-TATCAGGC-GACAAA  989