BAC Information

Click to search

BAC

Clone NameB6Ng01-011A13
Chromosome14 (Build37)
Map Location 11,385,243 - 11,531,166
singlet/doubletdoublet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A13.bB6Ng01-011A13.g
ACCDH846530DH846531
length1,1481,059
definitionDH846530|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A13, 5' end.DH846531|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,385,243 - 11,386,410)(11,530,104 - 11,531,166)
sequence
gaattcaaaagaatatttattaaactgctcagccaagtcaaagaggatgc
aaataaactcctgaacaaagtaagaaaaggatgtaaaaaaatcaatatag
ccatacacgggaaaaatcaatcaaattgaaatcacagagaagagactctc
aacagttcaattccaaatctgagtgaagagccttacctacagaatggatc
aagtagaaggcagaaaaggcagagatgaatcagaatgttcacattacata
taattagcaagaacaaacagtacatggaacgtctaaggaacatgaatctt
tgattcctggatacagttcttcatacatagataaagctctcctctctctc
tctctctctctctctttctttctctctctctctctgtgtgtgaaataatg
tctttatgaaacctcacgctttgtaaaataatatgtacctactttagaac
tgcatgtggctgtatgtagctcacaaaactagaaatacttgcccttttcc
actttatgaaaggttcgccagccctaccctggatatttaaatttaaattt
aaatttaaattgaggcttcttttccacagctatataggttagcattggga
agcctagatttttaatcctagctcatccatttacacttaggcaagtggtc
cgactcttcttaatttttgtctcagtatttgtccaaaggacatatggact
caggcagcaaccagttttaaatggtaccagaagctttcaggcttgtgggt
gggaagggtcagataacaacataaacatgaagagtcgagatattttaaaa
tcgcaataaccatcaaaaaggtgtatggaaaccatagtagttacaggaca
tggaagttaggttgagggagttgtgtacaggaaaatggcttatgaaaggg
agtcaaatggtcaagctgaagtgccttagagagactaaaattgttttggt
ggctttgacaagtgtaccagccaactttcataggatttgctatgagttac
ccttgctttaatgttctagtgagtgggggaaacgaggtcatctcagctta
aaaccttgagcgatcttgcttttagaaattgatcaatccttcattgattt
ttaaagaattaataagatccattctgttcagaactgtatagctctacc
gaattcatgaggactaggggtcagattctttgcacctatgtaaatgccag
tgtgtagccacccacctataattcctatgcttagaaggcagtcatatggg
acccctagactaggctggctagataggctagtcatagacaagctccaggt
tcagtcaagaccctgactcagtgaatgaagtgtagacctagatgtctgtc
agcatccatgcatgagtgcctgcagtggacccccgcaagtcgctgtgttc
cttgcttttatgctatgggccagctctttttagggtccactaatgcacag
tggcaggtggtaaggtaggcacttgagaaatcccacccttctcttcatca
ccatcagcacagtttctaggaagacactacagggatgaggcctgcaggtt
atgaagaggggctgtcacgtggctgcagccgatcacctgcagcttttctg
tttgggaagaactataaattgattagcaaggctaaatgtcaaggtacatt
ttattggagtcatctatgcgtatttggaagttgttgtgatatatttgaat
ctaatgtgtattaatatgtgggcaaaggttaattttgactatttctgtgt
tgagacgctccacttgtctttccttcccagctttgtgagatgtgtgtttc
tcactttggtggcctgtctttgactttggcgcatcactaattatgcacgc
aattttagaacgacactgacatgaatacgaaatattaataaaccaacaag
acaagcagttttcaaaaatcacattatgtgtacttactgcttaactgacc
ttttctgcagttacttacatcttttaaaatccatttaattttcaaagcca
gaatattagcctatttatatgtaaattgtctttaattcacacattgattt
agaagactaatccaaagatctttcactgcagtgacctttttgcccttatt
cttgtggaaaactgtgaagcagtttctcagtgacccaccatctacctgtg
tacaacatgcatcagcttgaagtctccataaatcaatccacatcgacact
tctcaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11385243_11386410
seq2: B6Ng01-011A13.b_46_1193

seq1  GAATTCAAAAGAATATTTATTAAACTGCTCAGCCAAGTCAAAGAGGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAATATTTATTAAACTGCTCAGCCAAGTCAAAGAGGATGC  50

seq1  AAATAAACTCCTGAACAAAGTAAGAAAAGGATGTAAAAAAATCAATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTCCTGAACAAAGTAAGAAAAGGATGTAAAAAAATCAATATAG  100

seq1  CCATACACGGGAAAAATCAATCAAATTGAAATCACAGAGAAGAGACTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACGGGAAAAATCAATCAAATTGAAATCACAGAGAAGAGACTCTC  150

seq1  AACAGTTCAATTCCAAATCTGAGTGAAGAGCCTTACCTACAGAATGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCAATTCCAAATCTGAGTGAAGAGCCTTACCTACAGAATGGATC  200

seq1  AAGTAGAAGGCAGAAAAGGCAGAGATGAATCAGAATGTTCACATTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGGCAGAAAAGGCAGAGATGAATCAGAATGTTCACATTACATA  250

seq1  TAATTAGCAAGAACAAACAGTACATGGAACGTCTAAGGAACATGAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCAAGAACAAACAGTACATGGAACGTCTAAGGAACATGAATCTT  300

seq1  TGATTCCTGGATACAGTTCTTCATACATAGATAAAGCTCTCCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTGGATACAGTTCTTCATACATAGATAAAGCTCTCCTCTCTCTC  350

seq1  TCTCTCTCTCTCTCTTTCTTTCTCTCTCTCTCTCTGTGTGTGAAATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTTTCTTTCTCTCTCTCTCTCTGTGTGTGAAATAATG  400

seq1  TCTTTATGAAACCTCACGCTTTGTAAAATAATATGTACCTACTTTAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGAAACCTCACGCTTTGTAAAATAATATGTACCTACTTTAGAAC  450

seq1  TGCATGTGGCTGTATGTAGCTCACAAAACTAGAAATACTTGCCCTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGCTGTATGTAGCTCACAAAACTAGAAATACTTGCCCTTTTCC  500

seq1  ACTTTATGAAAGGTTCGCCAGCCCTACCCTGGATATTTAAATTTAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGAAAGGTTCGCCAGCCCTACCCTGGATATTTAAATTTAAATTT  550

seq1  AAATTTAAATTGAGGCTTCTTTTCCACAGCTATATAGGTTAGCATTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATTGAGGCTTCTTTTCCACAGCTATATAGGTTAGCATTGGGA  600

seq1  AGCCTAGATTTTTAATCCTAGCTCATCCATTTACACTTAGGCAAGTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGATTTTTAATCCTAGCTCATCCATTTACACTTAGGCAAGTGGTC  650

seq1  CGACTCTTCTTAATTTTTGTCTCAGTATTTGTCCAAAGGACATATGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTTCTTAATTTTTGTCTCAGTATTTGTCCAAAGGACATATGGACT  700

seq1  CAGGCAGCAACCAGTTTTAAATGGTACCAGAAGCTTTCAGGCTTGTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCAACCAGTTTTAAATGGTACCAGAAGCTTTCAGGCTTGTGGGT  750

seq1  GGGAAGGGTCAGATAACAACATAAACATGAAGAGTCGAGATATTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGTCAGATAACAACATAAACATGAAGAGTCGAGATATTTTAAAA  800

seq1  TCGCAATAACCATCAAAAAGGTGTATGGAAACCATAGTAGTTACAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAATAACCATCAAAAAGGTGTATGGAAACCATAGTAGTTACAGGACA  850

seq1  TGGAAGTTAGGTTGAGGGAGTTGTGTACAGGAAAATGGCTTATGAAAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGAAGTTAGGTTGAGGGAGTTGTGTACAGGAAAATGGCTTATGAAA-GG  899

seq1  GAGTCAAATGGTCAAGCTGAAAGTGCCTAAGAGAGACTAAAATTG-TTTG  949
      ||||||||||||||||||| |||||||| |||||||||||||||| ||||
seq2  GAGTCAAATGGTCAAGCTG-AAGTGCCTTAGAGAGACTAAAATTGTTTTG  948

seq1  GTGGCTTTGACAAGTGTACCAGCCAACTTTCATAGGGATTTGCTATGAGT  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGGCTTTGACAAGTGTACCAGCCAACTTTCATA-GGATTTGCTATGAGT  997

seq1  TACCCTTGGCCTTTAAATGTTTCTAGTGAAGTGGGGGAAACGAGGTCATC  1049
      ||||||||  |||| |||| |||||||| |||||||||||||||||||||
seq2  TACCCTTG--CTTT-AATG-TTCTAGTG-AGTGGGGGAAACGAGGTCATC  1042

seq1  TCAAGCTTTAAAAACCTGGAGCGATCTTGCTTTTAGAAAATGAATTCCAT  1099
      || |||||  ||||||| ||||||||||||||||||||| |||  || ||
seq2  TC-AGCTT--AAAACCTTGAGCGATCTTGCTTTTAGAAATTGA--TCAAT  1087

seq1  CACTACATTGAATTTTTTAAAAGATGTATATAAATATCCA-TCTGGCTCC  1148
      | || ||||||  ||||||||  ||   ||  || ||||| ||||  | |
seq2  C-CTTCATTGA--TTTTTAAAGAAT---TAATAAGATCCATTCTG--TTC  1129

seq1  AGAAACTGTATAGCTCTACC  1168
      || |||||||||||||||||
seq2  AG-AACTGTATAGCTCTACC  1148

seq1: chr14_11530104_11531166
seq2: B6Ng01-011A13.g_66_1124 (reverse)

seq1  TGCCTGAGAAGTGTACGATTGTGAATGATTTATGGAGAC-TCAAGCTGAT  49
      |||||||||||||| ||||   || |||||||||||||| ||||||||||
seq2  TGCCTGAGAAGTGT-CGATGTGGATTGATTTATGGAGACTTCAAGCTGAT  49

seq1  GCATGTTGTACCACAGGTAGATGGTGGGTCACTGAGAAACTGCTTCACAG  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGTA-CACAGGTAGATGGTGGGTCACTGAGAAACTGCTTCACAG  98

seq1  TTTTCCCACAAGAATAAGGGCAAAAAGGTCACTTGCAGTGAAAGATCTTT  149
      |||| ||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TTTT-CCACAAGAATAAGGGCAAAAAGGTCAC-TGCAGTGAAAGATC-TT  145

seq1  TGGATTAGTCTTCTAAATCAATGTGTGAATTAAAGACAATTTACATATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGTCTTCTAAATCAATGTGTGAATTAAAGACAATTTACATATAA  195

seq1  ATAGGCTAATATTCTGGCTTTG-AAATTAAATGGATTTTTAAAAGATGTA  248
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  ATAGGCTAATATTCTGGCTTTGAAAATTAAATGGA-TTTTAAAAGATGTA  244

seq1  AGTAACTGCAGAAAAGGTCAGTTAAGCAGTAAGTACACATAATGTGATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGCAGAAAAGGTCAGTTAAGCAGTAAGTACACATAATGTGATTT  294

seq1  TTGAAAACTGCTTGTCTTGTTGGTTTATTAATATTTCGTATTCATGTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTGCTTGTCTTGTTGGTTTATTAATATTTCGTATTCATGTCAG  344

seq1  TGTCGTTCTAAAATTGCGTGCATAATTAGTGATGCGCCAAAGTCAAAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTTCTAAAATTGCGTGCATAATTAGTGATGCGCCAAAGTCAAAGAC  394

seq1  AGGCCACCAAAGTGAGAAACACACATCTCACAAAGCTGGGAAGGAAAGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCAAAGTGAGAAACACACATCTCACAAAGCTGGGAAGGAAAGAC  444

seq1  AAGTGGAGCGTCTCAACACAGAAATAGTCAAAATTAACCTTTGCCCACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGCGTCTCAACACAGAAATAGTCAAAATTAACCTTTGCCCACAT  494

seq1  ATTAATACACATTAGATTCAAATATATCACAACAACTTCCAAATACGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACACATTAGATTCAAATATATCACAACAACTTCCAAATACGCAT  544

seq1  AGATGACTCCAATAAAATGTACCTTGACATTTAGCCTTGCTAATCAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTCCAATAAAATGTACCTTGACATTTAGCCTTGCTAATCAATTT  594

seq1  ATAGTTCTTCCCAAACAGAAAAGCTGCAGGTGATCGGCTGCAGCCACGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTCCCAAACAGAAAAGCTGCAGGTGATCGGCTGCAGCCACGTG  644

seq1  ACAGCCCCTCTTCATAACCTGCAGGCCTCATCCCTGTAGTGTCTTCCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCTCTTCATAACCTGCAGGCCTCATCCCTGTAGTGTCTTCCTAG  694

seq1  AAACTGTGCTGATGGTGATGAAGAGAAGGGTGGGATTTCTCAAGTGCCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGCTGATGGTGATGAAGAGAAGGGTGGGATTTCTCAAGTGCCTA  744

seq1  CCTTACCACCTGCCACTGTGCATTAGTGGACCCTAAAAAGAGCTGGCCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCACCTGCCACTGTGCATTAGTGGACCCTAAAAAGAGCTGGCCCA  794

seq1  TAGCATAAAAGCAAGGAACACAGCGACTTGCGGGGGTCCACTGCAGGCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAAAGCAAGGAACACAGCGACTTGCGGGGGTCCACTGCAGGCAC  844

seq1  TCATGCATGGATGCTGACAGACATCTAGGTCTACACTTCATTCACTGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGGATGCTGACAGACATCTAGGTCTACACTTCATTCACTGAGT  894

seq1  CAGGGTCTTGACTGAACCTGGAGCTTGTCTATGACTAGCCTATCTAGCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTGACTGAACCTGGAGCTTGTCTATGACTAGCCTATCTAGCCA  944

seq1  GCCTAGTCTAGGGGTCCCATATGACTGCCTTCTAAGCATAGGAATTATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCTAGGGGTCCCATATGACTGCCTTCTAAGCATAGGAATTATAG  994

seq1  GTGGGTGGCTACACACTGGCATTTACATAGGTGCAAAGAATCTGACCCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGCTACACACTGGCATTTACATAGGTGCAAAGAATCTGACCCCT  1044

seq1  AGTCCTCATGAATTC  1063
      |||||||||||||||
seq2  AGTCCTCATGAATTC  1059