BAC Information

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BAC

Clone NameB6Ng01-011A19
Chromosome14 (Build37)
Map Location 109,009,161 - 109,110,100
singlet/doubletdoublet
Overlap geneEG668761
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A19.bB6Ng01-011A19.g
ACCDH846542DH846543
length1,2121,022
definitionDH846542|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A19, 5' end.DH846543|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,009,161 - 109,010,369)(109,109,070 - 109,110,100)
sequence
gaattcaaattgttcttaataattatgctacacaactgtgccctcctatt
attgaaatcttgagttttaaaactgataaaatggttgtcagaataattat
aacaaggagttccttggagggaaaagagaagtgtataaattaccatgcaa
gtctataaatctgaaagtgatctgctcttatgagctatttctctcccaag
aaattcactgttctggcagtcaatttacattcccacaatctggcatattc
ttaactatttgagaattaaatcagaatatgccatgttggcatgcctaaat
gtatttggaaatagcatcacaggctgagtatctagctagtcataggttac
tggaaaccataacagagctagaaaatatggcccatcctacgtatttagaa
attaaatcagagcataataacttggcagatctaaaatgatcttggaatgt
taccacagtggagtgatttggaagagctctaagtatctggaagagcatca
ttgtccaaagtccagacccacaaaaatctattcaaaatcacaagttctaa
aatgtgtttcatgataacttttataatatgtagtatatgtatatagtata
atatatgtacatatcatatatgtgtctctatgtaatatatgactaatatc
ttgtgtatatataatattttacatacatacagaatgatttagaaggatac
agaagaaaatcatagtatctaatgtaaacacaaaggcaaaaccaaagccc
atataagtttataatgcatgcctcttcatgtcattgtcctaataaccaaa
atgtaaaatatggagaggtttggtttcataagtaatttttatgatggtga
gtagaatctgctcttcttgtttgtttgcttatctatttacttatttattt
attatgcaaacactgttctgcctcatgtatgcctacctagcagaagaggg
tactgatctcatataggatggctatgagcctcatgaggttgctaagaatt
gaactcagaaacctcggaaagaaacagtcagcactctagcatctctcaac
ccaaatctttttctttctaaccttaacaggaaatatactcaatggagtga
acccacaatgagggaaagaattcctataggtaaattaaacttaggtcttt
aatgctcatgcatgtgaaagaaagaagtgttttccatatctcctggtttt
ttggttgaaaac
gaattctttactctcagacagacagtgttgtttgtcaatgaagcactcca
cgaccatcagtgtgctagcaatagaaaaaaaaactaataaaagaatcaac
aatattgcctcacagagttcataaacatgaagaatttttgacatataatg
tcaaacatactctctaaacctatattcaaggacatgagtaaagcttgata
gttgaaaatgaaattgtgcaagttgatacatattaggagcaagaccttcg
aaacttcggcattaatattttatttactcctgcctactgtttacctcttg
gaatgaccactaaatggataaggtaatccttgatttaactagtgttaaat
gaagataactatctccgtcacgtgtaattttttgtgtgttttgattgagt
tatatacagcccagtgcataatgaattttttgtttttttgtttttttttt
tttttggtttttgttgttgtcattttttagtatacaattttgtttattca
gggcatggagaggggagttgagcacatagaaagagagagggaggttgata
gggatagtgcaagaacaagaaggcaagagttcatcatgaattatagttcc
tgaaccaatgactagtagcaaagttacaatattctttataccaaccattt
tggagacctaataatttttatttattttaatgaaaaatgagggagttgca
tgccaccgtgtgcatatggaaatcagaaaataatgtgtaagattcagttc
tagggtcagaaactacttatattataactcctccaactaaggtatatatg
aataaattcatatattcatatgaatatgttcactttctattacctctggg
atccgtcttcttcccttttgaagttctttctacctactatcccagttgct
aactttttctttagaggttaggtaacatagaataattctaaagattgcta
ggagagaataaaaccttcaccatcacggtacgtctccacaaatacctcca
tgaaagctggtaatgattttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109009161_109010369
seq2: B6Ng01-011A19.b_29_1240

seq1  GAATTCAAATTGTTCTTAATAATTATGCTACACAACTGTGCCCTCCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGTTCTTAATAATTATGCTACACAACTGTGCCCTCCTATT  50

seq1  ATTGAAATCTTGAGTTTTAAAACTGATAAAATGGTTGTCAGAATAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATCTTGAGTTTTAAAACTGATAAAATGGTTGTCAGAATAATTAT  100

seq1  AACAAGGAGTTCCTTGGAGGGAAAAGAGAAGTGTATAAATTACCATGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAGTTCCTTGGAGGGAAAAGAGAAGTGTATAAATTACCATGCAA  150

seq1  GTCTATAAATCTGAAAGTGATCTGCTCTTATGAGCTATTTCTCTCCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAATCTGAAAGTGATCTGCTCTTATGAGCTATTTCTCTCCCAAG  200

seq1  AAATTCACTGTTCTGGCAGTCAATTTACATTCCCACAATCTGGCATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTGTTCTGGCAGTCAATTTACATTCCCACAATCTGGCATATTC  250

seq1  TTAACTATTTGAGAATTAAATCAGAATATGCCATGTTGGCATGCCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATTTGAGAATTAAATCAGAATATGCCATGTTGGCATGCCTAAAT  300

seq1  GTATTTGGAAATAGCATCACAGGCTGAGTATCTAGCTAGTCATAGGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGAAATAGCATCACAGGCTGAGTATCTAGCTAGTCATAGGTTAC  350

seq1  TGGAAACCATAACAGAGCTAGAAAATATGGCCCATCCTACGTATTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCATAACAGAGCTAGAAAATATGGCCCATCCTACGTATTTAGAA  400

seq1  ATTAAATCAGAGCATAATAACTTGGCAGATCTAAAATGATCTTGGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCAGAGCATAATAACTTGGCAGATCTAAAATGATCTTGGAATGT  450

seq1  TACCACAGTGGAGTGATTTGGAAGAGCTCTAAGTATCTGGAAGAGCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGTGGAGTGATTTGGAAGAGCTCTAAGTATCTGGAAGAGCATCA  500

seq1  TTGTCCAAAGTCCAGACCCACAAAAATCTATTCAAAATCACAAGTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAAAGTCCAGACCCACAAAAATCTATTCAAAATCACAAGTTCTAA  550

seq1  AATGTGTTTCATGATAACTTTTATAATATGTAGTATATGTATATAGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTCATGATAACTTTTATAATATGTAGTATATGTATATAGTATA  600

seq1  ATATATGTACATATCATATATGTGTCTCTATGTAATATATGACTAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTACATATCATATATGTGTCTCTATGTAATATATGACTAATATC  650

seq1  TTGTGTATATATAATATTTTACATACATACAGAATGATTTAGAAGGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATATATAATATTTTACATACATACAGAATGATTTAGAAGGATAC  700

seq1  AGAAGAAAATCATAGTATCTAATGTAAACACAAAGGCAAAACCAAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAATCATAGTATCTAATGTAAACACAAAGGCAAAACCAAAGCCC  750

seq1  ATATAAGTTTATAATGCATGCCTCTTCATGTCATTGTCCTAATAACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTTTATAATGCATGCCTCTTCATGTCATTGTCCTAATAACCAAA  800

seq1  ATGTAAAATATGGAGAGGTTTGGTTTCCATAAGTAATTTTTATGATGGTG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTAAAATATGGAGAGGTTTGGTTT-CATAAGTAATTTTTATGATGGTG  849

seq1  AGTAGAATCTGCTCTTCTTGTTTGTTTGCTTATCTATTTACTTATTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATCTGCTCTTCTTGTTTGTTTGCTTATCTATTTACTTATTTATT  899

seq1  TATTATGCAAACACTGTTCTGCCTTCATGTATGCCTACCTAGCAGAAGAG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATTATGCAAACACTGTTCTGCC-TCATGTATGCCTACCTAGCAGAAGAG  948

seq1  GGTACCTGATCTCATTATA-GATGGCTATGAGCCTCCATGAGGTTGCTAA  999
      |||| ||||||||| |||| ||||||||||||||| ||||||||||||||
seq2  GGTA-CTGATCTCA-TATAGGATGGCTATGAGCCT-CATGAGGTTGCTAA  995

seq1  GAATTGAACTCAG-AACCTCGGAAAG-AACAGTCAGCACTCTTAGCATCT  1047
      ||||||||||||| |||||||||||| |||||||||||||| ||||||||
seq2  GAATTGAACTCAGAAACCTCGGAAAGAAACAGTCAGCACTC-TAGCATCT  1044

seq1  CTCCAACCCAAATC-TTCTCTTCTTAACC-TAACAAGATATATACTCATA  1095
      || ||||||||||| || ||||  ||||| ||||| || |||||||||  
seq2  CT-CAACCCAAATCTTTTTCTTTCTAACCTTAACAGGAAATATACTCAAT  1093

seq1  TGAGTGAAACCACAATGA-GGAAAG-ATTTCTATAGGTTATTTAACTTTA  1143
       ||||||| ||||||||| |||||| ||| |||||||| | ||||  |||
seq2  GGAGTGAACCCACAATGAGGGAAAGAATTCCTATAGGTAAATTAAACTTA  1143

seq1  GGTCTTTAATGCTCATGCATGTGAAAGAAAGAAGTGTTTTCCATA---CC  1190
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  GGTCTTTAATGCTCATGCATGTGAAAGAAAGAAGTGTTTTCCATATCTCC  1193

seq1  CAGTTTTTTTGGTGAAAAC  1209
        ||||||| | |||||||
seq2  TGGTTTTTTGGTTGAAAAC  1212

seq1: chr14_109109070_109110100
seq2: B6Ng01-011A19.g_64_1085 (reverse)

seq1  GTAAAATCATTTACCAGTTTTCATGGAGGTGATTTGTGGAGTACGTA-CG  49
      ||||||||| ||||||| |||||||||||| |||||||||| ||||| ||
seq2  GTAAAATCA-TTACCAGCTTTCATGGAGGT-ATTTGTGGAG-ACGTACCG  47

seq1  TGATTGGTTGAAAGGTTTTATTCTCTACTAGCAATCTTTTAGAATTATTC  99
      ||| ||||   ||||||||||||||| ||||||||| |||||||||||||
seq2  TGA-TGGT--GAAGGTTTTATTCTCTCCTAGCAATC-TTTAGAATTATTC  93

seq1  TTATGTTACCTAACCTTCTAAAGAAAAAGTGTAGCAACTGGGATAGTAGG  149
       |||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  -TATGTTACCTAACC-TCTAAAGAAAAAGT-TAGCAACTGGGATAGTAGG  140

seq1  TAGAAAGAACTTCAAAAGGGAAGAAGACGGATCCCAGAGGTAATAGAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAACTTCAAAAGGGAAGAAGACGGATCCCAGAGGTAATAGAAAG  190

seq1  TGAACATATTCATATGAATATATGAATTTATTCATATATACCTTAGTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATATTCATATGAATATATGAATTTATTCATATATACCTTAGTTGG  240

seq1  AGGAGTTATAATATAAGTAGTTTCTGACCCTAGAACTGAATCTTACACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTATAATATAAGTAGTTTCTGACCCTAGAACTGAATCTTACACAT  290

seq1  TATTTTCTGATTTCCATATGCACACGGTGGCATGCAACTCCCTCATTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGATTTCCATATGCACACGGTGGCATGCAACTCCCTCATTTTT  340

seq1  CATTAAAATAAATAAAAATTATTAGGTCTCCAAAATGGTTGGTATAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATAAATAAAAATTATTAGGTCTCCAAAATGGTTGGTATAAAGA  390

seq1  ATATTGTAACTTTGCTACTAGTCATTGGTTCAGGAACTATAATTCATGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAACTTTGCTACTAGTCATTGGTTCAGGAACTATAATTCATGAT  440

seq1  GAACTCTTGCCTTCTTGTTCTTGCACTATCCCTATCAACCTCCCTCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTGCCTTCTTGTTCTTGCACTATCCCTATCAACCTCCCTCTCTC  490

seq1  TTTCTATGTGCTCAACTCCCCTCTCCATGCCCTGAATAAACAAAATTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTGCTCAACTCCCCTCTCCATGCCCTGAATAAACAAAATTGTA  540

seq1  TACTAAAAAATGACAACAACAAAAACCAAAAAAAAAAAAAAACAAAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAAAATGACAACAACAAAAACCAAAAAAAAAAAAAAACAAAAAAA  590

seq1  CAAAAAATTCATTATGCACTGGGCTGTATATAACTCAATCAAAACACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATTCATTATGCACTGGGCTGTATATAACTCAATCAAAACACACA  640

seq1  AAAAATTACACGTGACGGAGATAGTTATCTTCATTTAACACTAGTTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTACACGTGACGGAGATAGTTATCTTCATTTAACACTAGTTAAAT  690

seq1  CAAGGATTACCTTATCCATTTAGTGGTCATTCCAAGAGGTAAACAGTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTACCTTATCCATTTAGTGGTCATTCCAAGAGGTAAACAGTAGG  740

seq1  CAGGAGTAAATAAAATATTAATGCCGAAGTTTCGAAGGTCTTGCTCCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTAAATAAAATATTAATGCCGAAGTTTCGAAGGTCTTGCTCCTAA  790

seq1  TATGTATCAACTTGCACAATTTCATTTTCAACTATCAAGCTTTACTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCAACTTGCACAATTTCATTTTCAACTATCAAGCTTTACTCATG  840

seq1  TCCTTGAATATAGGTTTAGAGAGTATGTTTGACATTATATGTCAAAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAATATAGGTTTAGAGAGTATGTTTGACATTATATGTCAAAAATT  890

seq1  CTTCATGTTTATGAACTCTGTGAGGCAATATTGTTGATTCTTTTATTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTTTATGAACTCTGTGAGGCAATATTGTTGATTCTTTTATTAGT  940

seq1  TTTTTTTTCTATTGCTAGCACACTGATGGTCGTGGAGTGCTTCATTGACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTATTGCTAGCACACTGATGGTCGTGGAGTGCTTCATTGACA  990

seq1  AACAACACTGTCTGTCTGAGAGTAAAGAATTC  1031
      ||||||||||||||||||||||||||||||||
seq2  AACAACACTGTCTGTCTGAGAGTAAAGAATTC  1022