BAC Information

Click to search

BAC

Clone NameB6Ng01-011B12
Chromosome14 (Build37)14 (Build37)
Map Location 44,738,989 - 44,740,14343,921,691 - 43,922,714
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638
Downstream gene4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011B12.bB6Ng01-011B12.g
ACCDH846576DH846577
length1,1321,036
definitionDH846576|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B12, 5' end.DH846577|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,738,989 - 44,740,143)(43,921,691 - 43,922,714)
sequence
gaattcattgtgcatgactaattttcagctggccttgatgtgtagaatta
ttctattatatctgaatttcctatttctttcttcttctgctcaggtgtag
tctgtgaacctccatgtttcttgatgtaatgattcttaaactatgaaaaa
ttgagatataagggctcagtatagcacagtttaaaatgttccaggtgtat
gctgtgtgttctcatcttggaaacaatgtaatgataactgtgtaatggta
gttccagattaatgcttaactttcaaagaaagtttgaagaaattattaga
aaatgaaagagataacattgggaactgagaaatgtaaaagttattgatgt
tatgaaattagtttcacacaacatttgagagtagtcctgaatagtaaagt
agagaatatgtcatacggtatgccagtcaaactaagtcaaaacactggga
ctcttattgagagttattgtgtgcaatgtacagaatcagatagccagcag
aagtactgagttaagggttaagcacctctaacccattcagtgctttggta
gaggctttcccatcagagccctaccctgcaaagcagggtttggatctcca
gtacacaccagctactcaaatggataccatgtttccttttgtaatgaaat
ggaggagtccattcagccaccatataggaaggctctatgtcattttcaga
gccactgcaattgcaagattttaacttggcaccagctctattgtcttatg
ccagtattctctgcattgcccactttcctgtggtagtgtcagtgctgagc
tctgcactatgatttgtccctgttacctggagttgctgctcccaaaacct
gcttctctgatccaaagagaaacttcaaatcacattctaaactgctttgg
ctctgaaaggaaatgggtgcttctacttttttacaacaactaaaaatacc
tcagaaacacttttctatagtatgatccattccactaattatagcacaca
aagaagacaaagtccattattaggatgagaatagctcttcatgagatatg
tttctcaagatccacattgcatctatagtcctcttcatttagtccaggtg
aaccaatactcttctggcttggatggcatgca
gaattctatgaaatgcattgtttgcatttgtgacaatgttgcaatgtgca
cataatagatgctataacagcctatgtaatattacatggcagtaaataat
attatacaaaagcttgaggcctgagttcagagtcctatcacctctatcta
aagcatctcatggagtcatgcacctgtaataacagcagtgggcgacacct
aggcaaatccctgagtacactggggagtgtagccaattgctgaggtccct
gatcagtgagagatctattcttcaaaattacaatgttactgtgtttgagg
cagattcccagtagtgacctctgacctcaacttgtatgcacaaccccaca
ccccttaaaagaacactgtcatgaagcattactgactaatgtattgatgt
catcccttgtaaacttagtatgcttcatcatgtctgcggcttactctgtt
caatcaactttctgacagttcattgcttggtgtcttctctccaaaagttg
gattctgcagagtatattgaattatttctgtgtttttttttttttatcat
cttcttacactccaggttttatcctcctccaggtctactatctgactctt
ccccaccccatacctccatccagaccccgtctccacctggatgttcccac
actatccacaacagtcaccacactagccctaccctcccttgggcctccag
tcttttaagggttaagtgcatcttctctgactgaacttagacctggtagt
cctttgctgtatatgtgtttgtgtcataaacactgatgaatgctgcctgg
ttggtggtccatggtctgagaggtctcctggatccaggttaattgtgtct
gctggtcctgctacagggtcaccctgcctctcagcatatgtgttcttttg
ggtccaagttacctcaatatggatgatagtaatccacccatttgcatgca
aatctcagaatgtccttgggcttagtagctagtagtattccattgggtga
atgaacaatattttctatatccaatcttctgctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44738989_44740143
seq2: B6Ng01-011B12.b_45_1176

seq1  GAATTCATTGTGCATGACTAATTTTCAGCTGGCCTTGATGTGTAGAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCATGACTAATTTTCAGCTGGCCTTGATGTGTAGAATTA  50

seq1  TTCTATTATATCTGAATTTCCTATTTCTTTCTTCTTCTGCTCAGGTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTATATCTGAATTTCCTATTTCTTTCTTCTTCTGCTCAGGTGTAG  100

seq1  TCTGTGAACCTCCATGTTTCTTGATGTAATGATTCTTAAACTATGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACCTCCATGTTTCTTGATGTAATGATTCTTAAACTATGAAAAA  150

seq1  TTGAGATATAAGGGCTCAGTATAGCACAGTTTAAAATGTTCCAGGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATATAAGGGCTCAGTATAGCACAGTTTAAAATGTTCCAGGTGTAT  200

seq1  GCTGTGTGTTCTCATCTTGGAAACAATGTAATGATAACTGTGTAATGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTTCTCATCTTGGAAACAATGTAATGATAACTGTGTAATGGTA  250

seq1  GTTCCAGATTAATGCTTAACTTTCAAAGAAAGTTTGAAGAAATTATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGATTAATGCTTAACTTTCAAAGAAAGTTTGAAGAAATTATTAGA  300

seq1  AAATGAAAGAGATAACATTGGGAACTGAGAAATGTAAAAGTTATTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGAGATAACATTGGGAACTGAGAAATGTAAAAGTTATTGATGT  350

seq1  TATGAAATTAGTTTCACACAACATTTGAGAGTAGTCCTGAATAGTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTAGTTTCACACAACATTTGAGAGTAGTCCTGAATAGTAAAGT  400

seq1  AGAGAATATGTCATACGGTATGCCAGTCAAACTAAGTCAAAACACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATGTCATACGGTATGCCAGTCAAACTAAGTCAAAACACTGGGA  450

seq1  CTCTTATTGAGAGTTATTGTGTGCAATGTACAGAATCAGATAGCCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTGAGAGTTATTGTGTGCAATGTACAGAATCAGATAGCCAGCAG  500

seq1  AAGTACTGAGTTAAGGGTTAAGCACCTCTAACCCATTCAGTGCTTTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGAGTTAAGGGTTAAGCACCTCTAACCCATTCAGTGCTTTGGTA  550

seq1  GAGGCTTTCCCATCAGAGCCCTACCCTGCAAAGCAGGGTTTGGATCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTCCCATCAGAGCCCTACCCTGCAAAGCAGGGTTTGGATCTCCA  600

seq1  GTACACACCAGCTACTCAAATGGATACCATGTTTCCTTTTGTAATGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACCAGCTACTCAAATGGATACCATGTTTCCTTTTGTAATGAAAT  650

seq1  GGAGGAGTCCATTCAGCCACCATATAGGAAGGCTCTATGTCATTTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTCCATTCAGCCACCATATAGGAAGGCTCTATGTCATTTTCAGA  700

seq1  GCCACTGCAATTGCAAGATTTTAACTTGGCACCAGCTCTATTGTCTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCAATTGCAAGATTTTAACTTGGCACCAGCTCTATTGTCTTATG  750

seq1  CCAGTATTCTCTGCATTGCCCACTTTCCTGTGGTAGTGTCAGTGCTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTCTCTGCATTGCCCACTTTCCTGTGGTAGTGTCAGTGCTGAGC  800

seq1  TCTGCACTATGATTTGTCCCTGTTACCTGGAGTTGCTGCTCCCAAAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTATGATTTGTCCCTGTTACCTGGAGTTGCTGCTCCCAAAACCT  850

seq1  GCTTCTCTGATCCAAAGAGAAACTTCAAATCACATTCTAAACTGCTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTGATCCAAAGAGAAACTTCAAATCACATTCTAAACTGCTTTGG  900

seq1  CTCTGAAAGGAAATGGGTGCTTCTACTTTTTTACAACAAACTAAAAATAC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTGAAAGGAAATGGGTGCTTCTACTTTTTTACAAC-AACTAAAAATAC  949

seq1  CTCAAGAAACAC-TTTCTATAGGTATGATCCATTCCACTAA-TATAGCAC  998
      ||| |||||||| |||||||| ||||||||||||||||||| ||||||||
seq2  CTC-AGAAACACTTTTCTATA-GTATGATCCATTCCACTAATTATAGCAC  997

seq1  ACAAAGAAGGACAAAAGTCCA-TATTAGGGGATGGAGAAATAGCTCTTCA  1047
      |||||||| ||| |||||||| |||||  |||| ||| ||||||||||||
seq2  ACAAAGAA-GAC-AAAGTCCATTATTA--GGAT-GAG-AATAGCTCTTCA  1041

seq1  ATTGAGAATATGTTTCTCAAAGACCCACATGGCATCTAATAGTCCTCTGT  1097
        |||| ||||||||||| |||| |||||| |||||| |||||||||| |
seq2  --TGAG-ATATGTTTCTC-AAGATCCACATTGCATCT-ATAGTCCTCT-T  1085

seq1  CATTTTAGTTCCAGGTGAAACCCAATAACTTCTTCTGGCCTTTGGGAAAT  1147
      || ||||| ||||||||||  ||||||   |||||||||  ||||   ||
seq2  CA-TTTAG-TCCAGGTGAA--CCAATA--CTCTTCTGGC--TTGG---AT  1124

seq1  GGCATGCA  1155
      ||||||||
seq2  GGCATGCA  1132

seq1: chr14_43921691_43922714
seq2: B6Ng01-011B12.g_67_1094

seq1  GAATTCTATGAAATGCATTGTTTGCATTTGTGACAATGTTGCAATGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAATGCATTGTTTGCATTTGTGACAATGTTGCAATGTGCA  50

seq1  CATAATAGATGCTATAACAGCCTATGTAATAATACATGGCAGTACATAAT  100
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CATAATAGATGCTATAACAGCCTATGTAATATTACATGGCAGTAAATAAT  100

seq1  ATTATACAAAAGCTTGAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTATACAAAAGCTTGAGGCCTGAGTTCAGAGTCCTATCACCTCTATCTA  150

seq1  AAGCTTCTCATGGAGTCATGCACCTGTAATAACAGCAGTGGGGGGACACC  200
      |||| |||||||||||||||||||||||||||||||||| ||| ||||||
seq2  AAGCATCTCATGGAGTCATGCACCTGTAATAACAGCAGT-GGGCGACACC  199

seq1  TAGGCAAATCCCTGAGTACACTGGGTAGTGTAGCCAATTGCTGAGGTCCC  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGCAAATCCCTGAGTACACTGGGGAGTGTAGCCAATTGCTGAGGTCCC  249

seq1  TGATCAGTGAGAGATCTGTTCTTCAAAATTACAATGTTACTGTGTTTGAC  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TGATCAGTGAGAGATCTATTCTTCAAAATTACAATGTTACTGTGTTTGAG  299

seq1  GCAGATTCCCAGTAGTGACCTCTGACCCCAACTTGTATGCACAACCCCAC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAGATTCCCAGTAGTGACCTCTGACCTCAACTTGTATGCACAACCCCAC  349

seq1  ACCCCTTAAAAGAACATTGTCATGAAGCATTACTGACTAATGTATGGATG  400
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  ACCCCTTAAAAGAACACTGTCATGAAGCATTACTGACTAATGTATTGATG  399

seq1  TCATCCCTTGTAAACTTAGTATGCTTCATCATGTCTGCGGCTTCCACTCT  450
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  TCATCCCTTGTAAACTTAGTATGCTTCATCATGTCTGCGGCTT--ACTCT  447

seq1  GTTCAAACAACTTTCTGACAGTTCATTGCTTGGTGTCTTCTCTCCACAAG  500
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTCAATCAACTTTCTGACAGTTCATTGCTTGGTGTCTTCTCTCCAAAAG  497

seq1  TTGGTTTCTGCAGAGTAATTTGAATTATTTC-------TATTTTTTTAAT  543
      |||| ||||||||||||  ||||||||||||       | ||||||| ||
seq2  TTGGATTCTGCAGAGTATATTGAATTATTTCTGTGTTTTTTTTTTTTTAT  547

seq1  CATCTTCTTACACTCCAGGTTTTATCCTCCTCCAGGTCTACTATCTGACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTACACTCCAGGTTTTATCCTCCTCCAGGTCTACTATCTGACT  597

seq1  CTTCCCCACCCCATACCTCCATCCAGACCCCGTCTCTACCTGGATGTTCC  643
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCCCCACCCCATACCTCCATCCAGACCCCGTCTCCACCTGGATGTTCC  647

seq1  CACGCCATCCACAATTGTCACCACACTAGCCCTACCCTCCCTTGGGCCTC  693
      ||| | ||||||||  ||||||||||||||||||||||||||||||||||
seq2  CACACTATCCACAACAGTCACCACACTAGCCCTACCCTCCCTTGGGCCTC  697

seq1  CAGTCTTTTAAGGGTTAGGTGCATCTTCTCTGACTGAACTTAGACCTGGT  743
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTAAGGGTTAAGTGCATCTTCTCTGACTGAACTTAGACCTGGT  747

seq1  AGTCCTTTGCTGTATATGTGTTTGGGGCCTCATAAACGCTGATGTATGCT  793
      |||||||||||||||||||||||| |   |||||||| |||||| |||||
seq2  AGTCCTTTGCTGTATATGTGTTTGTG---TCATAAACACTGATGAATGCT  794

seq1  GCCTGGTTGGTGGTTCAGGGTCTGAGAGGTCT-CTGGATCTAAGTTAATT  842
      |||||||||||||| || |||||||||||||| ||||||| | |||||||
seq2  GCCTGGTTGGTGGTCCATGGTCTGAGAGGTCTCCTGGATCCAGGTTAATT  844

seq1  GTGTCTGCTGGTCCTGCTACAGGGTCACCCTGCCCCTCAGCATACGTGTT  892
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GTGTCTGCTGGTCCTGCTACAGGGTCACCCTGCCTCTCAGCATATGTGTT  894

seq1  CTTTTGGGTCCGAGTTACCTC---ATGG-TCCGAGTAGTTCGACCCATGT  938
      ||||||||||| |||||||||   |||| |   ||||  || |||||| |
seq2  CTTTTGGGTCCAAGTTACCTCAATATGGATGATAGTA-ATCCACCCATTT  943

seq1  ACATGCAAATCTCAGGATGTCCTTTTGCTTCTTAGCTTAGTAGTATTCCA  988
       |||||||||||||| ||||||||  ||||  |||| |||||||||||||
seq2  GCATGCAAATCTCAGAATGTCCTTGGGCTTAGTAGC-TAGTAGTATTCCA  992

seq1  TTGGGTAAATGAACCATATTTTCTATATCCATTCTT  1024
      |||||| ||||||| |||||||||||||||| ||||
seq2  TTGGGTGAATGAACAATATTTTCTATATCCAATCTT  1028