BAC Information

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BAC

Clone NameB6Ng01-011K04
Chromosome14 (Build37)
Map Location 29,070,512 - 29,071,460
singlet/doubletsinglet
Overlap geneErc2
Upstream geneArhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011K04.b
ACCDH846963
length1,035
definitionDH846963|Mus musculus domesticus DNA, BAC clone: B6Ng01-011K04, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccccagattatgcatgtttctgatgtcatgctcttcctggggca
cttgaactatgctagaaggggttttgctactgatattgctctggcccttc
cacttctcactcttaagaacattccattttaatggggagacaggttggga
aattaaactgtatactgattgccgggatagatccagagggctcctcaagc
tccagggtgagggaggagagttgtgattttaaatatggtggcctaccaag
ggccttagagactgaggttgggggttttgtcattgataacggaaatgtga
ggttgtggaatgaaaaccacaatatggaatgactaatgttagtacctaaa
agaccaaagagtttgttttgataaaaatgggcttccaggggtgcaggata
gaggaggaccatatgtgttttctggcctgcatcctaatgagagcaagatg
caacaatgaaatcagtgctttctaaagtatgaatgtcatggaacaaccca
tacgggagtattatttgaaaataagctattcttggaagtataattatgct
gttaaatatgactatccaaattgtaaccaccattaacatcacttaaggta
agagctctatgaacaacaaaaatgaggaaaacaattaccgaattttagaa
tagaaggtttttcctctctagaaaagacaacagcgatcttgctcacaatg
cctattgcttgtgcttatgagcgttataaattacatagtttgatcacact
tttcttttgctgatcctccaatacccctgaaagtgctgcatctctcacat
gacacatcttaaaatcatgtctataagtaggagagatctcatttaatgtc
atactcctctaagcttttctccaagcaagcaatctggaagcccaccttga
ctccattttccttcctaatccgttttccgcccttcctgcctgtgtactaa
ggcatcattcgccaccaacgaagcctgctccatccttcccagaccagaag
agcatgttatttcttactataaccaagcattttaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29070512_29071460
seq2: B6Ng01-011K04.b_129_1078

seq1  TTGCTCTGGCCCTTCCA--TCTAAGT-TCAAG----TTTGGTTTTCCCAA  43
      |||||||||||||||||  ||| | | | |||    ||   ||||   | 
seq2  TTGCTCTGGCCCTTCCACTTCTCACTCTTAAGAACATTCCATTTT--AAT  48

seq1  GAGTTGACA--TTGATCAACTCAGCTTTTCCTTCCTTCTCTGATTACTGG  91
      | |  ||||  |||   || | | ||         |   |||||| | ||
seq2  GGGGAGACAGGTTGGGAAATTAAACT--------GTATACTGATTGCCGG  90

seq1  G-GGGATCCAGAGGGCTCCTCAAGCTCATGCCTAATGTGGGCTATTTGTG  140
      |   |||||||||||||||||||||||  |  | | |  ||  | |||||
seq2  GATAGATCCAGAGGGCTCCTCAAGCTCCAGGGTGAGGGAGGAGAGTTGTG  140

seq1  AAACCAAAAAAAGGTAGTCTACCTATATCCTATCATATATGAGG--CAGA  188
       |    ||| | ||| | ||||| |   |||   | |  |||||    | 
seq2  -ATTTTAAATATGGTGGCCTACCAAGGGCCTTAGAGA-CTGAGGTTGGGG  188

seq1  TATTTATCATAGAAATAGTCATTAAGTCAACAATATTTGTTTAAGTCA--  236
        ||| |||| || |  |  |  | || |       ||||  ||   |  
seq2  GTTTTGTCATTGATAACGGAA--ATGTGA-----GGTTGTGGAATGAAAA  231

seq1  -GACAATTTGACATCATTAACATTATTTAAGAAAATACCAAAGAGTTTTT  285
        ||||| ||  || | |||  ||| |    |||| |||||||||||| |
seq2  CCACAATATGGAATGACTAATGTTAGTACCTAAAAGACCAAAGAGTTTGT  281

seq1  TAAGAGAAAGATGGGCTTCCATCTGTGCAGGATAGAGGAGGACCAAACAT  335
      |  || ||| |||||||||||   ||||||||||||||||||||| |  |
seq2  TTTGATAAAAATGGGCTTCCAGGGGTGCAGGATAGAGGAGGACCATATGT  331

seq1  GTTTTCTCAGATACATCCTAATTATAGTAATATTCAATAATGGAATAAGT  385
      |||||||    | ||||||||| | || || || ||| |||| ||| |||
seq2  GTTTTCTGGCCTGCATCCTAATGAGAGCAAGATGCAACAATGAAATCAGT  381

seq1  GCTTTCTAGACTTTGGATATCATGGAACAAAACATAGGGTAGTATTTTTT  435
      |||||||| | | || || |||||||||||  |||| || |||||| |||
seq2  GCTTTCTAAAGTATGAATGTCATGGAACAACCCATACGGGAGTATTATTT  431

seq1  GAAAATAACATATTCTTGGCAGTATAATTATGCTGTTAAATATGACTATC  485
      ||||||||  ||||||||| ||||||||||||||||||||||||||||||
seq2  GAAAATAAGCTATTCTTGGAAGTATAATTATGCTGTTAAATATGACTATC  481

seq1  CAAATTGTAACCACCATTAACATCACTTAAGGTAAGAGCT-TATGAGCAA  534
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CAAATTGTAACCACCATTAACATCACTTAAGGTAAGAGCTCTATGAACAA  531

seq1  CAAAAATGAGGAAAACAATTACCAAATTTTAGAATAGAAGGTTTTTCCTC  584
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAAAATGAGGAAAACAATTACCGAATTTTAGAATAGAAGGTTTTTCCTC  581

seq1  TCTAGAAAAGACAACAGCAATCTTGCTCACAATGCCTATTGCTTGTGCTT  634
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGACAACAGCGATCTTGCTCACAATGCCTATTGCTTGTGCTT  631

seq1  ATGAGCGTTATAAATTACTTAGTTTGATCACACTTTTCTTTTGCTGATCC  684
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGAGCGTTATAAATTACATAGTTTGATCACACTTTTCTTTTGCTGATCC  681

seq1  TCCAATACCCCTGAAAGTGCTGCATCTCTCACATGACACATCTTAAAATC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATACCCCTGAAAGTGCTGCATCTCTCACATGACACATCTTAAAATC  731

seq1  ATGTATATAAGTAGGAGAGATCCAATTTAAATGTCAGACTCCTCTTAGCT  784
      |||| |||||||||||||||||  |||| ||||||| |||||||| ||||
seq2  ATGTCTATAAGTAGGAGAGATCTCATTT-AATGTCATACTCCTCTAAGCT  780

seq1  TTTCTTCAGGCAAACAATCTGGAAG-CCACCTTGCCTCCATTTTCCTCCC  833
      ||||| || |||| ||||||||||| |||||||| |||||||||||| ||
seq2  TTTCTCCAAGCAAGCAATCTGGAAGCCCACCTTGACTCCATTTTCCTTCC  830

seq1  TAATCC-TTTTCCGCCCTTCCTGCCTTTGTACTAAGGCATCATT-GTCAC  881
      |||||| ||||||||||||||||||| ||||||||||||||||| | |||
seq2  TAATCCGTTTTCCGCCCTTCCTGCCTGTGTACTAAGGCATCATTCGCCAC  880

seq1  CTACGAAGCCTGCTCCATCC-TCCCAGACCAGAAGAGCATG-TCTTTCTT  929
      | |||||||||||||||||| |||||||||||||||||||| | ||||||
seq2  CAACGAAGCCTGCTCCATCCTTCCCAGACCAGAAGAGCATGTTATTTCTT  930

seq1  ACTATAACCAAGCATTTTAA  949
      ||||||||||||||||||||
seq2  ACTATAACCAAGCATTTTAA  950