BAC Information

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BAC

Clone NameB6Ng01-012J06
Chromosome14 (Build37)
Map Location 79,298,795 - 79,455,282
singlet/doubletdoublet
Overlap gene1300010F03Rik, LOC629709
Upstream geneEpsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649
Downstream geneLOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J06.bB6Ng01-012J06.g
ACCDH847633DH847634
length990744
definitionDH847633|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J06, 5' end.DH847634|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,298,795 - 79,299,780)(79,454,541 - 79,455,282)
sequence
gaattctgttttatgcttttaggtccctttttagttttgagttgattttt
gtataagctgtaagataaagtttcagttccattcctttgcacatggaaat
agtttccccagcatcatttgttgaaagattatcttatccccatcatgtct
tcttggtaccctgtctccatagttaaccatatgcattggaatttatttct
ggcttctttattttgttgcactggaccacagtctgtttttgtaccagtac
catactgtattgattccagcatcactgtctttcttacatatagaatctag
gtttatatatgcctgtgtacacacatataagaaagcagaaggggtccaca
tgggtgagtggagaaagataggcaagacgagggaggaaggatggggaaga
cagcggggcttgagcaatgatacacatgtaggaaagtgttatatacaaaa
gccattgttttgtatacctgctaaaaatacaaaaggaaagaaaaatattg
cagttttcatctaggtgtagctgtgttggataaagactctcagtgcccct
catggctgaggtttatatatgaactgtttctctttgacatctctgagagc
cttgttatcttcaccttcctgttctcagtgctcagcatataataggtcct
cactaagtagggctgtgtgcctgaatttattttactcatttagccccata
tcctatgttgtaaatagcgaggacttacttgggctttgaatgccttgttt
tgtatccccacctccatgaacagattgacacatgcaggtagaggggacag
ttgcagtgaggagtctcgtggcacttcctttataatctctgaatatatgg
gaggatgatctgactcctggtaggcctgggtttaggtctttctgagtaat
tttttctaataatgtgaatgagtgttttgcttgtatgtatatatgtgtag
tataaggcatgcctgggggcccgagaaagatcatataagt
gaattctttaatttgacaggtgatgggtttcttgagttagccccttgggt
ctggctcgtcactatcctgaccctcttccaagcttccacgatcatggtct
tgtgggatgatggtttgtccccaggcttgatagttccctccacttcacca
agaatatatcccaaagaatcatggttttgactttaataaaaagcaaatta
aatgtcccactaaatgtaaagaactgtggaaatacattctggccgtttat
tggtgcccttcattatgcctttgtaagatattagggggtgtggttatatg
tccatttctgaattcacaggtcttataccttcactgtcagttatatttta
tgctatcttttaatttaaaattaattttcagttttgaataaattaagaac
aaagtttcattagctgacttaaatccactattaatattctagcactagag
ggtgggtggggagaggaaaaatacttgttcacacagatttttatagcagc
ataatggatttctcacctcagctctcacatcttttaagggcaacaacttg
acaccttccagcaccgaaaaggaacaagaagctcttgcatcactgtcagc
gtgaaaagaagaaacccttttctgcagtaacggtgctgcacagtgccttt
atgatcactcaacttaagtgaattctaagtccaaaaaaagcgaatgaaac
tgctctataaggtttgggtatctgatagttgcaacatgtcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79298795_79299780
seq2: B6Ng01-012J06.b_47_1036

seq1  GAATTCTGTTTTATGCTTTTAGGTCCCTTTTTAGTTTTGAGTTGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTATGCTTTTAGGTCCCTTTTTAGTTTTGAGTTGATTTTT  50

seq1  GTATAAGCTGTAAGATAAAGTTTCAGTTCCATTCCTTTGCACATGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCTGTAAGATAAAGTTTCAGTTCCATTCCTTTGCACATGGAAAT  100

seq1  AGTTTCCCCAGCATCATTTGTTGAAAGATTATCTTATCCCCATCATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCCAGCATCATTTGTTGAAAGATTATCTTATCCCCATCATGTCT  150

seq1  TCTTGGTACCCTGTCTCCATAGTTAACCATATGCATTGGAATTTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTACCCTGTCTCCATAGTTAACCATATGCATTGGAATTTATTTCT  200

seq1  GGCTTCTTTATTTTGTTGCACTGGACCACAGTCTGTTTTTGTACCAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTTATTTTGTTGCACTGGACCACAGTCTGTTTTTGTACCAGTAC  250

seq1  CATACTGTATTGATTCCAGCATCACTGTCTTTCTTACATATAGAATCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTATTGATTCCAGCATCACTGTCTTTCTTACATATAGAATCTAG  300

seq1  GTTTATATATGCCTGTGTACACACATATAAGAAAGCAGAAGGGGTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATGCCTGTGTACACACATATAAGAAAGCAGAAGGGGTCCACA  350

seq1  TGGGTGAGTGGAGAAAGATAGGCAAGACGAGGGAGGAAGGATGGGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGTGGAGAAAGATAGGCAAGACGAGGGAGGAAGGATGGGGAAGA  400

seq1  CAGCGGGGCTTGAGCAATGATACACATGTAGGAAAGTGTTATATACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGGCTTGAGCAATGATACACATGTAGGAAAGTGTTATATACAAAA  450

seq1  GCCATTGTTTTGTATACCTGCTAAAAATACAAAAGGAAAGAAAAATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTTTTGTATACCTGCTAAAAATACAAAAGGAAAGAAAAATATTG  500

seq1  CAGTTTTCATCTAGGTGTAGCTGTGTTGGATAAAGACTCTCAGTGCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCATCTAGGTGTAGCTGTGTTGGATAAAGACTCTCAGTGCCCCT  550

seq1  CATGGCTGAGGTTTATATATGAACTGTTTCTCTTTGACATCTCTGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGAGGTTTATATATGAACTGTTTCTCTTTGACATCTCTGAGAGC  600

seq1  CTTGTTATCTTCACCTTCCTGTTCTCAGTGCTCAGCATATAATAGGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATCTTCACCTTCCTGTTCTCAGTGCTCAGCATATAATAGGTCCT  650

seq1  CACTAAGTAGGGCTGTGTGCCTGAATTTATTTTACTCATTTAGCCCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTAGGGCTGTGTGCCTGAATTTATTTTACTCATTTAGCCCCATA  700

seq1  TCCTATGTTGTAAATAGCGAGGACTTACTTGGGCTTTGAATGCCTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTTGTAAATAGCGAGGACTTACTTGGGCTTTGAATGCCTTGTTT  750

seq1  TGTATCCCCACCTCCATGAACAGATTGACACATGCAGGTAGAGGGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCCACCTCCATGAACAGATTGACACATGCAGGTAGAGGGGACAG  800

seq1  TTGCAGTGAGGAGTCTCGTGGCACTTCCTTTATAATCTCTGAATATATTG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGCAGTGAGGAGTCTCGTGGCACTTCCTTTATAATCTCTGAATATATGG  850

seq1  GAGGATGATCTGACTCCTGGTAGGCCTGGGTTTAGGTCTTTCTGAGTAA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGGATGATCTGACTCCTGGTAGGCCTGGGTTTAGGTCTTTCTGAGTAAT  900

seq1  TTTTTCTAATAATGTGAATGAGTGTTTTGCTTGTATGTATATATGTGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAATAATGTGAATGAGTGTTTTGCTTGTATGTATATATGTGTAG  950

seq1  TAT-ATGCATGCCT-GGTGCCCGTG-AAGATCATAAAAGT  986
      ||| | |||||||| || ||||| | ||||||||| ||||
seq2  TATAAGGCATGCCTGGGGGCCCGAGAAAGATCATATAAGT  990

seq1: chr14_79454541_79455282
seq2: B6Ng01-012J06.g_64_807 (reverse)

seq1  ATTTGACATGTTGCATACTATCAGAT-GCCAAACCTTATAGAGCAGTTTC  49
      ||||||||||||||| ||||||||||  ||||||||||||||||||||||
seq2  ATTTGACATGTTGCA-ACTATCAGATACCCAAACCTTATAGAGCAGTTTC  49

seq1  A-TCGGCCTTTTTGGACTTAGAATTCAGCTTAAGTTGAGTGATCCT-AAG  97
      | |||   ||||||||||||||||||| |||||||||||||||| | |||
seq2  ATTCGCTTTTTTTGGACTTAGAATTCA-CTTAAGTTGAGTGATCATAAAG  98

seq1  GCACTGTGCAGCACCGTTACTGCAGAAACTGGCTTCTTC-CTTCACGCTG  146
      ||||||||||||||||||||||||||||  || ||||||  |||||||||
seq2  GCACTGTGCAGCACCGTTACTGCAGAAAAGGGTTTCTTCTTTTCACGCTG  148

seq1  ACAGTGATGCAAGAGCTTCTTGTTCCTTTTCGGTGCTGGAAGGTGTCAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATGCAAGAGCTTCTTGTTCCTTTTCGGTGCTGGAAGGTGTCAAG  198

seq1  TTGTTGCCCTTAAAAGATGTGAGAGCTGAGGTGAGAAATCCATTATGCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCCTTAAAAGATGTGAGAGCTGAGGTGAGAAATCCATTATGCTG  248

seq1  CTATAAAAATCTGTGTGAACAAGTATTTTTCCTCTCCCCACCCACCCTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAATCTGTGTGAACAAGTATTTTTCCTCTCCCCACCCACCCTCT  298

seq1  AGTGCTAGAATATTAATAGTGGATTTAAGTCAGCTAATGAAACTTTGTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAATATTAATAGTGGATTTAAGTCAGCTAATGAAACTTTGTTC  348

seq1  TTAATTTATTCAAAACTGAAAATTAATTTTAAATTAAAAGATAGCATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTCAAAACTGAAAATTAATTTTAAATTAAAAGATAGCATAAA  398

seq1  ATATAACTGACAGTGAAGGTATAAGACCTGTGAATTCAGAAATGGACATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTGACAGTGAAGGTATAAGACCTGTGAATTCAGAAATGGACATA  448

seq1  TAACCACACCCCCTAATATCTTACAAAGGCATAATGAAGGGCACCAATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACACCCCCTAATATCTTACAAAGGCATAATGAAGGGCACCAATAA  498

seq1  ACGGCCAGAATGTATTTCCACAGTTCTTTACATTTAGTGGGACATTTAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCAGAATGTATTTCCACAGTTCTTTACATTTAGTGGGACATTTAAT  548

seq1  TTGCTTTTTATTAAAGTCAAAACCATGATTCTTTGGGATATATTCTTGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTATTAAAGTCAAAACCATGATTCTTTGGGATATATTCTTGGT  598

seq1  GAAGTGGAGGGAACTATCAAGCCTGGGGACAAACCATCATCCCACAAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGGGAACTATCAAGCCTGGGGACAAACCATCATCCCACAAGAC  648

seq1  CATGATCGTGGAAGCTTGGAAGAGGGTCAGGATAGTGACGAGCCAGACCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCGTGGAAGCTTGGAAGAGGGTCAGGATAGTGACGAGCCAGACCC  698

seq1  AAGGGGCTAACTCAAGAAACCCATCACCTGTCAAATTAAAGAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTAACTCAAGAAACCCATCACCTGTCAAATTAAAGAATTC  744