BAC Information

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BAC

Clone NameB6Ng01-012O16
Chromosome14 (Build37)
Map Location 24,102,161 - 24,222,759
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012O16.bB6Ng01-012O16.g
ACCDH847869DH847870
length745661
definitionDH847869|Mus musculus domesticus DNA, BAC clone: B6Ng01-012O16, 5' end.DH847870|Mus musculus domesticus DNA, BAC clone: B6Ng01-012O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,102,161 - 24,102,907)(24,222,106 - 24,222,759)
sequence
gaattcattcctaaaagatttatttttattctttttaaatccatgtatat
gtctgtgtgggtgtttttgtcaacatgagtgcagtacctatagaggcagg
agataaagactgctctaagtaagggctggaaattgatcccccatagtact
gaagagcagcaagcattcttaactactgaaccatctcactagtcccccta
aattctttaaatccagagaatttcttaaatttaatacagttaaatatggt
tttctttttagtttgtcttatgattttttccatcttgctacagaatttcc
caaggacttggttgtggcctcatagagcatgcatgcccttggtttgatcc
taaggacaagaaagagagagaggagagagagagagagaggagaggataaa
tggaagggaggagggaatagaaagtaagaaagagagaaagtagacaagaa
tagaaagggtgaagggaaaggaaagtgagagaaacaaaatggaaagacgg
gagagggaagagaaaggatctcaaacaaggagtgccaagaatgttagtac
aaagtactattcacttactccgactgaaatagctacaatttgtaaatgat
aattataataattttaagtacctatttaatatctattaaagttatagaac
agcaatgaagaaacatagtctccaagacacaaatctttaatccaaggtaa
gccagggagtctaattaccatgaggttccttctttttctcaaatt
gaattctgtggttgatctaaagatgctgctgtcttcccttccttgtttgt
cattcggttgcctgagtctttgtgggtagagacgtatattggaaaggcga
gatttcactacttccaggatgatgtcctgctgaggtccttccaatccaga
cttcagcttcctaatgcaaacatgctgattttatctacctgttattcctc
attgatttttattcatccacttttctcctaaggaagggtttgctccagct
gtagctagttgcctagactactggcttatccctctgtctacgtagagtca
actcacagcttaaatcttgagagctcaggatccctttagaacccccaccc
acccactttttctatttttccaccccttctgggaactccaatggtaactc
tgtattgcctgggcatgtggcagacaaatgccaccatttcccaatgttta
tgatcttcctggccaaattcccatgtagctggtgggagcgactatgtgct
caagtgaggtcctccgacccttgatcctcttgatcctagtgtctttactc
agatcatgggggaggatgtaaagcaatttttttatacagacaccatttgc
tttttaatgttgatatggcaaagtctgaattataaaataccttccatcta
taaagatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24102161_24102907
seq2: B6Ng01-012O16.b_47_791

seq1  GAATTCATTCCTAAAAGATTTATTTTTATTCTTTTTAAATCCATGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTAAAAGATTTATTTTTATTCTTTTTAAATCCATGTATAT  50

seq1  GTCTGTGTGGGTGTTTTTGTCAACATGAGTGCAGTACCTATAGAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGGGTGTTTTTGTCAACATGAGTGCAGTACCTATAGAGGCAGG  100

seq1  AGATAAAGACTGCTCTAAGTAAGGGCTGGAAATTGATCCCCCATAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGACTGCTCTAAGTAAGGGCTGGAAATTGATCCCCCATAGTACT  150

seq1  GAAGAGCAGCAAGCATTCTTAACTACTGAACCATCTCACTAGTCCCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCAAGCATTCTTAACTACTGAACCATCTCACTAGTCCCCCTA  200

seq1  AATTCTTTAAATCCAGAGAATTTCTTAAATTTAATACAGTTAAATATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAAATCCAGAGAATTTCTTAAATTTAATACAGTTAAATATGGT  250

seq1  TTTCTTTTTAGTTTGTCTTATGATTTTTTCCATCTTGCTACAGAATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAGTTTGTCTTATGATTTTTTCCATCTTGCTACAGAATTTCC  300

seq1  CAAGGACTTGGTTGTGGCCTCATAGAGCATGCATGCCCTTGGTTTGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTTGGTTGTGGCCTCATAGAGCATGCATGCCCTTGGTTTGATCC  350

seq1  TAAGGACAAGAAAGAGAGAGAGGAGAGAGAGAGAGAGAGGAGAGGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAAGAAAGAGAGAGAGGAGAGAGAGAGAGAGAGGAGAGGATAAA  400

seq1  TGGAAGGGAGGAGGGAATAGAAAGTAAGAAAGAGAGAAAGTAGACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGAGGAGGGAATAGAAAGTAAGAAAGAGAGAAAGTAGACAAGAA  450

seq1  TAGAAAGGGTGAAGGGAAAGGAAAGTGAGAGAAACAAAATGGAAAGACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGTGAAGGGAAAGGAAAGTGAGAGAAACAAAATGGAAAGACGG  500

seq1  GAGAGGGAAGAGAAAGGATCTCAAACAAGGAGTGCCAAGAATGTTAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGAGAAAGGATCTCAAACAAGGAGTGCCAAGAATGTTAGTAC  550

seq1  AAAGTACTATTCACTTACTCCGACTGAAATAGCTACAATTTGTAAATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTATTCACTTACTCCGACTGAAATAGCTACAATTTGTAAATGAT  600

seq1  AATAATAATAATTTTAAGTAGCCATTTAATATCTATTGAAGTTATAGAAC  650
      ||| |||||||||||||||| | |||||||||||||| ||||||||||||
seq2  AATTATAATAATTTTAAGTACCTATTTAATATCTATTAAAGTTATAGAAC  650

seq1  AGCAAATGAAGAAACATA-TCTCCAAGACACAAATCTTTAAACCAAGGTA  699
      ||| |||||||||||||| |||||||||||||||||||||| ||||||||
seq2  AGC-AATGAAGAAACATAGTCTCCAAGACACAAATCTTTAATCCAAGGTA  699

seq1  AGCCTAGGGAGTCTAAAGTACCATGAGATTCCTCCCTTTTCTCAAATT  747
      |||| ||||||||| || ||||||||| ||||| | ||||||||||||
seq2  AGCC-AGGGAGTCT-AATTACCATGAGGTTCCTTCTTTTTCTCAAATT  745

seq1: chr14_24222106_24222759
seq2: B6Ng01-012O16.g_68_728 (reverse)

seq1  TAACATC-TTATAGATGGAAGGTA-TTTATAATTCAGACTTTGCCATATC  48
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  TAACATCTTTATAGATGGAAGGTATTTTATAATTCAGACTTTGCCATATC  50

seq1  AACATT-AAAAGC-AATGGTGTCTGTCT-AAAAAATTGCTTTACATCCT-  94
      |||||| |||||| |||||||||||| | |||||||||||||||||||| 
seq2  AACATTAAAAAGCAAATGGTGTCTGTATAAAAAAATTGCTTTACATCCTC  100

seq1  CCCCATGATCTGAGT-AAGACACTTGGATCAAGAGGATCAAGGGTCGGAG  143
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CCCCATGATCTGAGTAAAGACACTAGGATCAAGAGGATCAAGGGTCGGAG  150

seq1  GACCTCACTTGAGCACATAGTCGCTCCCACCAGCTACATGGGAATTTGGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACTTGAGCACATAGTCGCTCCCACCAGCTACATGGGAATTTGGC  200

seq1  CAGGAAGATCATAAACATTGGGAAATGGTGGCATTTGTCTGCCACATGCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATCATAAACATTGGGAAATGGTGGCATTTGTCTGCCACATGCC  250

seq1  CTGGCAATACAGAGTTACCATTGGAGTTCCCAGAAGGGGTGGAAAAATAG  293
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATACAGAGTTACCATTGGAGTTCCCAGAAGGGGTGGAAAAATAG  300

seq1  AAAAAGTGGGTGGGTGGGGGTTCTAAAGGGATCCTGAGCTCTCAAGATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGGGTGGGTGGGGGTTCTAAAGGGATCCTGAGCTCTCAAGATTT  350

seq1  AAGCTGTGAGTTGACTCTACGTAGACAGAGGGATAAGCCAGTAGTCTAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGAGTTGACTCTACGTAGACAGAGGGATAAGCCAGTAGTCTAGG  400

seq1  CAACTAGCTACAGCTGGAGCAAACCCTTCCTTAGGAGAAAAGTGGATGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGCTACAGCTGGAGCAAACCCTTCCTTAGGAGAAAAGTGGATGAA  450

seq1  TAAAAATCAATGAGGAATAACAGGTAGATAAAATCAGCATGTTTGCATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAATGAGGAATAACAGGTAGATAAAATCAGCATGTTTGCATTA  500

seq1  GGAAGCTGAAGTCTGGATTGGAAGGACCTCAGCAGGACATCATCCTGGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGAAGTCTGGATTGGAAGGACCTCAGCAGGACATCATCCTGGAA  550

seq1  GTAGTGAAATCTCGCCTTTCCAATATACGTCTCTACCCACAAAGACTCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAAATCTCGCCTTTCCAATATACGTCTCTACCCACAAAGACTCAG  600

seq1  GCAACCGAATGACAAACAAGGAAGGGAAGACAGCAGCATCTTTAGATCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGAATGACAAACAAGGAAGGGAAGACAGCAGCATCTTTAGATCAA  650

seq1  CCACAGAATTC  654
      |||||||||||
seq2  CCACAGAATTC  661