BAC Information

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BAC

Clone NameB6Ng01-013J23
Chromosome13 (Build37)14 (Build37)
Map Location 59,888,896 - 59,889,34399,393,161 - 99,393,550
singlet/doubletsingletsinglet
Overlap geneZcchc6
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J23.bB6Ng01-013J23.g
ACCDH848392DH848393
length868890
definitionDH848392|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J23, 5' end.DH848393|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,888,896 - 59,889,343)(99,393,161 - 99,393,550)
sequence
gaattcactctgtagaccaggctggcctactcagatatccgcctgcctct
gctccccaattctgggattaaaggtgtgcaccaccactgtccggctcaat
ttatctttttttaaaaatgaattttattataaaaagcaaacaaaaaaaac
cttgtgaataaaaacatcacacaccaaaattaaccagacccaaagtctat
acatttcaatacacttctatacagttgatgattctttcatttaaacattc
ttcttctctcatatcttatattccaactgcagtttcctcttccaccattc
ctcccagccctcctctgataagttatttctcagccaatgaaatgagccaa
ttcaagctagattagagtatatataaaggcaggtgttttttttaggaaaa
cactatcaagtaagttcacttttcccaaggttccaaggatagggacttga
ccatgagaagtgagagaaggcattgcagagagagacagagagagagagag
aggtgggggttatcaaggaaaacgtctctggtggagggggagcacagtcc
ctgggctagaaagttcagagtacagggtgcagtatgccaagtagagatta
agggatgctggtaaaacctggagaccatgtccacattggtgtgttaaata
tgtacctcggctgcttgtctgagtctgaatcctcccccttccaacctccc
ctctccttctacgtcctcttctcttgttcagaaaagaggcagcctcccag
ggatgtcaaccaaacatggcatgacaagttacaataagactgggtacaaa
cccttttattaaaggctggacaaagcttcccagtagaaagaaaaagagtc
tcaagagtaggtaaagga
gaattctttgtttagttctgtaccccattttttaaaggtcaagattttat
tgtcttcataacaaaatctgcttagaaatggatcacttggccctttctct
tcttgtcgcctcccaattcaaaatgcttgcatctcttaatagccagtcct
cttagatctgcagttgggctcaacacactccagtctcagcacaatcttct
ttgtagttttagcctttttgcggaaaaaaggcttagtctgcccaccatag
ccactctgtttcctgtcataacaccgctttccctgggcatacaaagaatc
cttgcccttcttgtactgtgtcaccttgtggggttggtacttcccacatt
tcttgcagaatgtctggcgggttttaggtacattcaccatgttcgcagga
gccctagcagctcagaaagagcctgttccccatttttaatagggttattt
ggctctctagagtctaacttctttagttctttgtatatatttgatattag
ctttctgtcggatataagattggtaaggactttttcccaacctgttggtt
gcagttttgtcctactgacagtgtctttggccttacagaagatttgcaat
tttatgaggtcccatttgttgattcttgatcttacagcacaagccactgc
tgttctgttcaaaaaattttctcctgtgcccatgtgctcaaggctcttct
ccaccttcttttctattagttcctgtgtatctggttttataaggaagtcc
ttgatgcacttggacttgagctttgtacaaggagacagaatggttcaatt
tgctttgttctacatgctaactgccagttgagctagcaccatttgttgaa
atgttgtctttttcccactgatggtttagctcctttgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59888896_59889343
seq2: B6Ng01-013J23.b_49_247

seq1  TCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  50
      ||||||||||||||||||||||||   ||||||| |||||||||||||||
seq2  TCACTCTGTAGACCAGGCTGGCCT---ACTCAGATATCCGCCTGCCTCTG  47

seq1  CCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTTATT  100
       ||||| | | ||||||||||||| |||| ||||||||| |||||| | |
seq2  -CTCCCCAATTCTGGGATTAAAGGTGTGCACCACCACTGTCCGGCTCAAT  96

seq1  TTGTC-TTCTTAAAAACTGAATCCCTACCACTTAGGAACAACTAACTATA  149
      || || || || |||| |||||   ||    |||  || | | ||| | |
seq2  TTATCTTTTTTTAAAAATGAAT-TTTA----TTATAAAAAGCAAACAAAA  141

seq1  CACGTCAATGGTTTCAGTGGACTGTTGAATTCAGTAGGGTGACTTGATTC  199
       |    ||             ||  |||||                    
seq2  AA----AA------------CCTTGTGAAT--------------------  155

seq1  AACTGCTTCGCTCCTGGGTGCCGGAGTCACACAGAGGTTTGGGCACAAGG  249
      ||   | || | |       ||  | | |  ||||        | ||| |
seq2  AAAAACATCACAC------ACCAAAATTAACCAGA--------CCCAAAG  191

seq1  TCCAT-CAGGAAAGGACTCTCTCTGGGGTCAACACTGAGAATCATTACAG  298
      || || ||                                          
seq2  TCTATACA------------------------------------------  199

seq1  ACAGTCCTTTTCCCAACAGTATGTAAAGGGCTAAGAATCCACCTCTACTG  348
                                                        
seq2  --------------------------------------------------  199

seq1  GCACTCTCCATCCCTCAGTAAAGACTTATTTTTATTTTAGTTTTAAACTT  398
                                                        
seq2  --------------------------------------------------  199

seq1  TCTTATAAAAATATCACCCAGTAGAATTAACCAGACCCAAAGTCTATACA  448
                                                        
seq2  --------------------------------------------------  199

seq1: chr14_99393161_99393550
seq2: B6Ng01-013J23.g_99_486

seq1  AAAGGTCAAGATTTTATTGTCTTCATAACAAAATCTGCTTAGAACTGGAT  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGGTCAAGATTTTATTGTCTTCATAACAAAATCTGCTTAGAAATGGAT  50

seq1  CACTTGGCCCTTTCTCTTCTTGTCGCCTCCCAATTCAAAATGCTTGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCCCTTTCTCTTCTTGTCGCCTCCCAATTCAAAATGCTTGCATC  100

seq1  TCTTAATAGCCAGCATCCTCTTAGATCTGCAGTTGGGCTCAACGCACTCC  150
      |||||||||||||  |||||||||||||||||||||||||||| ||||||
seq2  TCTTAATAGCCAG--TCCTCTTAGATCTGCAGTTGGGCTCAACACACTCC  148

seq1  AGTCTCAGCACAATCTTCTTTGTAGTTTTAGCCTTTTTGCGGAAAATAGG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTCTCAGCACAATCTTCTTTGTAGTTTTAGCCTTTTTGCGGAAAAAAGG  198

seq1  CTTAGTCTGCCCACCATAGCTACTCTGTTTCCTGTCATAGCGCTGCTTTC  250
      |||||||||||||||||||| |||||||||||||||||| | | ||||||
seq2  CTTAGTCTGCCCACCATAGCCACTCTGTTTCCTGTCATAACACCGCTTTC  248

seq1  CCTGGGCATACAAAGAGTCCTTGCCCTTCTTGTACTGTGTCACCTTGTGG  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTGGGCATACAAAGAATCCTTGCCCTTCTTGTACTGTGTCACCTTGTGG  298

seq1  GGTTGGTGCTTCCCACATTTCTTGCAGAATGTCCGGCGAATTTTAGGCAC  350
      ||||||| ||||||||||||||||||||||||| ||||  ||||||| ||
seq2  GGTTGGTACTTCCCACATTTCTTGCAGAATGTCTGGCGGGTTTTAGGTAC  348

seq1  GTTCACCATGTTCGCAGGAGCGCTAGCAGCTCAGAAAGAG  390
       |||||||||||||||||||| ||||||||||||||||||
seq2  ATTCACCATGTTCGCAGGAGCCCTAGCAGCTCAGAAAGAG  388