BAC Information

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BAC

Clone NameB6Ng01-013K18
Chromosome14 (Build37)
Map Location 68,272,083 - 68,476,866
singlet/doubletdoublet
Overlap geneCdca2, Kctd9, Gnrh1, Dock5
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K18.bB6Ng01-013K18.g
ACCDH848430DH848431
length1,125898
definitionDH848430|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K18, 5' end.DH848431|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,272,083 - 68,273,217)(68,475,964 - 68,476,866)
sequence
gaattcagagatagagcactgtgtctagtgcggtacagtagtgaagagca
gtgtgcagatcgaagccgatgatgtccatgatgcaggaaatggcaatgat
gcaggagatggccatgatgctggagatggccatgatgcaagtaacagacc
ccaggtacacacatcctaatttgttacagggtaacttcctgacagagctt
gcctttttgcctttattttcttcaaagttgagtgtgtgtgtgtgtaatgt
atttgagtttaaattactgcaagttttatactatctgcttttagtgtttt
tgtttttttaaaaaacacacaaaagaaacaactttagcactgggaaattt
tcctctggttgtttggcattcccacaagaaatttttcttttaaagaaata
ataatagccatcatagtaatgattcttcttatttttctaaagtggactcc
ttggaccacactgactagaacagttgtagagaaaaagatcaggggttaac
ttgagtcctcttgggttatgaacactgacaagggacttcagagaaacctt
catccaatttttaccccaaattaaatcaagagcattgataattagtttct
atcaaagtcatctagggggaaatgaaagaaactgaaaaagccataagctg
tctttacttcttcattaatatttgctcccaggtgcgggtcaaataaacca
cactcacacttttaaatgagctgcatgaaagttgatggattgtttttctc
tttgggtttccgccacccgtggagctggttattcccactccagctcaaag
aaagccaggctccctccatttcctacaaagtgaaccccatttgctttcaa
agttgcccctaccacatagctggttccaaatgggtttcttggagagtcct
cacaacaaaattcttggctctcacagacaggacatgagctgatggagagg
gaggctttcaggaagtcactgctggactagaggagctacccaagcacaat
ctgacagaccagaaccctactgaattcctgtttgaggtttccttccattt
gcatggcaccagaggaacccatgagggaagaaacgaaggggtgagacccc
taaatgctcacactctgggctctag
gaattcatctaacacaaggcctattggaagatacagtagcccgtacctca
tgtagtgggttcaacaccatgctgaaagtaaaaagccaataccagtgagt
gtccccattacagccatcctcaggttgcaaaaccagaggcccctaagtca
gggaccacttgtagttttccatagttagcatgtaagaaatgtttcatgag
tcacatctgtgttaatatattgtcttactctacctgagtactctgcatgt
ccttgctatctttctcctattgataattgtaggaacacgatggggggatt
taagtgagtaaacacagttatgcctaatgtgagtgaggaaattggtttgt
ctccaattgccatgctggggagcagtaggagagaagaaaccctcgttctt
tctagaggagagcatggaccagtcctcaggcgactgggtgaggtcatatg
gcgctaacctctccacgaaacgaagcagctgccagatggaaccaggtaat
aacctggcttggtcgctggcactttcagagagaatcaacacaagaaagta
gagtctgggcttaccctgtgccatgcaaaaacttagtttagtttgtggac
catgctgttttcagttccttgcttttctttttttgctcacgtttacctat
gttccagttctctaaagtatatgcccccctccaggggcagattggtttct
ttccaaccacagctgctgtgttcctgcattggattgtcaggagtgtggtg
gtcaggaaaaggcagctcctatcctgtgcagtaagtgtgcatccttttgg
tccttgtagcagcatgagaccgtgatcccgggagtgcccctgtttcagag
ctcacaacacgctacgagaatgtggcccgtcacctggcgcaagctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_68272083_68273217
seq2: B6Ng01-013K18.b_46_1170

seq1  GAATTCAGAGATAGAGCACTGTGTCTAGTGCGGTACAGTAGTGAAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATAGAGCACTGTGTCTAGTGCGGTACAGTAGTGAAGAGCA  50

seq1  GTGTGCAGATCGAAGCCGATGATGTCCATGATGCAGGAAATGGCAATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGATCGAAGCCGATGATGTCCATGATGCAGGAAATGGCAATGAT  100

seq1  GCAGGAGATGGCCATGATGCTGGAGATGGCCATGATGCAAGTAACAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGATGGCCATGATGCTGGAGATGGCCATGATGCAAGTAACAGACC  150

seq1  CCAGGTACACACATCCTAATTTGTTACAGGGTAACTTCCTGACAGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACACACATCCTAATTTGTTACAGGGTAACTTCCTGACAGAGCTT  200

seq1  GCCTTTTTGCCTTTATTTTCTTCAAAGTTGAGTGTGTGTGTGTGTAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTGCCTTTATTTTCTTCAAAGTTGAGTGTGTGTGTGTGTAATGT  250

seq1  ATTTGAGTTTAAATTACTGCAAGTTTTATACTATCTGCTTTTAGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTTTAAATTACTGCAAGTTTTATACTATCTGCTTTTAGTGTTTT  300

seq1  TGTTTTTTTAAAAAACACACAAAAGAAACAACTTTAGCACTGGGAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTAAAAAACACACAAAAGAAACAACTTTAGCACTGGGAAATTT  350

seq1  TCCTCTGGTTGTTTGGCATTCCCACAAGAAATTTTTCTTTTAAAGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTTGTTTGGCATTCCCACAAGAAATTTTTCTTTTAAAGAAATA  400

seq1  ATAATAGCCATCATAGTAATGATTCTTCTTATTTTTCTAAAGTGGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCCATCATAGTAATGATTCTTCTTATTTTTCTAAAGTGGACTCC  450

seq1  TTGGACCACACTGACTAGAACAGTTGTAGAGAAAAAGATCAGGGGTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCACACTGACTAGAACAGTTGTAGAGAAAAAGATCAGGGGTTAAC  500

seq1  TTGAGTCCTCTTGGGTTATGAACACTGACAAGGGACTTCAGAGAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCTCTTGGGTTATGAACACTGACAAGGGACTTCAGAGAAACCTT  550

seq1  CATCCAATTTTTACCCCAAATTAAATCAAGAGCATTGATAATTAGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATTTTTACCCCAAATTAAATCAAGAGCATTGATAATTAGTTTCT  600

seq1  ATCAAAGTCATCTAGGGGGAAATGAAAGAAACTGAAAAAGCCATAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTCATCTAGGGGGAAATGAAAGAAACTGAAAAAGCCATAAGCTG  650

seq1  TCTTTACTTCTTCATTAATATTTGCTCCCAGGTGCGGGTCAAATAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTTCTTCATTAATATTTGCTCCCAGGTGCGGGTCAAATAAACCA  700

seq1  CACTCACACTTTTAAATGAGCTGCATGAAAGTTGATGGATTGTTTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACTTTTAAATGAGCTGCATGAAAGTTGATGGATTGTTTTTCTC  750

seq1  TTTGGGTTTCCGCCACCCGTGGAGCTGGTTATTCCCACTCCAGCTCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTCCGCCACCCGTGGAGCTGGTTATTCCCACTCCAGCTCAAAG  800

seq1  AAAGCCAGGCTCCCTCCATTTCCTACAAAGTGAACCCCATTTGCTTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGCTCCCTCCATTTCCTACAAAGTGAACCCCATTTGCTTTCAA  850

seq1  AGTTGCCCCTACCACATAGCTGGTTCCAAATGGGTTTCTTGGAGAAGTCC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTGCCCCTACCACATAGCTGGTTCCAAATGGGTTTCTTGGAG-AGTCC  899

seq1  TCACAACAAAATTCTTGGCTCTCACAGACAGGACATGAGGCTGATGGAGA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCACAACAAAATTCTTGGCTCTCACAGACAGGACATGA-GCTGATGGAGA  948

seq1  GGGAGGCTTTCAGGAAGTCACTGGCTGGAACCTAGAGGAGCTACCCAAGC  1000
      |||||||||||||||||||||| ||||||  |||||||||||||||||||
seq2  GGGAGGCTTTCAGGAAGTCACT-GCTGGA--CTAGAGGAGCTACCCAAGC  995

seq1  AC-ATCTGACAGGACCAGAACCCTACTGATTTCCTGTTTGAGGTTTCCTT  1049
      || |||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  ACAATCTGACA-GACCAGAACCCTACTGAATTCCTGTTTGAGGTTTCCTT  1044

seq1  -CATTTGCATGGCACCCAGGAGAACCCATGAGGGAGAGAACAGAAAGGGG  1098
       ||||||||||||| ||||  |||||||||||||| |||| |  ||||||
seq2  CCATTTGCATGGCA-CCAGAGGAACCCATGAGGGA-AGAA-ACGAAGGGG  1091

seq1  TTGAAGACCCCCTAGATGCTCACAATCTGGGCTCTAG  1135
      |   ||| |||||| ||||||||| ||||||||||||
seq2  T--GAGA-CCCCTAAATGCTCACACTCTGGGCTCTAG  1125

seq1: chr14_68475964_68476866
seq2: B6Ng01-013K18.g_71_968 (reverse)

seq1  TAGAGCTTGCGCCAGATGACGG--CCCATTCTCGTAGCGTGTTTGTGAGC  48
      ||||||||||||||| ||||||  | ||||||||||||||| ||||||||
seq2  TAGAGCTTGCGCCAGGTGACGGGCCACATTCTCGTAGCGTG-TTGTGAGC  49

seq1  TCCTGAACCAGGGGCAACTCCCCGGGAATCACGGTCTCATGCTGCCTACA  98
      | ||||| ||||||| ||||||  || ||||||||||||||||| |||||
seq2  T-CTGAAACAGGGGC-ACTCCC--GGGATCACGGTCTCATGCTG-CTACA  94

seq1  AGGAACCAAAAGGATGCACACTTTACTGCACAGGATAGGAGCTGCC-TTT  147
      ||| ||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AGG-ACCAAAAGGATGCACAC-TTACTGCACAGGATAGGAGCTGCCTTTT  142

seq1  CCTGACCACCACACTCTTGACAATCCAATGCAGGAACACAGCAGCTGTGG  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTGACCACCACACTCCTGACAATCCAATGCAGGAACACAGCAGCTGTGG  192

seq1  TTGGAAAGAAACCAATCTGCCCCTGGAGGGGGGCATATACTTTAGAGAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGAAACCAATCTGCCCCTGGAGGGGGGCATATACTTTAGAGAAC  242

seq1  TGGAACATAGGTAAACGTGAGCAAAAAAAGAAAAGCAAGGAACTGAAAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATAGGTAAACGTGAGCAAAAAAAGAAAAGCAAGGAACTGAAAAC  292

seq1  AGCATGGTCCACAAACTAAACTAAGTTTTTGCATGGCACAGGGTAAGCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTCCACAAACTAAACTAAGTTTTTGCATGGCACAGGGTAAGCCC  342

seq1  AGACTCTACTTTCTTGTGTTGATTCTCTCTGAAAGTGCCAGCGACCAAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTACTTTCTTGTGTTGATTCTCTCTGAAAGTGCCAGCGACCAAGC  392

seq1  CAGGTTATTACCTGGTTCCATCTGGCAGCTGCTTCGTTTCGTGGAGAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATTACCTGGTTCCATCTGGCAGCTGCTTCGTTTCGTGGAGAGGT  442

seq1  TAGCGCCATATGACCTCACCCAGTCGCCTGAGGACTGGTCCATGCTCTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCCATATGACCTCACCCAGTCGCCTGAGGACTGGTCCATGCTCTCC  492

seq1  TCTAGAAAGAACGAGGGTTTCTTCTCTCCTACTGCTCCCCAGCATGGCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGAACGAGGGTTTCTTCTCTCCTACTGCTCCCCAGCATGGCAA  542

seq1  TTGGAGACAAACCAATTTCCTCACTCACATTAGGCATAACTGTGTTTACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACAAACCAATTTCCTCACTCACATTAGGCATAACTGTGTTTACT  592

seq1  CACTTAAATCCCCCCATCGTGTTCCTACAATTATCAATAGGAGAAAGATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAATCCCCCCATCGTGTTCCTACAATTATCAATAGGAGAAAGATA  642

seq1  GCAAGGACATGCAGAGTACTCAGGTAGAGTAAGACAATATATTAACACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACATGCAGAGTACTCAGGTAGAGTAAGACAATATATTAACACAG  692

seq1  ATGTGACTCATGAAACATTTCTTACATGCTAACTATGGAAAACTACAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTCATGAAACATTTCTTACATGCTAACTATGGAAAACTACAAGT  742

seq1  GGTCCCTGACTTAGGGGCCTCTGGTTTTGCAACCTGAGGATGGCTGTAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGACTTAGGGGCCTCTGGTTTTGCAACCTGAGGATGGCTGTAAT  792

seq1  GGGGACACTCACTGGTATTGGCTTTTTACTTTCAGCATGGTGTTGAACCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACACTCACTGGTATTGGCTTTTTACTTTCAGCATGGTGTTGAACCC  842

seq1  ACTACATGAGGTACGGGCTACTGTATCTTCCAATAGGCCTTGTGTTAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATGAGGTACGGGCTACTGTATCTTCCAATAGGCCTTGTGTTAGAT  892

seq1  GAATTC  903
      ||||||
seq2  GAATTC  898