BAC Information

Click to search

BAC

Clone NameB6Ng01-014A21
Chromosome14 (Build37)
Map Location 52,731,709 - 52,857,071
singlet/doubletdoublet
Overlap geneRpgrip1, Supt16h, Chd8
Upstream geneGm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
Downstream geneRab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014A21.bB6Ng01-014A21.g
ACCDH848708DH848709
length1,0121,155
definitionDH848708|Mus musculus domesticus DNA, BAC clone: B6Ng01-014A21, 5' end.DH848709|Mus musculus domesticus DNA, BAC clone: B6Ng01-014A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,731,709 - 52,732,735)(52,855,902 - 52,857,071)
sequence
gaattcctactgcaatttagggagctcctgcagaagacagtccagtccac
agttataatttcatgaaggcttttcctttactcactgtcttctgggctct
cttacagcctgatcattgaggtgatgcagcatctactagaatatatgcca
gaggatctgccagttagagacacagattcgagtcctctgttgaaaggtag
gtaaatccagtgcctagatatggacgtcttcactgattgagagaattcct
tgtctgccatgacagtcttcacagtggtgactgttttctttcagcccttt
tcttaaattttccttttatttaaatattacttaattgtatgtgtatgtgt
gtacatgagtgtgcagatgcgtcacacgcctgcagcgctgtgaagctcag
aatacacatcagatctcctccaacaggagttatcgacggttgtaagccac
cgtgtgggtgctgggaactgaaccgagtcctctgcaaggacagtaagtac
tcttaaccactgagccacctctgagccttcttagatgccttagggcttta
tgtctgtaaggagacaccatgaccactgcgattcttctaaaggagaatgt
ttcgttggggctggcttacagtcagaggtttagtcaaattaatgtcatag
catgaaacattgtggcgtgtaggcagacacggtgctggagaagaagctga
gagttctacatcatgatccacaggcagcagagactatgtaccacactatg
ttcagcttgagcatataagccccccccaagcccacccccactgacacact
tcctcaataagaccacaccttttaatagggccagtccagtctccctgggc
cagcattcaacacacgagtctatgggagccattcctactcaaccctcaca
ttagatattctttctttaaaaaaaaattgggctggtgagatggctcagtg
ggtagagcaccgactgctctgagtaccgactgtcttctaaagtccgaagt
gaaatcccagca
gaattcatcagcaagtgacctggttcctccaccagaggaaacagcttcca
ctgaacttcccaaagaatccacagctccagctccagaatccttaaccttg
catgattataccactcagcccaccagccaggagcagccagcccagcctgt
cttgcagacatcaacaccaacagcaggactcttgcaggtctccaagagcc
aggagatcttgagccaagggaatcctttcatgggtgtctctgccacaggt
gtctcccccagtaatactggaggacaaccatctcagtcagctcctaagat
tgttattcttaaagctccaccaaactcctccgtcacaggcacccatgtgg
cacaaattcaggcccaaggtatcaccagtacagctcagcccctagtggct
gggacagccaacggtggaaaagtcacttttaccaaagtgctgactggtac
accccttcgaccaggtgtatccattgtctctggtaatacagtgttggcca
cgaaggtccctgggaaccaggctgctgttcagcgcattgtccagccaagc
cgaccagtaaaacagctggtcctccagccagtaaagggttcagctcctgc
tgggaatcctggggctgccgggcccccactgaagcctgcagttacactga
cgtctacacctacccaggtgacttgaatgaaacagggaggtgaactgtgc
tttcatagaggacctaggagcagtgagggaggggaaagagagcatggttt
ataagaactgcttaatgggaagcctgcttagatctgtcttgcagggtgtg
gcatgttttgggataaaagtcagctagctcagctgctctcaaatgcaggg
gaatcttcctgccttggtctctaaataatgtagggaaaacaggcactaac
cacatgccttattatcttttgcttttcaccagtgagctttgacagtcact
ccctatttggtaggtgcagtagtaaatgtaatgttgcctctcatctctta
atcaaatgctggcgctgtaactatctggtggctgaatcagtggacagctc
agtctcggaaatgagatataagcaaattcaagtattttggctatagtgtc
attgaaaatgaggaattctgaaaacaatatttgcaatctgagtggtcttt
taatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52731709_52732735
seq2: B6Ng01-014A21.b_28_1039

seq1  GAATTCCTACTGCAATTTAGGGAGCTCCTGCAGAAGACAGTCCAGTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGCAATTTAGGGAGCTCCTGCAGAAGACAGTCCAGTCCAC  50

seq1  AGTTATAATTTCATGAAGGCTTTTCCTTTACTCACTGTCTTCTGGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAATTTCATGAAGGCTTTTCCTTTACTCACTGTCTTCTGGGCTCT  100

seq1  CTTACAGCCTGATCATTGAGGTGATGCAGCATCTACTAGAATATATGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCCTGATCATTGAGGTGATGCAGCATCTACTAGAATATATGCCA  150

seq1  GAGGATCTGCCAGTTAGAGACACAGATTCGAGTCCTCTGTTGAAAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTGCCAGTTAGAGACACAGATTCGAGTCCTCTGTTGAAAGGTAG  200

seq1  GTAAATCCAGTGCCTAGATATGGACGTCTTCACTGATTGAGAGAATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCAGTGCCTAGATATGGACGTCTTCACTGATTGAGAGAATTCCT  250

seq1  TGTCTGCCATGACAGTCTTCACAGTGGTGACTGTTTTCTTTCAGCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCATGACAGTCTTCACAGTGGTGACTGTTTTCTTTCAGCCCTTT  300

seq1  TCTTAAATTTTCCTTTTATTTAAATATTACTTAATTGTATGTGTATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATTTTCCTTTTATTTAAATATTACTTAATTGTATGTGTATGTGT  350

seq1  GTACATGAGTGTGCAGATGCGTCACACGCCTGCAGCGCTGTGAAGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGAGTGTGCAGATGCGTCACACGCCTGCAGCGCTGTGAAGCTCAG  400

seq1  AATACACATCAGATCTCCTCCAACAGGAGTTATCGACGGTTGTAAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACATCAGATCTCCTCCAACAGGAGTTATCGACGGTTGTAAGCCAC  450

seq1  CGTGTGGGTGCTGGGAACTGAACCGAGTCCTCTGCAAGGACAGTAAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGGTGCTGGGAACTGAACCGAGTCCTCTGCAAGGACAGTAAGTAC  500

seq1  TCTTAACCACTGAGCCACCTCTGAGCCTTCTTAGATGCCTTAGGGCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCACTGAGCCACCTCTGAGCCTTCTTAGATGCCTTAGGGCTTTA  550

seq1  TGTCTGTAAGGAGACACCATGACCACTGCGATTCTTCTAAAGGAGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAAGGAGACACCATGACCACTGCGATTCTTCTAAAGGAGAATGT  600

seq1  TTCGTTGGGGCTGGCTTACAGTCAGAGGTTTAGTCAAATTAATGTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGGGGCTGGCTTACAGTCAGAGGTTTAGTCAAATTAATGTCATAG  650

seq1  CATGAAACATTGTGGCGTGTAGGCAGACACGGTGCTGGAGAAGAAGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACATTGTGGCGTGTAGGCAGACACGGTGCTGGAGAAGAAGCTGA  700

seq1  GAGTTCTACATCATGATCCACAGGCAGCAGGAGACTATGTACCACACTAT  750
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGTTCTACATCATGATCCACAGGCAGCA-GAGACTATGTACCACACTAT  749

seq1  GTTCAGCTTGAGCATATAAGCCCCCCCCAAGCCCACCCCCACTGACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTTGAGCATATAAGCCCCCCCCAAGCCCACCCCCACTGACACAC  799

seq1  TTCCTCCAATAAGACCACACCTTTTAATAGGGCCAGTCCAGTCTCCCTGG  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCT-CAATAAGACCACACCTTTTAATAGGGCCAGTCCAGTCTCCCTGG  848

seq1  GCCAAGCATTCAAACACACGAGTCTATGGGAGCCATTCCTACTCAACCCT  900
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCC-AGCATTC-AACACACGAGTCTATGGGAGCCATTCCTACTCAACCCT  896

seq1  CCACATTAGATATTCTTTCTTTAAAAAAAAAAAAATTGGGCTGGTGAGAT  950
       |||||||||||||||||||||    ||||||||||||||||||||||||
seq2  -CACATTAGATATTCTTTCTTT----AAAAAAAAATTGGGCTGGTGAGAT  941

seq1  GGCTCAGTGGGTAAGAGCACCCGACTGCTCTGAGTACCCGACTGCTCTTC  1000
      |||||||||||| |||||| |||||||||||||||| ||||||| |||||
seq2  GGCTCAGTGGGT-AGAGCA-CCGACTGCTCTGAGTA-CCGACTG-TCTTC  987

seq1  CAAAGGTCCCGAGTTCAAATCCCAGCA  1027
       ||||   ||||  | |||||||||||
seq2  TAAAG--TCCGAAGTGAAATCCCAGCA  1012

seq1: chr14_52855902_52857071
seq2: B6Ng01-014A21.g_67_1221 (reverse)

seq1  AATTAAAAGAGCACTTACAGTATTGCAAATATATGTTCTCAGAATATCCT  50
      |||||||||| ||||  ||| ||||||||||| |||| ||||||| ||||
seq2  AATTAAAAGACCACT--CAG-ATTGCAAATAT-TGTTTTCAGAAT-TCCT  45

seq1  CTATTTTCAATGACAACTAATAGCAAAAATTTACTATGAATTTTTGCTTA  100
      | |||||||||||| ||| ||||| ||||  |||| ||||  ||||||| 
seq2  C-ATTTTCAATGAC-ACT-ATAGCCAAAA--TACT-TGAA--TTTGCTT-  86

seq1  ATATCTCTATCTCCCTGAAGACTGAGCTGTCCACTGATTTCAG-CACCAG  149
      ||||||| || |||    ||||||||||||||||||| ||||| ||||||
seq2  ATATCTC-ATTTCC---GAGACTGAGCTGTCCACTGA-TTCAGCCACCAG  131

seq1  ATAGGTACAGCG-CAGCATGTGA-TAAGAGATGAGAGGC-ACATTAACAT  196
      |||| ||||||| |||||| ||| ||||||||||||||| ||||| ||||
seq2  ATAGTTACAGCGCCAGCATTTGATTAAGAGATGAGAGGCAACATT-ACAT  180

seq1  TTACTACTGCACCTACCAATTAAGGAAGTGACTGTCAAAGCTCACTGGTG  246
      ||||||||||||||||||| | ||| ||||||||||||||||||||||||
seq2  TTACTACTGCACCTACCAAAT-AGGGAGTGACTGTCAAAGCTCACTGGTG  229

seq1  AAAAGC-AAAGATAATAAGGCATGTTGGTTAGTGCCTGTTTTCCCTACAT  295
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAGCAAAAGATAATAAGGCATG-TGGTTAGTGCCTGTTTTCCCTACAT  278

seq1  TATTTAGAGACCAAGGCAGGAAGATTCCCCTGCATTTGAGAGCAGCCTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTTAGAGACCAAGGCAGGAAGATTCCCCTGCATTTGAGAGCAG-CTGA  327

seq1  GCTAGCTGAC-TTTATCCC-AAACATGCCACACCCTGCAAGACAGATCTA  393
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  GCTAGCTGACTTTTATCCCAAAACATGCCACACCCTGCAAGACAGATCTA  377

seq1  AGCAGGCTTCCCA-TAAGCAGTTCTTATAAACCATGCTCTCTTTCCCCTC  442
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTCCCATTAAGCAGTTCTTATAAACCATGCTCTCTTTCCCCTC  427

seq1  CCTCACTGCTCCTAGGTCCTCTATGAAAGCACAGTTCACCTCCCTGTTTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGCTCCTAGGTCCTCTATGAAAGCACAGTTCACCTCCCTGTTTC  477

seq1  ATTCAAGTCACCTGGGTAGGTGTAGACGTCAGTGTAACTGCAGGCTTCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCACCTGGGTAGGTGTAGACGTCAGTGTAACTGCAGGCTTCAG  527

seq1  TGGGGGCCCGGCAGCCCCAGGATTCCCAGCAGGAGCTGAACCCTTTACTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCCCGGCAGCCCCAGGATTCCCAGCAGGAGCTGAACCCTTTACTG  577

seq1  GCTGGAGGACCAGCTGTTTTACTGGTCGGCTTGGCTGGACAATGCGCTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGACCAGCTGTTTTACTGGTCGGCTTGGCTGGACAATGCGCTGA  627

seq1  ACAGCAGCCTGGTTCCCAGGGACCTTCGTGGCCAACACTGTATTACCAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCCTGGTTCCCAGGGACCTTCGTGGCCAACACTGTATTACCAGA  677

seq1  GACAATGGATACACCTGGTCGAAGGGGTGTACCAGTCAGCACTTTGGTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGGATACACCTGGTCGAAGGGGTGTACCAGTCAGCACTTTGGTAA  727

seq1  AAGTGACTTTTCCACCGTTGGCTGTCCCAGCCACTAGGGGCTGAGCTGTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTTTCCACCGTTGGCTGTCCCAGCCACTAGGGGCTGAGCTGTA  777

seq1  CTGGTGATACCTTGGGCCTGAATTTGTGCCACATGGGTGCCTGTGACGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATACCTTGGGCCTGAATTTGTGCCACATGGGTGCCTGTGACGGA  827

seq1  GGAGTTTGGTGGAGCTTTAAGAATAACAATCTTAGGAGCTGACTGAGATG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGGTGGAGCTTTAAGAATAACAATCTTAGGAGCTGACTGAGATG  877

seq1  GTTGTCCTCCAGTATTACTGGGGGAGACACCTGTGGCAGAGACACCCATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTCCAGTATTACTGGGGGAGACACCTGTGGCAGAGACACCCATG  927

seq1  AAAGGATTCCCTTGGCTCAAGATCTCCTGGCTCTTGGAGACCTGCAAGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTCCCTTGGCTCAAGATCTCCTGGCTCTTGGAGACCTGCAAGAG  977

seq1  TCCTGCTGTTGGTGTTGATGTCTGCAAGACAGGCTGGGCTGGCTGCTCCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGTTGGTGTTGATGTCTGCAAGACAGGCTGGGCTGGCTGCTCCT  1027

seq1  GGCTGGTGGGCTGAGTGGTATAATCATGCAAGGTTAAGGATTCTGGAGCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGGCTGAGTGGTATAATCATGCAAGGTTAAGGATTCTGGAGCT  1077

seq1  GGAGCTGTGGATTCTTTGGGAAGTTCAGTGGAAGCTGTTTCCTCTGGTGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGGATTCTTTGGGAAGTTCAGTGGAAGCTGTTTCCTCTGGTGG  1127

seq1  AGGAACCAGGTCACTTGCTGATGAATTC  1170
      ||||||||||||||||||||||||||||
seq2  AGGAACCAGGTCACTTGCTGATGAATTC  1155