BAC Information

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BAC

Clone NameB6Ng01-014F23
Chromosome14 (Build37)
Map Location 119,508,304 - 119,616,497
singlet/doubletdoublet
Overlap geneHs6st3
Upstream geneTgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F23.bB6Ng01-014F23.g
ACCDH848940DH848941
length271876
definitionDH848940|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F23, 5' end.DH848941|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,616,227 - 119,616,497)(119,508,304 - 119,509,169)
sequence
agatcccttaaatgcatgcaacacttgcacacattggcaagtgcacacaa
acaaacacttgggcccagtggcaggtgcacacaatcccaaacattcggga
agctggatgctcactagtattcactatccaggtcatcttgcaaagctggt
gaaccctagtccaggagactctgtcttaataattaaaaatatatatatag
agagagcaataaagatgccagacatcaagaggaagggagggagggagaga
gagagagagagagagagagag
gaattctgtaagatgaacactgccaagtctgaagtgctccccagagtctt
agctcttctcttgttgaccagggttaataggccctgagagtgatctccaa
ttagcccatggttaattgccgagagggaagcatcatttgtggcttcgtga
aggttaaagaagacatcagcattttgtcaccatcacagtggcatcatgcc
agacttagaagccacttcagcctgtatgacatcagtaattattcatctaa
gtcttaaatgtgaggcaattcctttctataagaaaggaatcttaaattta
ttctttaaaagtatttcttctcaactgtgacaagagaaaaaaaaaagtct
attcacctctgacaaagaggccactagccaaagaaaaatattctcttcaa
cttagcttggtaattgatcagagccaaagtactaaataaaacgattttta
aaaaagatgttcaagaattaaaccaacaaaataaactgcgtgaactttga
atagatttctagttttttgttttttgttttttttcccagagaagctgtta
ctacgttggaggatgagctggggtgaaaattagattatgacctggagctc
tgactgtagaattgattactataaggtgttataaaacagcattttttagg
agatgaataaaactttgtaaagtactacttgtcaaatgattttagcaaaa
gcatgtattctcaggatgtttaaaatgctgaaaattgcaaagcctgctca
ctaggtgggggattcttgcctgggtcctgaatgcttactgcttgttggct
ggagaggatcagactcctgctgagaaccttcttgttgtttttcgaaacca
ttggtattccttagctatattgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119616227_119616497
seq2: B6Ng01-014F23.b_51_321 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTTCCTCTTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTTCCTCTTGATGT  50

seq1  CTGGCATCTTTATTGCTCTCTCTATATATATATTTTTAATTATTAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCTTTATTGCTCTCTCTATATATATATTTTTAATTATTAAGACA  100

seq1  GAGTCTCCTGGACTAGGGTTCACCAGCTTTGCAAGATGACCTGGATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCCTGGACTAGGGTTCACCAGCTTTGCAAGATGACCTGGATAGTG  150

seq1  AATACTAGTGAGCATCCAGCTTCCCGAATGTTTGGGATTGTGTGCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGTGAGCATCCAGCTTCCCGAATGTTTGGGATTGTGTGCACCTG  200

seq1  CCACTGGGCCCAAGTGTTTGTTTGTGTGCACTTGCCAATGTGTGCAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGCCCAAGTGTTTGTTTGTGTGCACTTGCCAATGTGTGCAAGTG  250

seq1  TTGCATGCATTTAAGGGATCT  271
      |||||||||||||||||||||
seq2  TTGCATGCATTTAAGGGATCT  271

seq1: chr14_119508304_119509169
seq2: B6Ng01-014F23.g_69_944

seq1  GAATTCTGTAAGATGAACACTGCCAAGTCTGAAGTGCTCCCCAGAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGATGAACACTGCCAAGTCTGAAGTGCTCCCCAGAGTCTT  50

seq1  AGCTCTTCTCTTGTTGACCAGGGTTAATAGGCCCTGAGAGTGATCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCTCTTGTTGACCAGGGTTAATAGGCCCTGAGAGTGATCTCCAA  100

seq1  TTAGCCCATGGTTAATTGCCGAGAGGGAAGCATCATTTGTGGCTTCGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCATGGTTAATTGCCGAGAGGGAAGCATCATTTGTGGCTTCGTGA  150

seq1  AGGTTAAAGAAGACATCAGCATTTTGTCACCATCACAGTGGCATCATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAGAAGACATCAGCATTTTGTCACCATCACAGTGGCATCATGCC  200

seq1  AGACTTAGAAGCCACTTCAGCCTGTATGACATCAGTAATTATTCATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGAAGCCACTTCAGCCTGTATGACATCAGTAATTATTCATCTAA  250

seq1  GTCTTAAATGTGAGGCAATTCCTTTCTATAAGAAAGGAATCTTAAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAATGTGAGGCAATTCCTTTCTATAAGAAAGGAATCTTAAATTTA  300

seq1  TTCTTTAAAAGTATTTCTTCTCAACTGTGACAAGAGAAAAAAAAAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAAGTATTTCTTCTCAACTGTGACAAGAGAAAAAAAAAAGTCT  350

seq1  ATTCACCTCTGACAAAGAGGCCACTAGCCAAAGAAAAATATTCTCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCTGACAAAGAGGCCACTAGCCAAAGAAAAATATTCTCTTCAA  400

seq1  CTTAGCTTGGTAATTGATCAGAGCCAAAGTACTAAATAAAACGATTTTT-  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTAGCTTGGTAATTGATCAGAGCCAAAGTACTAAATAAAACGATTTTTA  450

seq1  AAAAAGATGTTCAAGAATTAAACCAACAAAATAAACTGCGTGAACTTTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATGTTCAAGAATTAAACCAACAAAATAAACTGCGTGAACTTTGA  500

seq1  ATAGATTTCTAGTTTTTTGTTTTTTGTTTTTTTT-CCAGAGAAGCTGTTA  548
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAGATTTCTAGTTTTTTGTTTTTTGTTTTTTTTCCCAGAGAAGCTGTTA  550

seq1  CGACGTTGGAGGATGAGCT-GGGTGAAAATTAGATTATGACCTGGAGCTC  597
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTACGTTGGAGGATGAGCTGGGGTGAAAATTAGATTATGACCTGGAGCTC  600

seq1  TGACTGTAGAATTGATTACTATAAGGTGTTATAAAACAGCA-TTTTTAGG  646
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGACTGTAGAATTGATTACTATAAGGTGTTATAAAACAGCATTTTTTAGG  650

seq1  AGATGAATAAAACTTTGTAAAGTACTAC-TGTCAAATGA-TTTAGCAAAA  694
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  AGATGAATAAAACTTTGTAAAGTACTACTTGTCAAATGATTTTAGCAAAA  700

seq1  GCATGTATTCTCAGGATGTTAAAATTGCTG-AAATTGCAAAGCCTGCTCA  743
      |||||||||||||||||||| ||| ||||| |||||||||||||||||||
seq2  GCATGTATTCTCAGGATGTTTAAAATGCTGAAAATTGCAAAGCCTGCTCA  750

seq1  CTAGGT-GGGGATCCATGCCT-GGTCCTGAAGGCTTACTGCTTG-TGGCT  790
      |||||| |||||| | ||||| ||||||||| |||||||||||| |||||
seq2  CTAGGTGGGGGATTCTTGCCTGGGTCCTGAATGCTTACTGCTTGTTGGCT  800

seq1  GGAGAGGACACAGACCCCAGCTGAGAACCTTC-TGTTGTTTTCCGAAACC  839
      ||||||||  ||||| || ||||||||||||| ||||||||| |||||||
seq2  GGAGAGGA-TCAGACTCCTGCTGAGAACCTTCTTGTTGTTTTTCGAAACC  849

seq1  AATGTAATTCC-TAGCTATATTGCAACT  866
      | ||  ||||| ||||||||||| ||||
seq2  ATTGGTATTCCTTAGCTATATTG-AACT  876