BAC Information

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BAC

Clone NameB6Ng01-014M03
Chromosome14 (Build37)
Map Location 94,971,410 - 94,971,924
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014M03.bB6Ng01-014M03.g
ACCDH849211DH849212
length1,202939
definitionDH849211|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M03, 5' end.DH849212|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctgctgtaacagtctttggatgtgtggtctaattccttctttg
gcttctctatttatggggtactgccttaccgatataggggtggaggcagc
cttcaggtcgaccactactggaggcacccttttagccagtcccatacctg
cttgttctgcccagacttcaggaaaagccatcagccattcatctgagggc
aactttttgggtccctgatcgtggagacggtattcctcctctgtacccaa
aaccaaacatactactgaatcctttccccaactgacctcaggtccctgag
gagtaaattgaacctgtgcttttaatttagtcaacaaatcccttcccagc
agaggtgcaggacatttggtaattacaagaaaggaatgagttacttgggt
ttttttctatttctagagtccgtttcgttgtccaggggtaaaatttgttg
ccagtggctcccattaccatggtcctttttgatcccaattgtcccaacag
tttggtcaagactgagtgttctactcctgtatctaccaggaagtcgatgg
gggtcccttccacagagagtgttaccctaggctcggggaggggagccgag
ccctgacttccctagtcttcctctagggtcaacactctaggtaccctttg
ctcttcctggggcactttctggcccaatgtcccttttccttgcaataggc
acgctgatccttttcaagctggagtctctgtccttccggaggtcttctgg
ccctgtcgcccaggtaccctgactgccttttctctggctttccttcacct
actactgcagccaaaatcttagtcaaattcctttcctggcggcgatcacg
cttattttctctttcctctgcctctttctttctctttcctgtttctcctc
ctctgtctcccttttgtggtatactttctcacttcttcacagatcctgta
aagtgtatcttggagcccctctagcctctgcagtttctttttaatgtcag
agcagactgaccgatgaaagcatggctatagcagctggtgcttcctttga
agtggggtcaaaaggttacttctattaagctccctcacgtgttcttgaaa
acagacaggctccatctggacctgaatacctcttacttaccaatatgtag
aacctgggtccttcgatcgcactagaccgcggtgacacgagagattcctc
ct
gaattctaaacaggcatttgttctcagcctaaaagagctgcttcaggcaa
gaggagcagggtttaaaaaacagatgttagaaaacttcttagctcaagta
gatttgtggtgtccatagtttccagaagtagggatggtaaaagctctttc
agagctctcctagggacaggaggaaggagggagagatgtcctgcttcttc
tctggctcctactggagatatccttagttctggctctggatctcttaagt
agggtatttgggtccctttgggacatcaagttctcttccctctctgtcta
ttgtctgtccttggtgcgctaatctgtccatgtctgtccatttatgcctg
gttttgtcttttgtttgaatggttggtgttctgtgcttcatgttcaaaag
aaaaaatggataaacttatctgctggctgtccctcgtaccccccccccct
ccttgctttagtttaacttgtttaaaaggcactcaatttgcactgcagaa
actgagaagttaccctgcaaaaaaactctgtaattgggttcaaaaagtag
caaggcactcctctcttgaaattacagctagaaaaagtaagaaaattttg
tttagtctaaatatataagatgtgtgtggccacttcatttttgtttctga
ctggttttaaaagtataaatatgttatacatgtcttggttatagagtatt
ggcttataagttatttggtatgattaaaattttgtaactttggtaataga
aagttggcttaaaactggtaactcagggttggagtcattctaaataacac
gtggcatgagccaacccaggaaatatgtctctaaagatacttctaattgg
gatatatttatgtatttcttatcctagaaactagacttatgaaggataga
tttaaaacaatgtctctttaatgaggtattaaaagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94971410_94971924
seq2: B6Ng01-014M03.g_130_426

seq1  AAAATAACAGATGTTAGAAAAATTCTTAGCTCAAGTACATTTATGTTGTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTAATTCTGAGAAGTAGGAATGGTAAATATATAAATGAAAAAATTAGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTGAGGAATGTTAGAAAAGCAAGGGACTGGGGAGCAACTATCAGTAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTAACACTGTGCCTCTTCTCCCTTCTCTGGCAGAGTTCCCAGAAGAAGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATAAAGAGTTAGTCTTTGAACACAAGAGAGAGAAAGAGA-GAGAGAATA  249
                                     | ||| ||| |  |||| |
seq2  ------------------------------AAAAAACAGATGTTAGAAAA  20

seq1  GTTTTCAG-AAAAGCAGTTATTCCCTGTTCGGGACATTTTAGCAAAAGAG  298
       || | ||   ||| ||  |||   |||   |  |||  |  | | | ||
seq2  CTTCTTAGCTCAAGTAG--ATT---TGTGGTGTCCATAGTTTCCAGA-AG  64

seq1  AAGGAAAATGGAAATAATCTATTTCAGAGCTCTCTTAGGGACAGGAGGAA  348
       |||   |||| || || || ||||||||||||| |||||||||||||||
seq2  TAGG--GATGGTAA-AAGCTCTTTCAGAGCTCTCCTAGGGACAGGAGGAA  111

seq1  --ATCGGGAGATGTCCTGCTTCTTCTCTGGCTCCTA-TGGAGATATTCTT  395
        |  | ||||||||||||||||||||||||||||| ||||||||| |||
seq2  GGAGGGAGAGATGTCCTGCTTCTTCTCTGGCTCCTACTGGAGATATCCTT  161

seq1  AGTTCTGG---------------TTAGGATATCTGGGTC--------TCC  422
      ||||||||                |||| ||| ||||||         | 
seq2  AGTTCTGGCTCTGGATCTCTTAAGTAGGGTATTTGGGTCCCTTTGGGACA  211

seq1  TCAAGTTCTATTCCCTCTCTGTCTATTGTCTGTTCTTGGTGCACCAATTT  472
      ||||||||| ||||||||||||||||||||||| |||||||| | ||| |
seq2  TCAAGTTCTCTTCCCTCTCTGTCTATTGTCTGTCCTTGGTGCGCTAATCT  261

seq1  GTCCACATGTCTGTCAATTTATGTTTCTTTTGTTTTGTTCTTT  515
      |||  |||||||||| |||||||      | |||||| |||||
seq2  GTC--CATGTCTGTCCATTTATG----CCTGGTTTTG-TCTTT  297