BAC Information

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BAC

Clone NameB6Ng01-015F11
Chromosome14 (Build37)
Map Location 109,266,840 - 109,409,961
singlet/doubletdoublet
Overlap geneSlitrk1
Upstream geneLOC668757, EG668761
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015F11.bB6Ng01-015F11.g
ACCDH849630DH849631
length1,1021,045
definitionDH849630|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F11, 5' end.DH849631|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,266,840 - 109,267,952)(109,408,914 - 109,409,961)
sequence
gaattctttggttttctgacttttctttttgtatgtatgcacattgcagc
tgtatcttttgtgagcaaattcccttacctcatttcagctacatatcttt
gcatcttagaatactgagtgttttgatgtacaagaatataagaacaaagg
tgttttgtaaaagggcccagaaagtagtgaagaagacaaacaattagcaa
atttctgcttatttatgcctggagaagtattctctctttatttttcatct
cttctacttatgaatgagtaccttcttaatctgaaatggtatgctaagag
aggaaggcttcagccaggccaaaatgagcagtgtaatttgatctttccaa
tgctaagtttgagtcataggtctgccagtgtaccagcagacaagggaaca
ttttaaaataaatgtcaggaacagttatgagttgtctgttggccacaagc
cagatcagggtggaaaggtggaaaacttgtgaatatcaaagcacatgatt
ttcaggggtggagcatctggtactcagaaaactgaaacaataaaagccaa
gggttaccttgtataacatttcttggaaacatttcaaattaatactagat
tttactagtaaacttagttatatctccttgcctcctcccttcccctgtcc
cccttccctttgtctacttggaatgaaagcaaaatgaaactgttagcatg
caattcttgttttcattgtctgtttgcctctgcttctgatcatgtaaatg
gccattttaaaatctcttactcataaatcttctcaactttatggccagtg
gggttccatcagaacccaaaatgaactaggctgttttcaagattaatgtt
gtcccctacaaactgacagcaacgtcccattgctaaggacacacctacac
gataattgattatggagaagcccagctgctgcctacatgttaacaccttc
acactagttaccaaaaagaaaagtaattgccaagccaatctttcatctac
aatggtgtcctacttgaaatgccatgtgtgctgtagacagggagcctgcg
agacataagccaataagtgtcagatgaactgtagagtctgaagcctgtgg
aa
gaattcagtctggcagttcctcagaaaattggacatagtactaccagaag
atccagcaatacctctcctgggcatatatccagaagaagttcctactggt
aataaggactcaagctctatgttctggactagttaagggcagtatgagct
gtgcaaagtgagtgttgagaaattccctcaggtcctatgcaagaataata
gtgcttttaaccactgacctagcaccctcgatttatgtcattacaaataa
gagtttcttaaagaaacttatatcagttttagaaataaaaaaagaatatc
tgcatgtgggaaaatatctaaatatggtcttacatgccctttttctttta
ctgctaaacggattctctatccccactactttttcaaagctgggaaacat
ggaaaacatttcatgatttttaatcaatatcttacaacaaaatttttcaa
aactacagccctccggctaacagcatcatccaggagtttattaaaagcga
ggattctcaggccaccttatatttggatgagagagaaactcttgagctaa
acagcaacatctttttcacatgctttttaaataaaaattacgtttgaaaa
atcggagacgctaaatttcagctaaaatgcaattttatcttaatttctcc
atattgcttttatgttttccacagtatggtctcttccaggcttagccatg
tgtatgtattttgccaaggtataaaagttaacttttaacattcattcttt
gacatttcaaacatgtgactatcccttggctgatttaattaacattcttc
aaattagcctgtgctaactaatttgggaggaaatgccaggtgactaatct
gtgttgcctcagatgatgtctcttcctattgctttctgctccctgcagga
tcagtctgtctgtaaagttgtctggaaggtccttacaacaggtttcttag
taaatgctaatctccacacctccctttgtgtttcactttcccttctctca
accctgtgaaatcccctaactgattttacacctacatttaagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109266840_109267952
seq2: B6Ng01-015F11.b_47_1148

seq1  GAATTCTTTGGTTTTCTGACTTTTCTTTTTGTATGTATGCACATTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTTTCTGACTTTTCTTTTTGTATGTATGCACATTGCAGC  50

seq1  TGTATCTTTTGTGAGCAAATTCCCTTACCTCATTTCAGCTACATATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTTGTGAGCAAATTCCCTTACCTCATTTCAGCTACATATCTTT  100

seq1  GCATCTTAGAATACTGAGTGTTTTGATGTACAAGAATATAAGAACAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTAGAATACTGAGTGTTTTGATGTACAAGAATATAAGAACAAAGG  150

seq1  TGTTTTGTAAAAGGGCCCAGAAAGTAGTGAAGAAGACAAACAATTAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAAAAGGGCCCAGAAAGTAGTGAAGAAGACAAACAATTAGCAA  200

seq1  ATTTCTGCTTATTTATGCCTGGAGAAGTATTCTCTCTTTATTTTTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTTATTTATGCCTGGAGAAGTATTCTCTCTTTATTTTTCATCT  250

seq1  CTTCTACTTATGAATGAGTACCTTCTTAATCTGAAATGGTATGCTAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTTATGAATGAGTACCTTCTTAATCTGAAATGGTATGCTAAGAG  300

seq1  AGGAAGGCTTCAGCCAGGCCAAAATGAGCAGTGTAATTTGATCTTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCTTCAGCCAGGCCAAAATGAGCAGTGTAATTTGATCTTTCCAA  350

seq1  TGCTAAGTTTGAGTCATAGGTCTGCCAGTGTACCAGCAGACAAGGGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTTTGAGTCATAGGTCTGCCAGTGTACCAGCAGACAAGGGAACA  400

seq1  TTTTAAAATAAATGTCAGGAACAGTTATGAGTTGTCTGTTGGCCACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATAAATGTCAGGAACAGTTATGAGTTGTCTGTTGGCCACAAGC  450

seq1  CAGATCAGGGTGGAAAGGTGGAAAACTTGTGAATATCAAAGCACATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGGGTGGAAAGGTGGAAAACTTGTGAATATCAAAGCACATGATT  500

seq1  TTCAGGGGTGGAGCATCTGGTACTCAGAAAACTGAAACAATAAAAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGTGGAGCATCTGGTACTCAGAAAACTGAAACAATAAAAGCCAA  550

seq1  GGGTTACCTTGTATAACATTTCTTGGAAACATTTCAAATTAATACTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACCTTGTATAACATTTCTTGGAAACATTTCAAATTAATACTAGAT  600

seq1  TTTACTAGTAAACTTAGTTATATCTCCTTGCCTCCTCCCTTCCCCTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGTAAACTTAGTTATATCTCCTTGCCTCCTCCCTTCCCCTGTCC  650

seq1  CCCTTCCCTTTGTCTACTTGGAATGAAAGCAAAATGAAACTGTTAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCTTTGTCTACTTGGAATGAAAGCAAAATGAAACTGTTAGCATG  700

seq1  CAATTCTTGTTTTCATTGTCTGTTTGCCTCTGCTTCTGATCATGTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGTTTTCATTGTCTGTTTGCCTCTGCTTCTGATCATGTAAATG  750

seq1  GCCATTTTAAAATCTCTTACTCATAAATCTTCTCAACTTTATGGCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTAAAATCTCTTACTCATAAATCTTCTCAACTTTATGGCCAGTG  800

seq1  GGGTTCCATCAGAACCCAAAATGAACTAGGCTGTTTTCAAGATTAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCATCAGAACCCAAAATGAACTAGGCTGTTTTCAAGATTAATGTT  850

seq1  GTCCCCTACAAACTGACAGCAACGTCCCATTGCTAAGGACAACACCTACA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCCCTACAAACTGACAGCAACGTCCCATTGCTAAGGAC-ACACCTACA  899

seq1  CGATAATTGATTATGGAGAAGCCCAGCTGCTGCCTACATGTTAACACCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAATTGATTATGGAGAAGCCCAGCTGCTGCCTACATGTTAACACCTT  949

seq1  CACACTAGTTACCAAAAAAGAAAAGTAAATGCCAAGCCAAATCTTTCATC  1000
      ||||||||||||| |||||||||||||| ||||||||| |||||||||||
seq2  CACACTAGTTACC-AAAAAGAAAAGTAATTGCCAAGCC-AATCTTTCATC  997

seq1  TACAATGGTGTCCTAACTTGAAATGCCATGTTGTGCTTGTAGACA-GGAG  1049
      |||||||||||||| ||||||||||||||| ||||| |||||||| ||||
seq2  TACAATGGTGTCCT-ACTTGAAATGCCATG-TGTGC-TGTAGACAGGGAG  1044

seq1  CCTAGCGAGACATAGGCCAATAAGTGTACAGATG-ACTGTAGTGAGGTCT  1098
      ||| |||||||||| |||||||||||| |||||| |||||||    ||||
seq2  CCT-GCGAGACATAAGCCAATAAGTGT-CAGATGAACTGTAG---AGTCT  1089

seq1  GGGACGCCTGTGGAA  1113
        || ||||||||||
seq2  --GAAGCCTGTGGAA  1102

seq1: chr14_109408914_109409961
seq2: B6Ng01-015F11.g_69_1113 (reverse)

seq1  GTAC-TAAATGTAGTGTTAAAATCAGTTAGGGGATTTCACAGTGTTGAGA  49
      |||| |||||||||   ||||||||||||||||||||||||| |||||||
seq2  GTACTTAAATGTAGGTGTAAAATCAGTTAGGGGATTTCACAGGGTTGAGA  50

seq1  GGAAGGGAAAGTGAAACACAAAGGGA-GTGTGGAGATTAGCATTTACTAA  98
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -GAAGGGAAAGTGAAACACAAAGGGAGGTGTGGAGATTAGCATTTACTAA  99

seq1  GAAACCTTGTTGTAAGGACCTTCCAAGACAACTTTACAGAACAGACTGAT  148
      |||||| ||||||||||||||||| |||||||||||||| ||||||||||
seq2  GAAACC-TGTTGTAAGGACCTTCC-AGACAACTTTACAG-ACAGACTGAT  146

seq1  CCTGCAGGGAGCAGAAAAGCAATAGGAAGAGACATCATCTGAGGCAACAC  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGGAGCAG-AAAGCAATAGGAAGAGACATCATCTGAGGCAACAC  195

seq1  AGATTAGTCACCTGGCATTTCCTCCCAAATTAGTTAGCACAGGCTAATTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTCACCTGGCATTTCCTCCCAAATTAGTTAGCACAGGCTAATTT  245

seq1  GAAGAATGTTAATTAAATCAGCCAAGGGATAGTCACATGTTTGAAATGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTTAATTAAATCAGCCAAGGGATAGTCACATGTTTGAAATGTC  295

seq1  AAAGAATGAATGTTAAAAGTTAACTTTTATACCTTGGCAAAATACATACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAATGTTAAAAGTTAACTTTTATACCTTGGCAAAATACATACA  345

seq1  CATGGCTAAGCCTGGAAGAGACCATACTGTGGAAAACATAAAAGCAATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTAAGCCTGGAAGAGACCATACTGTGGAAAACATAAAAGCAATAT  395

seq1  GGAGAAATTAAGATAAAATTGCATTTTAGCTGAAATTTAGCGTCTCCGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATTAAGATAAAATTGCATTTTAGCTGAAATTTAGCGTCTCCGAT  445

seq1  TTTTCAAACGTAATTTTTATTTAAAAAGCATGTGAAAAAGATGTTGCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACGTAATTTTTATTTAAAAAGCATGTGAAAAAGATGTTGCTGT  495

seq1  TTAGCTCAAGAGTTTCTCTCTCATCCAAATATAAGGTGGCCTGAGAATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCAAGAGTTTCTCTCTCATCCAAATATAAGGTGGCCTGAGAATCC  545

seq1  TCGCTTTTAATAAACTCCTGGATGATGCTGTTAGCCGGAGGGCTGTAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTTTAATAAACTCCTGGATGATGCTGTTAGCCGGAGGGCTGTAGTT  595

seq1  TTGAAAAATTTTGTTGTAAGATATTGATTAAAAATCATGAAATGTTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATTTTGTTGTAAGATATTGATTAAAAATCATGAAATGTTTTCC  645

seq1  ATGTTTCCCAGCTTTGAAAAAGTAGTGGGGATAGAGAATCCGTTTAGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCCAGCTTTGAAAAAGTAGTGGGGATAGAGAATCCGTTTAGCAG  695

seq1  TAAAAGAAAAAGGGCATGTAAGACCATATTTAGATATTTTCCCACATGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAAGGGCATGTAAGACCATATTTAGATATTTTCCCACATGCA  745

seq1  GATATTCTTTTTTTATTTCTAAAACTGATATAAGTTTCTTTAAGAAACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTTTTTTTATTTCTAAAACTGATATAAGTTTCTTTAAGAAACTC  795

seq1  TTATTTGTAATGACATAAATCGAGGGTGCTAGGTCAGTGGTTAAAAGCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTAATGACATAAATCGAGGGTGCTAGGTCAGTGGTTAAAAGCAC  845

seq1  TATTATTCTTGCATAGGACCTGAGGGAATTTCTCAACACTCACTTTGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTTGCATAGGACCTGAGGGAATTTCTCAACACTCACTTTGCAC  895

seq1  AGCTCATACTGCCCTTAACTAGTCCAGAACATAGAGCTTGAGTCCTTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATACTGCCCTTAACTAGTCCAGAACATAGAGCTTGAGTCCTTATT  945

seq1  ACCAGTAGGAACTTCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAGGAACTTCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGAT  995

seq1  CTTCTGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGAATTC  1045