BAC Information

Click to search

BAC

Clone NameB6Ng01-015G14
Chromosome14 (Build37)
Map Location 30,467,123 - 30,561,261
singlet/doubletdoublet
Overlap geneCacna2d3, EG665431
Upstream geneLrtm1, Ppia-ps15
Downstream geneSelk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015G14.bB6Ng01-015G14.g
ACCDH849676DH849677
length1,092693
definitionDH849676|Mus musculus domesticus DNA, BAC clone: B6Ng01-015G14, 5' end.DH849677|Mus musculus domesticus DNA, BAC clone: B6Ng01-015G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,467,123 - 30,468,211)(30,560,566 - 30,561,261)
sequence
gaattcctagtgtcaatgtgagcagaacaagaatgaacaccacaagctac
tgagtacttccccatattcaccaccatgaagatgcatgattgtcaaaaca
tatcatttgtgttaaaaaagtaaagtctttcccctacacccccaagtagt
ctttaaaggaactttctggaagtgggaggaaaaagggccacccacacttg
aattgcttgatgcttctgactgacagaattttttgaaagaaaagaaaaat
cactgtgccccaggttgatcatcattatcatgtcacagatatgctataga
aaactttcagagaggatatgaatgttctagaagttgtcaggcaaactcca
aagggatccagaactcctgtaatgtcacccctagtcaatgggtccttgaa
ctctccactcccaagtctaggtccagtctgtgtgtcctcagtatctaaca
atatccaactctcagagaactactctattcgtgacagggctccaactaat
acccctgccttctaatcttacaacaatgagcatcattaggaggcaaaggt
ttggaaaagttaacataacttgccccaacttcaatggctgggacatctaa
gtccagctctgtccactcccaaactgaatgatcccaggccaggatggtca
tacaagctgcatctgccacttgccttgcccgacactaggcaagggcatga
gcaaaagggtgctctgcctgctgggtcagttcaatgtgaaaatacaaaga
acagtttttaccttcccaggcatcccctggatagcaggctacaaggtcca
ctgaacagtttgggatggctccttgtggttataaaagaaacactgagttg
ttatgatgatgattaatgatgatgatgacattgggggaaaaacatgaaat
cattaagtatagcttaaaggcaacatgctcattttaaaatcattaattta
atgccatcggcccattcaaggaagatactggaggttgcatggttggtcct
gaaaccgatcatgtttaaaacatcaaaagtcacagtgatggaggttttag
gaacgaaaaaagttaccatttgtggataataaaagagacggc
gaattctttttctccattatctacttttaggacccatcacagtccccatt
tttaatgactattatagaagaaaactccaaatataactgaggtagattta
aatgagctttaaaaatattccatgctatcggaatatgaaattatgcaaca
tttataagtaaaaagctcacgaagctctcttaattctcccatgttctgtg
ggtgggaccaatgaataataaaaccgttgcctgttgaaggaataaaattt
tgactcataaattgagctccatgaaaattatttaaagtactttgtaagtg
taataggttccccagaaatagttctcatttgcattgcagcatctcctata
cacaaagagcaagagatatatgttcatcctagaaaacagagagtctctta
ggatggctcccacagcatcatttgcattattgatagtttggtatttttag
ttcatacttttctttgaacaaaagaagatatctattccctgccccatctc
ctttttctcttttttcaaggccccacagacatgaaaatgaaagaagataa
gtggccaccccagagtagaagccacttacatgaaacagttacctcagagc
gtgaagctcttggtatttgataattcattatatgggtaaatttaacttta
taattctccgtttttatttattaaagctttaggatggtgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30467123_30468211
seq2: B6Ng01-015G14.b_44_1135

seq1  GAATTCCTAGTGTCAATGTGAGCAGAAGAAGAATGAACACCACAAGCTAC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCTAGTGTCAATGTGAGCAGAACAAGAATGAACACCACAAGCTAC  50

seq1  TGAGTACTTCCCCATATTCACCACCATGAAGATGCATGATTGTCAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTTCCCCATATTCACCACCATGAAGATGCATGATTGTCAAAACA  100

seq1  TATCATTTGTGTTAAAAAAGTAAAGTCTTTCCCCTACACCCCCAAGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTGTGTTAAAAAAGTAAAGTCTTTCCCCTACACCCCCAAGTAGT  150

seq1  CTTTAAAGGAACTTTCTGGAAGTGGGAGGAAAAAGGGCCACCCACACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGAACTTTCTGGAAGTGGGAGGAAAAAGGGCCACCCACACTTG  200

seq1  AATTGCTTGATGCTTCTGACTGACAGAATTTTTTGAAAGAAAAGAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTGATGCTTCTGACTGACAGAATTTTTTGAAAGAAAAGAAAAAT  250

seq1  CACTGTGCCCCAGGTTGATCATCATTATCATGTCACAGATATGCTATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCCCCAGGTTGATCATCATTATCATGTCACAGATATGCTATAGA  300

seq1  AAACTTTCAGAGAGGATATGAATGTTCTAGAAGTTGTCAGGCAAACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCAGAGAGGATATGAATGTTCTAGAAGTTGTCAGGCAAACTCCA  350

seq1  AAGGGATCCAGAACTCCTGTAATGTCACCCCTAGTCAATGGGTCCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCCAGAACTCCTGTAATGTCACCCCTAGTCAATGGGTCCTTGAA  400

seq1  CTCTCCACTCCCAAGTCTAGGTCCAGTCTGTGTGTCCTCAGTATCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACTCCCAAGTCTAGGTCCAGTCTGTGTGTCCTCAGTATCTAACA  450

seq1  ATATCCAACTCTCAGAGAACTACTCTATTCGTGACAGGGCTCCAACTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACTCTCAGAGAACTACTCTATTCGTGACAGGGCTCCAACTAAT  500

seq1  ACCCCTGCCTTCTAATCTTACAACAATGAGCATCATTAGGAGGCAAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCCTTCTAATCTTACAACAATGAGCATCATTAGGAGGCAAAGGT  550

seq1  TTGGAAAAGTTAACATAACTTGCCCCAACTTCAATGGCTGGGACATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGTTAACATAACTTGCCCCAACTTCAATGGCTGGGACATCTAA  600

seq1  GTCCAGCTCTGTCCACTCCCAAACTGAATGATCCCAGGCCAGGATGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTCTGTCCACTCCCAAACTGAATGATCCCAGGCCAGGATGGTCA  650

seq1  TACAAGCTGCATCTGCCACTTGCCTTGCCCGACACTAGGCAAGGGCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTGCATCTGCCACTTGCCTTGCCCGACACTAGGCAAGGGCATGA  700

seq1  GCAAAAGGGTGCTCTGCCTGCTGGGTCAGTTCAATGTGAAAATACAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGGTGCTCTGCCTGCTGGGTCAGTTCAATGTGAAAATACAAAGA  750

seq1  ACAGTTTTTACCTTCCCAGGCATCCCCTGGATAGCAGGCTACAAGGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTACCTTCCCAGGCATCCCCTGGATAGCAGGCTACAAGGTCCA  800

seq1  CTGAACAGTTT-GGATGGCTCCTTGTGGTTATAAAAGGAAACACTGAG-T  848
      ||||||||||| |||||||||||||||||||||||| ||||||||||| |
seq2  CTGAACAGTTTGGGATGGCTCCTTGTGGTTATAAAA-GAAACACTGAGTT  849

seq1  GTTATGATGATGA-TAATGATGATGATGACATTGGGGGAAAAACATGAAA  897
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTATGATGATGATTAATGATGATGATGACATTGGGGGAAAAACATGAAA  899

seq1  TCATTAAGTATAGCTAAAAGGCAAACAATGCTCATTTTAAAATCATTAAT  947
      ||||||||||||||| ||||||||   |||||||||||||||||||||||
seq2  TCATTAAGTATAGCTTAAAGGCAA--CATGCTCATTTTAAAATCATTAAT  947

seq1  TTAATGCCATC-GCCCATCATAGGAAGATACTGAAGGTTGCAT-GTGTGT  995
      ||||||||||| ||||||   |||||||||||| ||||||||| ||  ||
seq2  TTAATGCCATCGGCCCATTCAAGGAAGATACTGGAGGTTGCATGGTTGGT  997

seq1  CCTGGAACCGATCATGTTAAAAACATCAAAGGTCACAGTGATGAGAGGTT  1045
      |||| ||||||||||||| ||||||||||| |||||||||||| ||||||
seq2  CCTGAAACCGATCATGTTTAAAACATCAAAAGTCACAGTGATG-GAGGTT  1046

seq1  TTAGGAACAGAAAAAAGTTA-CATTTGTGTAT-ATAAAAGA-ACGGC  1089
      |||||||| ||||||||||| |||||||| || |||||||| |||||
seq2  TTAGGAAC-GAAAAAAGTTACCATTTGTGGATAATAAAAGAGACGGC  1092

seq1: chr14_30560566_30561261
seq2: B6Ng01-015G14.g_70_762 (reverse)

seq1  CATACA----CATAAAGCTTTAATAAATAAAAAATGAAGAATTATTAAAA  46
      ||||||    | |||||||||||||||| ||||| | ||||||||  |||
seq2  CATACACCATCCTAAAGCTTTAATAAAT-AAAAACGGAGAATTAT--AAA  47

seq1  GTTTAATTTTACCATATAATGAATTATCAAATACATAGAGCTTTAC-CTC  95
      ||| |||||  |||||||||||||||||||||||  ||||||| || |||
seq2  GTTAAATTTACCCATATAATGAATTATCAAATACCAAGAGCTTCACGCTC  97

seq1  TGGGGTAAACTGTTTCATTGTAAGTGGCTTCTACTCTTGTGTGTGGCCAC  145
      || ||| |||||||||| |||||||||||||||||||   | ||||||||
seq2  TGAGGT-AACTGTTTCA-TGTAAGTGGCTTCTACTCT--GGGGTGGCCAC  143

seq1  TTTACCTACTTTTCACTTCATGTCTGTTGGTGGCCT--GAAAAAGAGGAA  193
       ||| || ||||    |||||||||||  | |||||   |||||||| ||
seq2  -TTATCTTCTTTCATTTTCATGTCTGT--GGGGCCTTGAAAAAAGAGAAA  190

seq1  AAGGAGATGGGGCAGGGAATAGATATCTTCTTTTGTTCAAAGAAAAGTAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGGGGCAGGGAATAGATATCTTCTTTTGTTCAAAGAAAAGTAT  240

seq1  GAACTAAAAATACCAAACTATCAATAATGCAAATGATGCTGTGGGAGCCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAATACCAAACTATCAATAATGCAAATGATGCTGTGGGAGCCA  290

seq1  TCCTAAGAGACTCTCTGTTTTCTAGGATGAACATATATCTCTTGCTCTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAGACTCTCTGTTTTCTAGGATGAACATATATCTCTTGCTCTTT  340

seq1  GTGTATAGGAGATGCTGCAATGCAAATGAGAACTATTTCTGGGGAACCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAGGAGATGCTGCAATGCAAATGAGAACTATTTCTGGGGAACCTA  390

seq1  TTACACTTACAAAGTACTTTAAATAATTTTCATGGAGCTCAATTTATGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTACAAAGTACTTTAAATAATTTTCATGGAGCTCAATTTATGAG  440

seq1  TCAAAATTTTATTCCTTCAACAGGCAACGGTTTTATTATTCATTGGTCCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTTATTCCTTCAACAGGCAACGGTTTTATTATTCATTGGTCCC  490

seq1  ACCCACAGAACATGGGAGAATTAAGAGAGCTTCGTGAGCTTTTTACTTAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGAACATGGGAGAATTAAGAGAGCTTCGTGAGCTTTTTACTTAT  540

seq1  AAATGTTGCATAATTTCATATTCCGATAGCATGGAATATTTTTAAAGCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGCATAATTTCATATTCCGATAGCATGGAATATTTTTAAAGCTC  590

seq1  ATTTAAATCTACCTCAGTTATATTTGGAGTTTTCTTCTATAATAGTCATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCTACCTCAGTTATATTTGGAGTTTTCTTCTATAATAGTCATT  640

seq1  AAAAATGGGGACTGTGATGGGTCCTAAAAGTAGATAATGGAGAAAAAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGGACTGTGATGGGTCCTAAAAGTAGATAATGGAGAAAAAGAA  690

seq1  TTC  696
      |||
seq2  TTC  693