BAC Information

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BAC

Clone NameB6Ng01-015J20
Chromosome14 (Build37)
Map Location 85,325,332 - 85,326,407
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J20.bB6Ng01-015J20.g
ACCDH849822DH849823
length1,0601,156
definitionDH849822|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J20, 5' end.DH849823|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggctgtcttaaactcagagattcacctgcct
ctgcctctcaagtgctgggattataggcgtgcgccaccactacccagcag
aaaatattttctaaatttcctccttattgttgcaatgtatatcattctga
cacatgagtggaatgtaaagactttacctaaacattccacaggaaacagt
aagtaagtcacgatgatttaaaaatataaaatataaacaatctaaaacaa
aagaacatatatatttcaacaacaaaaggtgtacgtttatttattgttta
aattaaaaacttttttagaagctctactgtccccatataaaataaggttt
catttttcctgttagtgactatgtaaatgcaatggatggcacagacagag
aagtacagtggccaggcaggagctccggtcaaaggagagagcaaagattt
tgatttcatgcaaagtggccaccgattcagcttttaaatgacaggcagtg
gctgtgcaaaagcatactccttgctattttcaacattttgtgaaaactgg
aaagttatatattaatattccagtacaaaatgagaaaactaagggcaaat
ggaatttatcttggtctaagtagtagttaaggtcaatttccttttctcaa
gaagattaatacctaactatatcagttcaagagcaattgaatagatattc
tgttgtataggagaagagagaaaagattaggaaaaaaaaaactactcaag
ggaaatcacagaggaggtgctgcttaaatactaaaatgatgataaaacac
aaatagttacaggacaaaacaaaggaaacaaaacatttatcatagttata
gggaaacattgttttagttgatgtaattggttattacagaaaaattagta
caggaaaattatttgtagtacacaaatttgattggaccattcttagcttt
ctttattatttaaatttttttttctgattatacaagacatctgactgcac
ttactatctctttctccagtatatactaccacactacctctctcagaaac
atattttttt
gaattcaccttggtcacttaagaaggtatctatacagtttgctgggattt
gaacattataacgaatataacaaactgtaagacaaattgaaggtgtgggc
ctttaagaccgaataggatgcttaaaatctaaggtggcagatgtagccat
aaacctaagggaaggatatctactacaacaatgggaatctcagagtaata
ttcctccaatttcaggcagtagtgatctattttaactgacactgaatatt
gccatcttatgtaatatgccttgtttctgtatttatttatttatttattt
atttacttacttaattatttgtatttaagtttttaattctttagtccaga
ctttatcccctactggcctaccctctgactgttccaaatcccacaccttc
ccccctcccccaaccacatctccaagaggatatctccacctcacccacct
cagccgaccaccccactccctgcagccccaagtctcttgaggtttaggta
tatcttctctgattgagtccagacttggcagtcctctgctgtattaggga
ccacatatcagctggtgtatgtggcctggttggtggctcagtgtctgaga
gaacccgggaaccatgttagtggagactgctaatcttcctatggggttgc
cctcctccttaccttcttccagattttccctaattcaaccacagggttca
acacaggggtccattggttgggtgtaaatatctacatctgattctttcag
ctgcttgttgggtctttttgaggtctgtcataataggcccctatttgtaa
gcacaccatagtatcagtaatagtgtcaggcctttggaccctcctcctga
gctggatctcaatttgggcttataactggacttccttttcctcaggttct
tctccattgctgttcctgcagttctttcagacagcaacaatctgggttag
agatttttactgtgggatggtaacctcatccatttgataccctgtcttta
ctggagtggactctacagttcctcttctcactgtaaggcatttcatctaa
tgttccttcctttgatccaagtctctcactccagtctcttggtacattag
aagtccgtacttacttctaactcctgaggtgctgcttgaatttgggctga
ggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85325332_85326407
seq2: B6Ng01-015J20.b_44_1103 (reverse)

seq1  AAAAAAATATGTTTCTGGGAGAGAAGGGTAGTGGTGGTAGTATATACTGG  50
      ||||||||||||||||| ||||    |||||| |||||||||||||||||
seq2  AAAAAAATATGTTTCTGAGAGA----GGTAGT-GTGGTAGTATATACTGG  45

seq1  AAGGAAAGGAGATAGGTAAAGGTGCAGTCAAGATGTCTTGTATAATACAA  100
      |  |||| |||||| ||||  |||||||| ||||||||||||||||   |
seq2  A--GAAA-GAGATA-GTAA--GTGCAGTC-AGATGTCTTGTATAAT--CA  86

seq1  GAAAAAAAAATTTTAAATAATAAAGAAAGCTAAGAATGGTCCAATCAAAT  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAA-TTTAAATAATAAAGAAAGCTAAGAATGGTCCAATCAAAT  135

seq1  TTGTGTACTACAAATAATTTTCCTGTACTAATTTTTCTGTAATAACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTACTACAAATAATTTTCCTGTACTAATTTTTCTGTAATAACCAAT  185

seq1  TACATCCACTAAAACAATGTTTCCTTATTAACTATGATAAATGTTTTGTT  250
      |||||| ||||||||||||||||| || ||||||||||||||||||||||
seq2  TACATCAACTAAAACAATGTTTCCCTA-TAACTATGATAAATGTTTTGTT  234

seq1  TCCTTTGTTTTGTCCTGTAACTATTTGTGTTTTATCATCATTTTAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTTTGTCCTGTAACTATTTGTGTTTTATCATCATTTTAGTATT  284

seq1  TAAGCAGCACCTCCTCTGTGATTTCCCTTGAGTAGTTTTTTTTTTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCACCTCCTCTGTGATTTCCCTTGAGTAGTTTTTTTTTTCCTAA  334

seq1  TCTTTTCTCTCTTCTCCTATACAACAGAATATCTATTCAATTGCTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTCTTCTCCTATACAACAGAATATCTATTCAATTGCTCTTGA  384

seq1  ACTGATATAGTTAGGTATTAATCTTCTTGAGAAAAGGAAATTGACCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATAGTTAGGTATTAATCTTCTTGAGAAAAGGAAATTGACCTTAA  434

seq1  CTACTACTTAGACCAAGATAAATTCCATTTGCCCTTAGTTTTCTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTTAGACCAAGATAAATTCCATTTGCCCTTAGTTTTCTCATTTT  484

seq1  GTACTGGAATATTAATATATAACTTTCCAGTTTTCACAAAATGTTGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAATATTAATATATAACTTTCCAGTTTTCACAAAATGTTGAAAA  534

seq1  TAGCAAGGAGTATGCTTTTGCACAGCCACTGCCTGTCATTTAAAAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGAGTATGCTTTTGCACAGCCACTGCCTGTCATTTAAAAGCTGA  584

seq1  ATCGGTGGCCACTTTGCATGAAATCAAAATCTTTGCTCTCTCCTTTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTGGCCACTTTGCATGAAATCAAAATCTTTGCTCTCTCCTTTGACC  634

seq1  GGAGCTCCTGCCTGGCCACTGTACTTCTCTGTCTGTGCCATCCATTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCTGCCTGGCCACTGTACTTCTCTGTCTGTGCCATCCATTGCAT  684

seq1  TTACATAGTCACTAACAGGAAAAATGAAACCTTATTTTATATGGGGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTCACTAACAGGAAAAATGAAACCTTATTTTATATGGGGACAG  734

seq1  TAGAGCTTCTAAAAAAGTTTTTAATTTAAACAATAAATAAACGTACACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTCTAAAAAAGTTTTTAATTTAAACAATAAATAAACGTACACCT  784

seq1  TTTGTTGTTGAAATATATATGTTCTTTTGTTTTAGATTGTTTATATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGAAATATATATGTTCTTTTGTTTTAGATTGTTTATATTTTA  834

seq1  TATTTTTAAATCATCGTGACTTACTTACTGTTTCCTGTGGAATGTTTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATCATCGTGACTTACTTACTGTTTCCTGTGGAATGTTTAGG  884

seq1  TAAAGTCTTTACATTCCACTCATGTGTCAGAATGATATACATTGCAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTTACATTCCACTCATGTGTCAGAATGATATACATTGCAACAA  934

seq1  TAAGGAGGAAATTTAGAAAATATTTTCTGCTGGGTAGTGGTGGCGCACGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGAAATTTAGAAAATATTTTCTGCTGGGTAGTGGTGGCGCACGC  984

seq1  CTATAATCCCAGCACTTGAGAGGCAGAGGCAGGTGAATCTCTGAGTTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATCCCAGCACTTGAGAGGCAGAGGCAGGTGAATCTCTGAGTTTAA  1034

seq1  GACAGCCTGGTCTACAGAGTGAATTC  1076
      ||||||||||||||||||||||||||
seq2  GACAGCCTGGTCTACAGAGTGAATTC  1060