BAC Information

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BAC

Clone NameB6Ng01-015N02
Chromosome14 (Build37)
Map Location 39,345,092 - 39,454,495
singlet/doubletdoublet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015N02.bB6Ng01-015N02.g
ACCDH849975DH849976
length1,126856
definitionDH849975|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N02, 5' end.DH849976|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,345,092 - 39,346,257)(39,453,638 - 39,454,495)
sequence
gaattctcattgataatgaagaataaccttcatttaataatcatgaaagg
tgagagtttgtcctatagagctgcacttttttaaagtaccttaaagtgtt
actatttatttatttactacacttatatatttatttatgaggggcctgtg
tgtggtgccatatgtatatataagttggaggacaattttggggaattggt
tctctcttttcaccatatgggtctgagggattgaacacatgctatgcacc
tgtgtaacaatgtactttacctgctgaaatatcttgttgaccctaaagta
cgttttaataatagattttggggggtagagtcatctactcattctatcat
tctctatatttcaggatggcataattaaatgatgtcttagtaccatggat
ttctgtgtctccattgacaagaagctaagtccttttgtgtccctattgac
tttctccttttgtaaaaattccatggttggaaaatgtctcagggctgttc
tacacaagttgggttatttgttcagatcatagtgggtggttcatctttcg
aagtttttctccatctttactcttacccagaaaacaaggtaaaatgctag
gaacagaattccttatatctaatgctaaatcttccaacaagaagagagtg
tgactgtaataagtatggattatcagcaatctatacctgagtcagagagt
aggaaaaaagtgcatattctaaaagtagcgtaattctcatggtaagtttt
atccatttaagttatccgtatgtccatatggaatttgagtgcatatgagc
atacacatttacagcagtttaaagatgagactagactatcttaccttaac
atacttcttttgacatcttttactgatcagtgcagtggatcttataactt
cactgtgctgtatctctttcattttacacatttctttgtttccctttcat
aaatattgcatttctcatgccactactctgcatatagaatacttgaaacc
aatgtgactttttgattggttttcctacacgtgtagcatgaataataaaa
tgcattcacctatccgcatgcactgtcagcctgctgtcgtttctactggg
agactctggcgagtctgaatcgctca
gaattcctgttactcaggagttgctttgatgtttattagacaagtgtgct
ctagtggaaaaaggaaacagcatctagaaagcagtaaaaagaaaatgtcc
agtcaaaacattaattattaaattctgctcttcaccctgcttctccctga
ttgaaatgtactgaaagaatttggtgtgtgttttagaataatgatggtgc
atgcatgtaaatatttactttctcgtaatataggagcaggggttgctgac
tgaattttagtttgtggcatgagcaaatatcatctatctgaacatgaatt
tttgaattattgtgaaatgtcatctcttaacagacatagcaagccatatc
taagtaataaaatttaatatgagatttgacttctattcacattttgtgtg
ttcaaggttttcatttcagaaaggctaatattgctttgcagaagttaaac
cctcttactttcaattcaattgctttgatgtgcctatttctttgaacaaa
aactctctttttaaatgctcttttgatatataagcttctagttgccttga
agttattcctgaaagcaaatcgctgatgaaggcttctagagtttgaaaaa
aaaaaaaagaagtacttatttcgatacatttgttgatgtatttttgatag
gtaatgggctaaaatttactatttaaaaaaaatcctttttgtgtgaatat
tcaaaattaaacagcagggaagagcattgtctaaagcatgaggggagttt
gggaaaaggcttttgctttaccatgggacctgtcttgcttgtttccctgt
gaagctcagacagtgtggatgaagacagaaatggtcagacaagcttttaa
ggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_39345092_39346257
seq2: B6Ng01-015N02.b_45_1170

seq1  GAATTCTCATTGATAATGAAGAATAACCTTCATTTAATAATCATGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGATAATGAAGAATAACCTTCATTTAATAATCATGAAAGG  50

seq1  TGAGAGTTTGTCCTATAGAGCTGCACTTTTTTAAAGTACCTTAAAGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTTGTCCTATAGAGCTGCACTTTTTTAAAGTACCTTAAAGTGTT  100

seq1  ACTATTTATTTATTTACTACACTTATATATTTATTTATGAGGGGCCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTATTTATTTACTACACTTATATATTTATTTATGAGGGGCCTGTG  150

seq1  TGTGGTGCCATATGTATATATAAGTTGGAGGACAATTTTGGGGAATTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCCATATGTATATATAAGTTGGAGGACAATTTTGGGGAATTGGT  200

seq1  TCTCTCTTTTCACCATATGGGTCTGAGGGATTGAACACATGCTATGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTCACCATATGGGTCTGAGGGATTGAACACATGCTATGCACC  250

seq1  TGTGTAACAATGTACTTTACCTGCTGAAATATCTTGTTGACCCTAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACAATGTACTTTACCTGCTGAAATATCTTGTTGACCCTAAAGTA  300

seq1  CGTTTTAATAATAGATTTTGGGGGGTAGAGTCATCTACTCATTCTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAATAATAGATTTTGGGGGGTAGAGTCATCTACTCATTCTATCAT  350

seq1  TCTCTATATTTCAGGATGGCATAATTAAATGATGTCTTAGTACCATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATTTCAGGATGGCATAATTAAATGATGTCTTAGTACCATGGAT  400

seq1  TTCTGTGTCTCCATTGACAAGAAGCTAAGTCCTTTTGTGTCCCTATTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCTCCATTGACAAGAAGCTAAGTCCTTTTGTGTCCCTATTGAC  450

seq1  TTTCTCCTTTTGTAAAAATTCCATGGTTGGAAAATGTCTCAGGGCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTTGTAAAAATTCCATGGTTGGAAAATGTCTCAGGGCTGTTC  500

seq1  TACACAAGTTGGGTTATTTGTTCAGATCATAGTGGGTGGTTCATCTTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGTTGGGTTATTTGTTCAGATCATAGTGGGTGGTTCATCTTTCG  550

seq1  AAGTTTTTCTCCATCTTTACTCTTACCCAGAAAACAAGGTAAAATGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTCTCCATCTTTACTCTTACCCAGAAAACAAGGTAAAATGCTAG  600

seq1  GAACAGAATTCCTTATATCTAATGCTAAATCTTCCAACAAGAAGAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAATTCCTTATATCTAATGCTAAATCTTCCAACAAGAAGAGAGTG  650

seq1  TGACTGTAATAAGTATGGATTATCAGCAATCTATACCTGAGTCAGAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTAATAAGTATGGATTATCAGCAATCTATACCTGAGTCAGAGAGT  700

seq1  AGGAAAAAAGTGCATATTCTAAAAGTAGCGTAATTCTCATGGTAAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAGTGCATATTCTAAAAGTAGCGTAATTCTCATGGTAAGTTTT  750

seq1  ATCCATTTAAGTTATCCGTATGTCCATATGGAATTTGAGTGCATATGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTAAGTTATCCGTATGTCCATATGGAATTTGAGTGCATATGAGC  800

seq1  ATACACATTTACAGCAGTTTAAAGATGAGACTAGACTATCTTACCTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATTTACAGCAGTTTAAAGATGAGACTAGACTATCTTACCTTAAC  850

seq1  AATACTTCTTTTGACCATCTTTTACTGATCAGTGCAGTGGATCTTTATAA  900
       ||||||||||||| |||||||||||||||||||||||||||| |||| |
seq2  -ATACTTCTTTTGA-CATCTTTTACTGATCAGTGCAGTGGATC-TTAT-A  896

seq1  ACTTCCACTGTGCTGTATCTCTTTCATTTTACACATTTCTTTGTTTCCCT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTT-CACTGTGCTGTATCTCTTTCATTTTACACATTTCTTTGTTTCCC-  944

seq1  TTTCATAAATATTTGCATTTTCTCATGCCCACTTACTCTTGCATATTAGA  1000
      ||||||||||| ||||| ||||||||| |||| ||||| |||||| ||| 
seq2  TTTCATAAATA-TTGCA-TTTCTCATG-CCAC-TACTC-TGCATA-TAG-  987

seq1  AATACTTGAAAACAAATGTTGACTTTTTTTGATTTTTGTTTTTTCTTACC  1050
      |||||||| |||| |||| ||||  |||||||||      ||||| ||| 
seq2  AATACTTG-AAACCAATG-TGAC--TTTTTGATT----GGTTTTCCTAC-  1028

seq1  AACGTGTAGCATGAAATAATAAAATGCAATCCACCCTATTCTGGCAATGC  1100
       |||||||||||| |||||||||||||| ||   ||||| |  || ||||
seq2  -ACGTGTAGCATG-AATAATAAAATGCATTC--ACCTATCC--GC-ATGC  1071

seq1  ACTGTCAGGCTGGCCTGTCTGTTCTCATCTTGTGGAGACTCTGCCCCAGA  1150
      |||||||| |||  |||||  ||||  |     |||||||||| |   ||
seq2  ACTGTCAGCCTG--CTGTCGTTTCTACT----GGGAGACTCTGGC---GA  1112

seq1  GCTCTGAAATCGCTCA  1166
      | |||| |||||||||
seq2  G-TCTG-AATCGCTCA  1126

seq1: chr14_39453638_39454495
seq2: B6Ng01-015N02.g_68_923 (reverse)

seq1  CCTTCCTTAAAAGCTTTGTCTGACCATTTCTGTCTTCATCCACACTGTCT  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTAAAAGC-TTGTCTGACCATTTCTGTCTTCATCCACACTGTCT  49

seq1  GAGCTTCACAGGGTAAACAAGCAAGACAGGTCCCATGGTAAAGCAAAAGC  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCACAGGG-AAACAAGCAAGACAGGTCCCATGGTAAAGCAAAAGC  98

seq1  CTTTTCCCAAACTCCCCTCCTGCTTTAGACAATGCTCTTCCCTGCTGTTT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTTCCCAAACTCCCCTCATGCTTTAGACAATGCTCTTCCCTGCTGTTT  148

seq1  AATTTTGAATATTCACACAAAAAGGATTTTTTTTAAATAGTAAATTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAATATTCACACAAAAAGGATTTTTTTTAAATAGTAAATTTTAG  198

seq1  CCCATTACCTATCAAAAATACATCAACAAATGTATCGAAATAAGTACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACCTATCAAAAATACATCAACAAATGTATCGAAATAAGTACTTC  248

seq1  TTTTTTTTTTTTTCAAACTCTAGAAGCCTTCATCAGCGATTTGCTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCAAACTCTAGAAGCCTTCATCAGCGATTTGCTTTCAG  298

seq1  GAATAACTTCAAGGCAACTAGAAGCTTATATATCAAAAGAGCATTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTTCAAGGCAACTAGAAGCTTATATATCAAAAGAGCATTTAAAA  348

seq1  AGAGAGTTTTTGTTCAAAGAAATAGGCACATCAAAGCAATTGAATTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTTTTGTTCAAAGAAATAGGCACATCAAAGCAATTGAATTGAAA  398

seq1  GTAAGAGGGTTTAACTTCTGCAAAGCAATATTAGCCTTTCTGAAATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGGTTTAACTTCTGCAAAGCAATATTAGCCTTTCTGAAATGAAA  448

seq1  ACCTTGAACACACAAAATGTGAATAGAAGTCAAATCTCATATTAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAACACACAAAATGTGAATAGAAGTCAAATCTCATATTAAATTTT  498

seq1  ATTACTTAGATATGGCTTGCTATGTCTGTTAAGAGATGACATTTCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAGATATGGCTTGCTATGTCTGTTAAGAGATGACATTTCACAAT  548

seq1  AATTCAAAAATTCATGTTCAGATAGATGATATTTGCTCATGCCACAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAAATTCATGTTCAGATAGATGATATTTGCTCATGCCACAAACT  598

seq1  AAAATTCAGTCAGCAACCCCTGCTCCTATATTACGAGAAAGTAAATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGTCAGCAACCCCTGCTCCTATATTACGAGAAAGTAAATATTT  648

seq1  ACATGCATGCACCATCATTATTCTAAAACACACACCAAATTCTTTCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCACCATCATTATTCTAAAACACACACCAAATTCTTTCAGTA  698

seq1  CATTTCAATCAGGGAGAAGCAGGGTGAAGAGCAGAATTTAATAATTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATCAGGGAGAAGCAGGGTGAAGAGCAGAATTTAATAATTAATG  748

seq1  TTTTGACTGGACATTTTCTTTTTACTGCTTTCTAGATGCTGTTTCCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTGGACATTTTCTTTTTACTGCTTTCTAGATGCTGTTTCCTTTT  798

seq1  TCCACTAGAGCACACTTGTCTAATAAACATCAAAGCAACTCCTGAGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGAGCACACTTGTCTAATAAACATCAAAGCAACTCCTGAGTAAC  848

seq1  AGGAATTC  858
      ||||||||
seq2  AGGAATTC  856