BAC Information

Click to search

BAC

Clone NameB6Ng01-015N03
Chromosome14 (Build37)
Map Location 88,900,509 - 88,901,608
singlet/doubletsinglet
Overlap genenone
Upstream geneTdrd3, LOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015N03.bB6Ng01-015N03.g
ACCDH849977DH849978
length1,0851,119
definitionDH849977|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N03, 5' end.DH849978|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagttttaagtcattaacacagaatacatcttgagttaagaat
aaatgttgtttgagttaaaagaatagtgatcataactttaacttttgttt
tgtagaatatgaaaagtcaagttattgcataattcaaaattcagatgcat
caaacataactctgtttgaataataaaagcataatttgcaccagcagctg
gctcttctgtaataagttactagattacttgttttacatagtcagcattt
gcatagattataagtcaggtttaaaagccaaatgaaactgcatgctacga
gttccatatagcctgcaaacaatctgaaatgcatttgtagtttgggtatc
tgaaacttaatatataactcaaatggagagagaattcaatttcacttgga
tgcattagactgtacttcttaaaatggttaagtcagtgtgcctttatcct
ctttgttatatatttgtcaggcaagattatttattttgatgaagaaagaa
tattgttgtggctattaatactgtttacaattataaactatagtaattta
tatgtatagaactataagcatacctttgtgaggctatcccaccagacaga
gctgttagcagcccacttatgaatttctttatgttgataacttttaaact
taattaaataagcttaaaagtgatctccattaaagtttattgggcttttc
tgtgtgtagaatgacttagtgtctctgttttttttcataattgtcataat
ttcattttattctaagacaggaccaatgaattccatcagtaaaaggctat
caaaagaaatagccacatgaaaaccatgtgtttaattactctatttttcc
ttagacaaacttctatatacttgataaatctttctaaagcttctttcaga
attaccaacaaaatattgtatatttttaacttcaaaatctataaggaaaa
caatttatatattcaaagcagattttagagctggtttggtttattactat
ttttttataatgatgatgatgatgggttagtggggaatgaccaatacgac
ttgaagacctgagtgtgggtttttggggggccatt
gaattctttggtggttcccagaactggagacttcattggccaacaagtga
catgcagttagtgttctgtcctattatttggcaatcaaggtaaatttaca
cacacacacacacacacacacacacacacacacacacacactaaaacaca
ctcacacatgtgcacatgcacatgcacacagaagagggagaaggatacac
acattaaagattctgttatattcagttgtcaaataacttgccaaatgccc
cttaaatttaactgtccatccatcaattcctgcccttaaacacttgtatc
ctcccttccctgtttgatcatcatcttccagatcttccctacccttcatg
actatctattctatttctgcttcctcaagtaatttcagtcacttcccagt
atcttactccatgctaaactactataattatatggattatagtatgatta
ttgaagatttaactaacatcaatatataagtgaaaacatatcattctgtt
gattttgtctgagttattttacacaagctgattttatctaactgaaaatt
ttatgatttcattattttaaaattggagtaatatttggttgtgtaaatgt
accacattttctttatctactcactatgacctcattgacagatttaatct
gtttccactttgactcctacaattcttcttccctctctttcagcaagatt
ccctaaacttggtctaatgttttaattgtgggtctttacatttatcttca
tcagttgctgaatgaaatcttacagatggtgattatgctaggctttgcat
acgagtaaaatataatataattagaaattattcattgctgctttattttt
tatttttgttatttgtttgtttattcattttatttgacattcatgttggc
tctatcctaggtctctgggctaacatcttcaagtatgtattctccagtgg
tgtcctcgtgggatccctcctccagaagtggccacaagatcgaccaatcc
attgactgctcactaaacagtctaagaatgctttaacccttgaaatctta
accatgacaattgtagacaaatgtgctgggtgggtgtccaacctctctct
ggaaatcatcacggttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88900509_88901608
seq2: B6Ng01-015N03.b_45_1129

seq1  GAATTCTTAGTTTTAAGTCATTAACACAGAATACATCTTGAGTTAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTTTAAGTCATTAACACAGAATACATCTTGAGTTAAGAAT  50

seq1  AAATGTTGTTTGAGTTAAAAGAATAGTGATCATAACTTTAACTTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTTTGAGTTAAAAGAATAGTGATCATAACTTTAACTTTTGTTT  100

seq1  TGTAGAATATGAAAAGTCAAGTTATTGCATAATTCAAAATTCAGATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATATGAAAAGTCAAGTTATTGCATAATTCAAAATTCAGATGCAT  150

seq1  CAAACATAACTCTGTTTGAATAATAAAAGCATAATTTGCACCAGCAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAACTCTGTTTGAATAATAAAAGCATAATTTGCACCAGCAGCTG  200

seq1  GCTCTTCTGTAATAAGTTACTAGATTACTTGTTTTACATAGTCAGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGTAATAAGTTACTAGATTACTTGTTTTACATAGTCAGCATTT  250

seq1  GCATAGATTATAAGTCAGGTTTAAAAGCCAAATGAAACTGCATGCTACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATTATAAGTCAGGTTTAAAAGCCAAATGAAACTGCATGCTACGA  300

seq1  GTTCCATATAGCCTGCAAACAATCTGAAATGCATTTGTAGTTTGGGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATATAGCCTGCAAACAATCTGAAATGCATTTGTAGTTTGGGTATC  350

seq1  TGAAACTTAATATATAACTCAAATGGAGAGAGAATTCAATTTCACTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAATATATAACTCAAATGGAGAGAGAATTCAATTTCACTTGGA  400

seq1  TGCATTAGACTGTACTTCTTAAAATGGTTAAGTCAGTGTGCCTTTATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGACTGTACTTCTTAAAATGGTTAAGTCAGTGTGCCTTTATCCT  450

seq1  CTTTGTTATATATTTGTCAGGCAAGATTATTTATTTTGATGAAGAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTATATATTTGTCAGGCAAGATTATTTATTTTGATGAAGAAAGAA  500

seq1  TATTGTTGTGGCTATTAATACTGTTTACAATTATAAACTATAGTAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTGGCTATTAATACTGTTTACAATTATAAACTATAGTAATTTA  550

seq1  TATGTATAGAACTATAAGCATACCTTTGTGAGGCTATCCCACCAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAGAACTATAAGCATACCTTTGTGAGGCTATCCCACCAGACAGA  600

seq1  GCTGTTAGCAGCCCACTTATGAATTTCTTTATGTTGATAACTTTTAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGCAGCCCACTTATGAATTTCTTTATGTTGATAACTTTTAAACT  650

seq1  TAATTAAATAAGCTTAAAAGTGATCTCCATTAAAGTTTATTGGGCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATAAGCTTAAAAGTGATCTCCATTAAAGTTTATTGGGCTTTTC  700

seq1  TGTGTGTAGAATGACTTAGTGTCTCTGTTTTTTTTCATAATTGTCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAGAATGACTTAGTGTCTCTGTTTTTTTTCATAATTGTCATAAT  750

seq1  TTCATTTTATTCTAAGACAGGACCAATGAATTCCATCAGTAAAAGGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATTCTAAGACAGGACCAATGAATTCCATCAGTAAAAGGCTAT  800

seq1  CAAAAGAAATAGCCACATGAAAACCATGTGTTTAATTACTCTATTTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAATAGCCACATGAAAACCATGTGTTTAATTACTCTATTTTTCC  850

seq1  TTAGACAAACTTCTATATACTTGATAAATCTTTCTAAAGCTTCTTTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAACTTCTATATACTTGATAAATCTTTCTAAAGCTTCTTTCAGA  900

seq1  ATTACCAACAAAATATTGTATATTTTTTAACTTCAAAAATCTAATAAGGA  950
      |||||||||||||||||||||| ||||||||||| ||||||| |||||||
seq2  ATTACCAACAAAATATTGTATA-TTTTTAACTTC-AAAATCT-ATAAGGA  947

seq1  AAACAATTTATATATTCAAAGCAGATTTTAGAAGCTGTTTTGTTTTATTT  1000
      ||||||||||||||||||||||||||||||| ||||| |||| ||||  |
seq2  AAACAATTTATATATTCAAAGCAGATTTTAG-AGCTGGTTTGGTTTA--T  994

seq1  TACTATTTTTTTTATTATTGATTGATTGATGATTGGTTTAGTTGTGGATG  1050
      ||||||||||||   || ||| ||| |||||| ||| ||||| | | |||
seq2  TACTATTTTTTT--ATAATGA-TGA-TGATGA-TGGGTTAGTGGGGAATG  1039

seq1  AACTAATACGAACTTGAGAAACTGAGTTGTGGTTTTTTTGGGGGGGCATT  1100
       || |||||| ||||||  | ||||| |||||  ||||||||||| ||||
seq2  -ACCAATACG-ACTTGAAGACCTGAG-TGTGG-GTTTTTGGGGGGCCATT  1085