BAC Information

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BAC

Clone NameB6Ng01-016C11
Chromosome14 (Build37)
Map Location 122,555,079 - 122,688,998
singlet/doubletdoublet
Overlap geneTm9sf2, Clybl, 1700108J01Rik
Upstream geneFarp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, LOC621710
Downstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4, Vgcnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C11.bB6Ng01-016C11.g
ACCDH850208DH850209
length1,0321,097
definitionDH850208|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C11, 5' end.DH850209|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,687,958 - 122,688,998)(122,555,079 - 122,556,172)
sequence
gaattcattaaaaacaaaaaacaaaaaccagctagctgtggtaacctgct
gctgtaatccccaccttcctgcatcaacatgagaggtaagagagcagaat
ctatgggcttgttggccagctagcctggagactctgcatcaataatgtgg
aaggctagactcacactcattcattttctaaaaaaaaaaaaaaaaaaaaa
aaaaaactcagcaaaaagtgactgtatttgttacaacttagaacaaaact
caaaaaacatcatttaccttgaaggaccagataggagatatttcagcctt
ttaggggctgaagcgtgtgaggtgatcacagacgggtgcctgcaaataag
ataccaacctccacagattttttatgcaattaaaaaataaaattaggtgc
aagtttttgataatatcctgcaagaaaaaaaatgagaatctactttaggg
ggtagtattttacttaattggcattcaaagataatgtgcccattaactca
tttcccctggaaaaaccattcctaggcaaaggctatgcaggaacaggtgg
tgggtatgcagaggctggggcatagcttagttgtctagagcacttgtcta
gagtaaacaacctgaattaaagtatctgtctccaggtctcgccacagtca
agtgtctacaccctgcaatctcaacatttcagagaggggatgtagatgac
agaggggccccagccagtagcagagtaggatgatccaccgagaagccttg
tcaactccagcccggagtaagccttgtcaaaacattgtgagtggcagtgt
cccacgccgctctccacattgagctgggaggttggagggggacagcctgg
aagccccacaccatcctccacgttgcgatgggaggctggaggacttttac
atctactgtttgccactctcttggctgcatttttttttttacctctaaat
ttccctacctccctcaccctccgatcctgagccatgcattccttttgggg
ccagtctaagggatcagttttgtgttctaagt
gaattccaaaccaacccctttttatttaaagccaatttgtttacatagca
gaaataactccctgtaatctaagaaaaggtcccttttggaatgggtgctg
tgttccgtaggcttcagggcagtgatgaatgctctgttgtcaccatttgg
tctatgacatgaagcctgacctctctcaagtcttttcctgatccaaaagg
tgatcttgagcccttccactagcacacagcccacacataaccagttctca
acacattccagtggaaggatgcatatatcacatgaataacctcccagatc
tgtccccaatactgtgtatagatttagaaaatcttgagtacttttttttg
tgtattacatttaaaataatgatgaaaaccagaagggatatgaagcagaa
gctgctcacaggggcacatgggtccttgtatatatagatctgtaccctac
atgttgggcatttcccagagttttttcctaagcatttcctaaggaaaata
gtttgttaaacaggtttacagtgtttacagtatgctggcagttttacagt
gtatatacatgctcctgcagagcagagtctgagttgatgcttactaagct
caagtgtggtttaagcttttccactggaggacatttccatgccccctgct
ttacagctttaaagtgggtatacaaattaaacacttgctgattaataata
aagaacattattttaaaataattgtttggtgtataatttaaccatttatt
aaagattaaacaactttgcagagaccagagagatttgctctgtggttaaa
aagtatgtactactctttcagaggacctgagtttagatcctgggatccca
tgtttaggtgactcacaaccacctgcaattgtagccctgacttccccttg
tcatagggcatctgtgcatacccatggcataaacacgtgatcttaaaaat
aataaatggaatctttaaaattgaattgactagatgtggcttgtttgtct
acatggctgtaatcctagatccacttacatgaatattgatgaggaaatat
gggttagaaagagtaagcctttgattttccccaacaaataactgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_122687958_122688998
seq2: B6Ng01-016C11.b_45_1076 (reverse)

seq1  ACTTAGAAACACAAAACTGATCCCTTAGAACTTGCCCCCAAAAGAAATGC  50
      |||||| ||||||||||||||||||||||   || ||||||||| |||||
seq2  ACTTAG-AACACAAAACTGATCCCTTAGA--CTGGCCCCAAAAGGAATGC  47

seq1  ATTGACATCAGGATCGGAAGAGTGAGGGAAGTTAGAGAAATTTAGAGTTA  100
      || |   |||||||||| || ||||||| || ||| ||||||||||| ||
seq2  ATGG--CTCAGGATCGG-AGGGTGAGGG-AGGTAGGGAAATTTAGAGGTA  93

seq1  AAAAAAAAAATGCAGCCCAAGAGAGTGTGCAAACAGTAGATGTAAAAGTC  150
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  AAAAAAAAAATGCAG-CCAAGAGAGTG-GCAAACAGTAGATGTAAAAGTC  141

seq1  CTCCAGCCTCCCATCGCAACGTGGAGGATGGTGTGGGGCTTCCAGGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTCCCATCGCAACGTGGAGGATGGTGTGGGGCTTCCAGGCTGT  191

seq1  CCCCCTCCAACCTCCCAGCTCAATGTGGAGAGCGGCGTGGGACACTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCAACCTCCCAGCTCAATGTGGAGAGCGGCGTGGGACACTGCCA  241

seq1  CTCACAATGTTTTGACAAGGCTTACTCCGGGCTGGAGTTGACAAGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATGTTTTGACAAGGCTTACTCCGGGCTGGAGTTGACAAGGCTTC  291

seq1  TCGGTGGATCATCCTACTCTGCTACTGGCTGGGGCCCCTCTGTCATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGATCATCCTACTCTGCTACTGGCTGGGGCCCCTCTGTCATCTAC  341

seq1  ATCCCCTCTCTGAAATGTTGAGATTGCAGGGTGTAGACACTTGACTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTCTGAAATGTTGAGATTGCAGGGTGTAGACACTTGACTGTGG  391

seq1  CGAGACCTGGAGACAGATACTTTAATTCAGGTTGTTTACTCTAGACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCTGGAGACAGATACTTTAATTCAGGTTGTTTACTCTAGACAAGT  441

seq1  GCTCTAGACAACTAAGCTATGCCCCAGCCTCTGCATACCCACCACCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGACAACTAAGCTATGCCCCAGCCTCTGCATACCCACCACCTGTT  491

seq1  CCTGCATAGCCTTTGCCTAGGAATGGTTTTTCCAGGGGAAATGAGTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATAGCCTTTGCCTAGGAATGGTTTTTCCAGGGGAAATGAGTTAAT  541

seq1  GGGCACATTATCTTTGAATGCCAATTAAGTAAAATACTACCCCCTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATTATCTTTGAATGCCAATTAAGTAAAATACTACCCCCTAAAGT  591

seq1  AGATTCTCATTTTTTTTCTTGCAGGATATTATCAAAAACTTGCACCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCATTTTTTTTCTTGCAGGATATTATCAAAAACTTGCACCTAAT  641

seq1  TTTATTTTTTAATTGCATAAAAAATCTGTGGAGGTTGGTATCTTATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTAATTGCATAAAAAATCTGTGGAGGTTGGTATCTTATTTGC  691

seq1  AGGCACCCGTCTGTGATCACCTCACACGCTTCAGCCCCTAAAAGGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCCGTCTGTGATCACCTCACACGCTTCAGCCCCTAAAAGGCTGAA  741

seq1  ATATCTCCTATCTGGTCCTTCAAGGTAAATGATGTTTTCTGAGTTTTGTT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATCTCCTATCTGGTCCTTCAAGGTAAATGATGTTTTTTGAGTTTTGTT  791

seq1  CTAAGTTGTAACAAATACAGTCACTTTTTGCTGAGTTTTTTTTTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGTAACAAATACAGTCACTTTTTGCTGAGTTTTTTTTTTTTTTT  841

seq1  TTTTTTTTTTTTAGAAAATGAATGAGTGTGAGTCTAGCCTTCCACATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAGAAAATGAATGAGTGTGAGTCTAGCCTTCCACATTAT  891

seq1  TGATGCAGAGTCTCCAGGCTAGCTGGCCAACAAGCCCATAGATTCTGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGAGTCTCCAGGCTAGCTGGCCAACAAGCCCATAGATTCTGCTC  941

seq1  TCTTACCTCTCATGTTGATGCAGGAAGGTGGGGATTACAGCAGCAGGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTCTCATGTTGATGCAGGAAGGTGGGGATTACAGCAGCAGGTTA  991

seq1  CCACAGCTAGCTGGTTTTTGTTTTTTGTTTTTAATGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTAGCTGGTTTTTGTTTTTTGTTTTTAATGAATTC  1032

seq1: chr14_122555079_122556172
seq2: B6Ng01-016C11.g_69_1165

seq1  GAATTCCAAACCAACCCCTTTTTATTTAAAGCCAATTTGTTTACATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCAACCCCTTTTTATTTAAAGCCAATTTGTTTACATAGCA  50

seq1  GAAATAACTCCCTGTAATCTAAGAAAAGGTCCCTTTTGGAATGGGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACTCCCTGTAATCTAAGAAAAGGTCCCTTTTGGAATGGGTGCTG  100

seq1  TGTTCCGTAGGCTTCAGGGCAGTGATGAATGCTCTGTTGTCACCATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGTAGGCTTCAGGGCAGTGATGAATGCTCTGTTGTCACCATTTGG  150

seq1  TCTATGACATGAAGCCTGACCTCTCTCAAGTCTTTTCCTGATCCAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACATGAAGCCTGACCTCTCTCAAGTCTTTTCCTGATCCAAAAGG  200

seq1  TGATCTTGAGCCCTTCCACTAGCACACAGCCCACACATAACCAGTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGAGCCCTTCCACTAGCACACAGCCCACACATAACCAGTTCTCA  250

seq1  ACACATTCCAGTGGAAGGATGCATATATCACATGAATAACCTCCCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCCAGTGGAAGGATGCATATATCACATGAATAACCTCCCAGATC  300

seq1  TGTCCCCAATACTGTGTATAGATTTAGAAAATCTTGAGTACTTTTTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAATACTGTGTATAGATTTAGAAAATCTTGAGTACTTTTTTTTG  350

seq1  TGTATTACATTTAAAATAATGATGAAAACCAGAAGGGATATGAAGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACATTTAAAATAATGATGAAAACCAGAAGGGATATGAAGCAGAA  400

seq1  GCTGCTCACAGGGGCACATGGGTCCTTGTATATATAGATCTGTACCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCACAGGGGCACATGGGTCCTTGTATATATAGATCTGTACCCTAC  450

seq1  ATGTTGGGCATTTCCCAGAGTTTTTTCCTAAGCATTTCCTAAGGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGCATTTCCCAGAGTTTTTTCCTAAGCATTTCCTAAGGAAAATA  500

seq1  GTTTGTTAAACAGGTTTACAGTGTTTACAGTATGCTGGCAGTTTTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAAACAGGTTTACAGTGTTTACAGTATGCTGGCAGTTTTACAGT  550

seq1  GTATATACATGCTCCTGCAGAGCAGAGTCTGAGTTGATGCTTACTAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACATGCTCCTGCAGAGCAGAGTCTGAGTTGATGCTTACTAAGCT  600

seq1  CAAGTGTGGTTTAAGCTTTTCCACTGGAGGACATTTCCATGCCCCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGTTTAAGCTTTTCCACTGGAGGACATTTCCATGCCCCCTGCT  650

seq1  TTACAGCTTTAAAGTGGGTATACAAATTAAACACTTGCTGATTAATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTTAAAGTGGGTATACAAATTAAACACTTGCTGATTAATAATA  700

seq1  AAGAACATTATTTTAAAATAATTGTTTGGTGTATAATTTAACCATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTATTTTAAAATAATTGTTTGGTGTATAATTTAACCATTTATT  750

seq1  AAAGATTAAACAACTTTGCAGAGACCAGAGAGA-TTGCTCTGTGGTTAAA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGATTAAACAACTTTGCAGAGACCAGAGAGATTTGCTCTGTGGTTAAA  800

seq1  AAGTATGTACTACTC-TTCAGAGGACCTGAGTTTAGATCCT-GGAACCCA  847
      ||||||||||||||| ||||||||||||||||||||||||| ||| ||||
seq2  AAGTATGTACTACTCTTTCAGAGGACCTGAGTTTAGATCCTGGGATCCCA  850

seq1  TG-TTAGGTGACTCACAACCACCTGCAATTGTAGCCCTGACTTCCCC-TG  895
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTTTAGGTGACTCACAACCACCTGCAATTGTAGCCCTGACTTCCCCTTG  900

seq1  TCATAGGGCATCTGTGCATACCCAT-GCATAAACACGTGATCTTAAAAAT  944
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATAGGGCATCTGTGCATACCCATGGCATAAACACGTGATCTTAAAAAT  950

seq1  AATAAAATGGAATCTTTAAAAATTGATTGACTAGATGT-GCTTGTTTGTC  993
      ||| ||||||||||||||||| |  ||||||||||||| |||||||||||
seq2  AAT-AAATGGAATCTTTAAAATTGAATTGACTAGATGTGGCTTGTTTGTC  999

seq1  TAACAT-GCTGTAATCCTAAGATCCACTTACATGATATA-TGATGA-GAA  1040
      | |||| ||||||||||| |||||||||||||||| ||| |||||| |||
seq2  T-ACATGGCTGTAATCCT-AGATCCACTTACATGA-ATATTGATGAGGAA  1046

seq1  ATAATGGTTAGAAAAGAGTAAAGGTCTTTG-TTTTCCACAACAAAATAAC  1089
      |||  |||||| |||||||||  | ||||| |||||| |||| |||||||
seq2  ATATGGGTTAG-AAAGAGTAA--GCCTTTGATTTTCCCCAAC-AAATAAC  1092

seq1  TGTTA  1094
      |||||
seq2  TGTTA  1097