BAC Information

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BAC

Clone NameB6Ng01-016G08
Chromosome14 (Build37)
Map Location 43,410,816 - 43,702,570
singlet/doubletdoublet
Overlap geneLOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130
Upstream geneLOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055
Downstream geneLOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016G08.bB6Ng01-016G08.g
ACCDH850368DH850369
length3631,139
definitionDH850368|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G08, 5' end.DH850369|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,410,816 - 43,411,182)(43,701,428 - 43,702,570)
sequence
tctggaaagctcttttgcaacatttatacttacaccttttcagataatca
gtgtgaatctctaaaaggtattctattgctgctactctgaggatgaaatt
tccagggtttggacatgcctcaattgcctcttgccccaggcctgcttccc
tcagcccctagctctctggcctcacaaaaatcaatagtctataaatcatt
aagagactcttggagtctcctgacaaacacagccaaaggatgtctcccat
gccttatattgggactttttatttgatagcctatggctcttggggaagac
ttttttcccagtagcatctctctctctctctctctctctctctctctctc
tctctctctctat
gaattctttttatagtgaggaattgttctgtaatcttttgagtcccatta
ccttttacagagaagaaaggggacagaagtaattgaagctcatgggtatt
taaaatctatactcaattaggttagggaggggagctgggaaactgatgag
ataacaatcaataaagctagggtcaggaggccattcaggtgtgaatttat
atttctgagtgacttttctactctttttttataatttatttttattcatt
ttctaatcagaaatacaaatagggagaaaaccaacaaagaatgtttcatg
acacatgaagcaaaaataaaagcaactatatgaaacaccaggaaaaatac
atatacctcctatcaaagacaaaaaaactgatccctttaagatagaagga
acacagaagtcaaggaaattctggcatcccagtgcaaaatcaaggttgag
aaggaggggatgacccaaatctgctgaaagagaagtatgcctcttagaca
cactgtcacactcctgagaaagaaatgcatatggtcaaattctcttagct
accagaatgacaggaatcttcgtctccaccagacatatttcagtgggcct
gtggttattccacattactgagtcaagcatacacacaccacaggattgct
aagtagtgccacttatgaaaaacatccataattgtttaaataacataatc
atctattctctacccatgagctgagtttcctaataatattttcaccacta
atcttcagctaaatcaactagggaatgtccccatgataaaacacacttga
cgtctgtctctactgccaagctgtattaaatgcaaacgacataggcatat
gtaagtatttatgctgctctgtatctgaatttaaaaaaaaaaatgagaag
agctctcgaagtaaagaagagtaaaaatgttcacctgaagacattgtgca
agccagatttactgggagaggcaaaatctctcatcatgtacctccttaca
taatcataataacatgaaattatataaatatatatcatagactttttcta
cttcttaacagaatactggctgaccactggcctaaatatttccaccactg
acattcctctaccacagggcaattaagtgattctctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43410816_43411182
seq2: B6Ng01-016G08.b_44_410

seq1  GAATTCTCTGGAAAGCTCTTTTGCAACATTTATACTTACACCTTTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAAAGCTCTTTTGCAACATTTATACTTACACCTTTTCAGA  50

seq1  TAATCAGTGTGAATCTCTAAAAGGTATTCTATTGCTGCTACTCTGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTGTGAATCTCTAAAAGGTATTCTATTGCTGCTACTCTGAGGAT  100

seq1  GAAATTTCCAGGGTTTGGACATGCCTCAATTGCCTCTTGCCCCAGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCCAGGGTTTGGACATGCCTCAATTGCCTCTTGCCCCAGGCCTG  150

seq1  CTTCCCTCAGCCCCTAGCTCTCTGGCCTCACAAAAATCAATAGTCTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCAGCCCCTAGCTCTCTGGCCTCACAAAAATCAATAGTCTATAA  200

seq1  ATCATTAAGAGACTCTTGGAGTCTCCTGACAAACACAGCCAAAGGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAGAGACTCTTGGAGTCTCCTGACAAACACAGCCAAAGGATGTC  250

seq1  TCCCATGCCTTATATTGGGACTTTTTATTTGATAGCCTATGGCTCTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCCTTATATTGGGACTTTTTATTTGATAGCCTATGGCTCTTGGG  300

seq1  GAAGACTTTTTTCCCAGTAGCATCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTTTTTCCCAGTAGCATCTCTCTCTCTCTCTCTCTCTCTCTCTC  350

seq1  TCTCTCTCTCTCTCTCT  367
      |||||||||||||||||
seq2  TCTCTCTCTCTCTCTCT  367

seq1: chr14_43701428_43702570
seq2: B6Ng01-016G08.g_67_1205 (reverse)

seq1  TGCAGAGAAATCAACTTAAATGCCCTGTGGTTGAGGAATGTCAGTTGGTG  50
      ||||||| |||| |||||| ||||||||||| |||||||||||| |||||
seq2  TGCAGAG-AATC-ACTTAATTGCCCTGTGGTAGAGGAATGTCAG-TGGTG  47

seq1  GAAATATTTAGGCAAGT-GTCAGCCAGTATTCTGTTAAG-AGTAG-AAAA  97
      ||||||||||||| ||| ||||||||||||||||||||| ||||| ||||
seq2  GAAATATTTAGGCCAGTGGTCAGCCAGTATTCTGTTAAGAAGTAGAAAAA  97

seq1  GTCTTATTGATATATATTTATATAATTTCAATGTTATTATGATTATGTAA  147
      ||||   |||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCT--ATGATATATATTTATATAATTTC-ATGTTATTATGATTATGTAA  144

seq1  GGAGGTACATGATGAGAGATTTTGCCTCTCCCAGTAAATCTTGGCTTGCA  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGGTACATGATGAGAGATTTTGCCTCTCCCAGTAAATC-TGGCTTGCA  193

seq1  CAATGTCTTCAGGTGAACATTTTTACTCTTCTTTACTTCGAGAGCTCTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTCAGGTGAACATTTTTACTCTTCTTTACTTCGAGAGCTCTTC  243

seq1  TCA-TTTTTTTTTTAAATTCAGATACAGAGCAGCATAAATACTTACATTA  296
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCATTTTTTTTTTTAAATTCAGATACAGAGCAGCATAAATACTTACA-TA  292

seq1  TGCCTATGTCGTTTGCATTTAATACAGCTTGGCAGTAGAGACAGACGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGTCGTTTGCATTTAATACAGCTTGGCAGTAGAGACAGACGTCA  342

seq1  AGTGTGTTTTATCATGGGGACATTCCCTAGTTGATTTAGCTGAAGATTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTTATCATGGGGACATTCCCTAGTTGATTTAGCTGAAGATTAG  392

seq1  TGGTGAAAATATTATTAGGAAACTCAGCTCATGGGTAGAGAATAGATGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAATATTATTAGGAAACTCAGCTCATGGGTAGAGAATAGATGAT  442

seq1  TATGTTATTTAAACAATTATGGATGTTTTTCATAAGTGGCACTACTTAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATTTAAACAATTATGGATGTTTTTCATAAGTGGCACTACTTAGC  492

seq1  AATCCTGTGGTGTGTGTATGCTTGACTCAGTAATGTGGAATAACCACAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTGGTGTGTGTATGCTTGACTCAGTAATGTGGAATAACCACAGG  542

seq1  CCCACTGAAATATGTCTGGTGGAGACGAAGATTCCTGTCATTCTGGTAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAAATATGTCTGGTGGAGACGAAGATTCCTGTCATTCTGGTAGC  592

seq1  TAAGAGAATTTGACCATATGCATTTCTTTCTCAGGAGTGTGACAGTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAATTTGACCATATGCATTTCTTTCTCAGGAGTGTGACAGTGTGT  642

seq1  CTAAGAGGCATACTTCTCTTTCAGCAGATTTGGGTCATCCCCTCCTTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGCATACTTCTCTTTCAGCAGATTTGGGTCATCCCCTCCTTCTC  692

seq1  AACCTTGATTTTGCACTGGGATGCCAGAATTTCCTTGACTTCTGTGTTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGATTTTGCACTGGGATGCCAGAATTTCCTTGACTTCTGTGTTCC  742

seq1  TTCTATCTTAAAGGGATCAGTTTTTTTGTCTTTGATAGGAGGTATATGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTAAAGGGATCAGTTTTTTTGTCTTTGATAGGAGGTATATGTA  792

seq1  TTTTTCCTGGTGTTTCATATAGTTGCTTTTATTTTTGCTTCATGTGTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTGGTGTTTCATATAGTTGCTTTTATTTTTGCTTCATGTGTCAT  842

seq1  GAAACATTCTTTGTTGGTTTTCTCCCTATTTGTATTTCTGATTAGAAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTCTTTGTTGGTTTTCTCCCTATTTGTATTTCTGATTAGAAAAT  892

seq1  GAATAAAAATAAATTATAAAAAAAGAGTAGAAAAGTCACTCAGAAATATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAATAAATTATAAAAAAAGAGTAGAAAAGTCACTCAGAAATATA  942

seq1  AATTCACACCTGAATGGCCTCCTGACCCTAGCTTTATTGATTGTTATCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACACCTGAATGGCCTCCTGACCCTAGCTTTATTGATTGTTATCTC  992

seq1  ATCAGTTTCCCAGCTCCCCTCCCTAACCTAATTGAGTATAGATTTTAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTCCCAGCTCCCCTCCCTAACCTAATTGAGTATAGATTTTAAAT  1042

seq1  ACCCATGAGCTTCAATTACTTCTGTCCCCTTTCTTCTCTGTAAAAGGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGAGCTTCAATTACTTCTGTCCCCTTTCTTCTCTGTAAAAGGTAA  1092

seq1  TGGGACTCAAAAGATTACAGAACAATTCCTCACTATAAAAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCAAAAGATTACAGAACAATTCCTCACTATAAAAAGAATTC  1139