BAC Information

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BAC

Clone NameB6Ng01-016I05
Chromosome14 (Build37)
Map Location 46,980,252 - 47,149,097
singlet/doubletdoublet
Overlap geneLOC100041724, Bmp4, LOC100041732
Upstream geneStyx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
Downstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016I05.bB6Ng01-016I05.g
ACCDH850454DH850455
length8171,076
definitionDH850454|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I05, 5' end.DH850455|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,980,252 - 46,981,067)(47,148,018 - 47,149,097)
sequence
gaattctttattgggaaaatagttatagaaataattctatgatgaataat
agtggcggttaatccgggattttcaggctacatcatcagggccctcgacc
tagataatattcagggtgagataggaaaatttgcaggtgctacctgaaga
aacttcgaatgaaggactggaggtgtggctgagcacttgcctaggatgtg
tcaagttaggagttctgcactagcaaaaagaaaggagaaagagctgaagg
aagaaaacaacaataactacaacaacaaaagtttaaggggctggagagat
ggctcagcagttaagagcactgactgctcttccagaggtcctgagttcat
ggttccagtaaccatgtggtggctcttctggtgtgtctgaagacagtgta
ctcattaaaataaataaatacatgcatcttttttaaaaaaaaaaaagttt
agaaaggctgagtataattacatccaaggccaagaaaattatgtgtaaaa
aagactttaaaaccaaaagaaccttacttaaggggcccagcgagatctga
ccatagaaaggaacagaaggggaaaagttactaagaatataactacagag
aaaagaggaccaggtatcacaagggcttggaacatttattccaagtacac
tgagagccattcaaatggtatatgtgaaggtttgatgtacttggatatgc
ccctttaaaactcgtcctgaagacagcgaaagaacagacagggatgtaga
aaggccaggagaaaaagagccaatacttagatcaatgtgctgcctatggt
ggtggtgggtggggggg
gaattcagtcctgtcaccagatctcttaagagggtaattcagagggaaat
gggagctcccttgaaactcatcacttagagatgctttatctgtggaaagt
aggaggaaaatgtatcagccacaaacctcccttggaatgtgaaggggttt
aaccccagagctgtatacagaatgccagcttggaatctggggctcccaga
gctgccttgtgagcaggacaggatgagcactgatagacagcgtgttcagc
atatggtaggaggccaaagagcatctggtcaacctcgcccttcttccatt
tctgggaagtaagattgagacgtatgcttcaactgagctctctatggtgg
ctgagcatcttatagagagatgggtaacatattcagataattagactaag
taagaccattttgctgaagggaaactgatcattttctacctcaataggtg
tttatgcttagttactgttaagctcagtcctagcggagtgagctggccat
acagttgatttgagtggcccttgtgaaatgatgtgttttctagtctttat
aaaattaatttcttgtatttctttccttccaggaacttgtgtatgagaga
tcagggcctcttccaggctgtgggtaggactggcatgactgagaaccctg
ccttcagagtcctctgaccctgctcagttcctacagctatctccaagctc
ttgtgctatgaaacccctttgtttctctatctgaactgtggcctctccca
tcaacatcttctgactctctgttttgttacctattctttaaaagaatcta
aatcttaaccaattctaatgaagaactttagtcttactgggtttttttgc
tttgttttgttttctactcagttatttaaaatgatgtatatccaaagttc
agtctggcttcttaggtcaaaagtgtaggattctgcaagtagctaaagag
ggctataactgaaaacccagcaggaatgcctcctgaaattaaaacagaca
gcaacattcaaaacaatgagctcctagggtccacaaaggaagtggaattt
gaaggtaaaggggactgacctcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46980252_46981067
seq2: B6Ng01-016I05.b_48_864

seq1  GAATTCTTTATTGGGAAAATAGTTATAGAAATAATTCTATGATGAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTGGGAAAATAGTTATAGAAATAATTCTATGATGAATAAT  50

seq1  AGTGGCGGTTAATCCGGGATTTTCAGGCTACATCATCAGGGCCCTCGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCGGTTAATCCGGGATTTTCAGGCTACATCATCAGGGCCCTCGACC  100

seq1  TAGATAATATTCAGGGTGAGATAGGAAAATTTGCAGGTGCTACCTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATATTCAGGGTGAGATAGGAAAATTTGCAGGTGCTACCTGAAGA  150

seq1  AACTTCGAATGAAGGACTGGAGGTGTGGCTGAGCACTTGCCTAGGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGAATGAAGGACTGGAGGTGTGGCTGAGCACTTGCCTAGGATGTG  200

seq1  TCAAGTTAGGAGTTCTGCACTAGCAAAAAGAAAGGAGAAAGAGCTGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAGGAGTTCTGCACTAGCAAAAAGAAAGGAGAAAGAGCTGAAGG  250

seq1  AAGAAAACAACAATAACTACAACAACAAAAGTTTAAGGGGCTGGAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAACAATAACTACAACAACAAAAGTTTAAGGGGCTGGAGAGAT  300

seq1  GGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAT  350

seq1  GGTTCCAGTAACCATGTGGTGGCTCTTCTGGTGTGTCTGAAGACAGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGTAACCATGTGGTGGCTCTTCTGGTGTGTCTGAAGACAGTGTA  400

seq1  CTCATTAAAATAAATAAATACATGCATCTTTTTTAAAAAAAAAAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAATAAATAAATACATGCATCTTTTTTAAAAAAAAAAAAGTTT  450

seq1  AGAAAGGCTGAGTATAATTACATCCAAGGCCAAGAAAATTATGTGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCTGAGTATAATTACATCCAAGGCCAAGAAAATTATGTGTAAAA  500

seq1  AAGACTTTAAAACCAAAAGAACCTTACTTAAGGGGCCCAGCGAGATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTAAAACCAAAAGAACCTTACTTAAGGGGCCCAGCGAGATCTGA  550

seq1  CCATAGAAAGGAACAGAAGGGGAAAAGTTACTAAGAATATAACTACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAAGGAACAGAAGGGGAAAAGTTACTAAGAATATAACTACAGAG  600

seq1  AAAAGAGGACCAGGTATCACAAGGGCTTGGAACATTTATTCCAAGTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGACCAGGTATCACAAGGGCTTGGAACATTTATTCCAAGTACAC  650

seq1  TGAGAGCCATTCAAATGGTATATGTGAAGGTTTGATGTACTTGGATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCATTCAAATGGTATATGTGAAGGTTTGATGTACTTGGATATGC  700

seq1  CCCTTTAAAACTCGTCCTGAAGACAGCGAAAGAACAGACAGGGATGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAAACTCGTCCTGAAGACAGCGAAAGAACAGACAGGGATGTAGA  750

seq1  AAGGCCAGGAGAAAAAGAGCCAATACTTAGATCAATGTGCTGCCTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGGAGAAAAAGAGCCAATACTTAGATCAATGTGCTGCCTATGGT  800

seq1  GGTGGT-GGTGGGGGGG  816
      |||||| ||||||||||
seq2  GGTGGTGGGTGGGGGGG  817

seq1: chr14_47148018_47149097
seq2: B6Ng01-016I05.g_70_1145 (reverse)

seq1  GTTTGAAGTCAGTCCCCTTTACCTCCAACTCCACCTTCCTTTGTGGACCC  50
      |||||| ||||||||||||||||| ||| | |  ||||||||||||| ||
seq2  GTTTGAGGTCAGTCCCCTTTACCTTCAAATTCCACTTCCTTTGTGGA-CC  49

seq1  CTAGGAGCTCATTGTTTTGAATGTTGCTTGTCTGTTTTAACTTTCAGGA-  99
      ||||||||||||||||||||||||||| |||||||||||| |||||||| 
seq2  CTAGGAGCTCATTGTTTTGAATGTTGC-TGTCTGTTTTAA-TTTCAGGAG  97

seq1  GCATTCCTGCTGTG-TCTCAG-TATAGCCCTTCTTTTAGCTACTTGCAGA  147
      |||||||||||| | | |||| |||||||||   ||||||||||||||||
seq2  GCATTCCTGCTGGGTTTTCAGTTATAGCCCT--CTTTAGCTACTTGCAGA  145

seq1  ATCCTACACTTTTGACCTAAGAAGCCAGACTGAACTTTGGATATACATCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCTACACTTTTGACCTAAGAAGCCAGACTGAACTTTGGATATACATC-  194

seq1  ATTTTAAATAACTGAGTAGAAAAACAAAACAAAGCAAAAAAACCCAGTAA  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTTAAATAACTGAGTAG-AAAACAAAACAAAGCAAAAAAACCCAGTAA  243

seq1  GACTAAAGTTCTTCATTAGAATTGGTTAAGATTTAGATTCTTTTAAAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGTTCTTCATTAGAATTGGTTAAGATTTAGATTCTTTTAAAGAA  293

seq1  TAGGTAACAAAACAGAGAGTCAGAAGATGTTGATGGGAGAGGCCACAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACAAAACAGAGAGTCAGAAGATGTTGATGGGAGAGGCCACAGTT  343

seq1  CAGATAGAGAAACAAAGGGGTTTCATAGCACAAGAGCTTGGAGATAGCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAGAAACAAAGGGGTTTCATAGCACAAGAGCTTGGAGATAGCTG  393

seq1  TAGGAACTGAGCAGGGTCAGAGGACTCTGAAGGCAGGGTTCTCAGTCATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTGAGCAGGGTCAGAGGACTCTGAAGGCAGGGTTCTCAGTCATG  443

seq1  CCAGTCCTACCCACAGCCTGGAAGAGGCCCTGATCTCTCATACACAAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTACCCACAGCCTGGAAGAGGCCCTGATCTCTCATACACAAGTT  493

seq1  CCTGGAAGGAAAGAAATACAAGAAATTAATTTTATAAAGACTAGAAAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGGAAAGAAATACAAGAAATTAATTTTATAAAGACTAGAAAACA  543

seq1  CATCATTTCACAAGGGCCACTCAAATCAACTGTATGGCCAGCTCACTCCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTCACAAGGGCCACTCAAATCAACTGTATGGCCAGCTCACTCCG  593

seq1  CTAGGACTGAGCTTAACAGTAACTAAGCATAAACACCTATTGAGGTAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTGAGCTTAACAGTAACTAAGCATAAACACCTATTGAGGTAGAA  643

seq1  AATGATCAGTTTCCCTTCAGCAAAATGGTCTTACTTAGTCTAATTATCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCAGTTTCCCTTCAGCAAAATGGTCTTACTTAGTCTAATTATCTG  693

seq1  AATATGTTACCCATCTCTCTATAAGATGCTCAGCCACCATAGAGAGCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTACCCATCTCTCTATAAGATGCTCAGCCACCATAGAGAGCTCA  743

seq1  GTTGAAGCATACGTCTCAATCTTACTTCCCAGAAATGGAAGAAGGGCGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCATACGTCTCAATCTTACTTCCCAGAAATGGAAGAAGGGCGAG  793

seq1  GTTGACCAGATGCTCTTTGGCCTCCTACCATATGCTGAACACGCTGTCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAGATGCTCTTTGGCCTCCTACCATATGCTGAACACGCTGTCTA  843

seq1  TCAGTGCTCATCCTGTCCTGCTCACAAGGCAGCTCTGGGAGCCCCAGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCATCCTGTCCTGCTCACAAGGCAGCTCTGGGAGCCCCAGATT  893

seq1  CCAAGCTGGCATTCTGTATACAGCTCTGGGGTTAAACCCCTTCACATTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGGCATTCTGTATACAGCTCTGGGGTTAAACCCCTTCACATTCC  943

seq1  AAGGGAGGTTTGTGGCTGATACATTTTCCTCCTACTTTCCACAGATAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGTTTGTGGCTGATACATTTTCCTCCTACTTTCCACAGATAAAG  993

seq1  CATCTCTAAGTGATGAGTTTCAAGGGAGCTCCCATTTCCCTCTGAATTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTAAGTGATGAGTTTCAAGGGAGCTCCCATTTCCCTCTGAATTAC  1043

seq1  CCTCTTAAGAGATCTGGTGACAGGACTGAATTC  1080
      |||||||||||||||||||||||||||||||||
seq2  CCTCTTAAGAGATCTGGTGACAGGACTGAATTC  1076