BAC Information

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BAC

Clone NameB6Ng01-017E17
Chromosome14 (Build37)10 (Build37)
Map Location 94,655,173 - 94,655,319102,418,043 - 102,418,832
singlet/doubletsingletsinglet
Overlap geneLOC100043356
Upstream genePcdh9
Downstream geneLOC100043783, LOC677613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017E17.bB6Ng01-017E17.g
ACCDH851020DH851021
length853795
definitionDH851020|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E17, 5' end.DH851021|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,655,173 - 94,655,319)(102,418,043 - 102,418,832)
sequence
gaattctcaggagaggagtttaattaaatcatcaaacttagggctgggtg
ttcctccttcctttctgctctctccctccctcccttcatcccccctctta
tatttgctctctctgatacaggggaaagcttctttggtgagggctaagca
agatactgatctatgagtataaaaggatgtcagtaggagtcactttatca
ctatcagagtggtcgaagctactttagcatgacatcaccatagtgttaag
tttgtgttgacattatacctttttttcctttctcccaaactccacactcc
ctctctgtaagccatccactgatttttttctctttctttgtaattgtgac
atcttagaaatgcccatggaaggagttacagagacaaagtttggagctaa
gacaaaaggatggaccatccagggactacccaacccagggatccatccca
taaccagccaccaaatgcagacactattgcatacaccagcaagattttgc
tgaaaggaccctgatagagctgtttcgtttgacgctaggccattgcctgg
caaatacagaagtggatgctcacagtcatttatagaatggaacacaggtc
ccccaatggaggagctagagaaagtacccaaggagctgtgaaggggtctg
caaccctataggtggaacaacaatatgaactatccagtacccccagagct
tctgtctctagctgcatatgtatcagaagatggcctagtcggccatcatt
aggaagagaggccccttggtctttcaaactttatatgccctttatatgta
ctatatagtacagggaaacaccaggggccaaaaagtgggagtgggcgggt
agg
gaattcaccatttagcatctagttgcctttaacacacatgtatcctgggg
tcttggaattcaccatttagcatctagttgcctttagcacacatgagacc
tgttttattaacatgcgatattgtttcaaagtttctatgttcacgttcct
accttttccatggcttttgaaatctcaattccccatacacttatggggtt
agaccatctcaacattaagtatttaagaaataattttgaagttcactaac
ctgggatgttcaacagatattctgcctctttccttcacttcagcaactct
cacatgacaaaaatgtacataaagaattgtagatatttaacataagttca
aacagattgttcatatattcaggagcataatacatttctctaataagttg
caaaaatgtcaacattgaaggaaactgtataaattagatactaggtttat
agtagggaaagactcattaggtagagaattaggaatgagttatactttca
tgtttgaaatttgtcatcttgtctagatacaaaatgcaacatagacccaa
tatagacaactgtgatgttgatcaccactgctccagtgcaatctagatat
gtgagggactagatgaggcagtttatcagatactgatatttagtgatatt
ttttgaaagaaataaaaacaatgttttctataaaaaatgtcaatcaagta
tattttctaatatcaacattacgtttcttcaaaattatgataattaaaat
gttttattttatttgtaaagcctatataccatttgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94655173_94655319
seq2: B6Ng01-017E17.b_658_832 (reverse)

seq1  GGCATATAAAGTTTGCAAGACCAACGGGCCTCTCTTTCCACTGATGGTCC  50
      ||||||||||||||| |||||||| ||||||||||| | | |||||| | 
seq2  GGCATATAAAGTTTGAAAGACCAAGGGGCCTCTCTTCCTAATGATGGCCG  50

seq1  ACTAGGCCATCTTCTGATACATATGCAGCTAGAAACATGATCTCCGGGGG  100
      ||||||||||||||||||||||||||||||||| |||  | |||      
seq2  ACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAGAAGCTC------  94

seq1  GGGGGGGGTACTGGTTAGTTCATATTG-----------------------  127
         ||||||||||| ||||||||||||                       
seq2  --TGGGGGTACTGGATAGTTCATATTGTTGTTCCACCTATAGGGTTGCAG  142

seq1  -------------TCCTTGGGTACTTTCTCTAG  147
                   ||||||||||||||||||||
seq2  ACCCCTTCACAGCTCCTTGGGTACTTTCTCTAG  175

seq1: chr10_102418043_102418832
seq2: B6Ng01-017E17.g_67_861

seq1  GAATTCACCATTTAGCATCTAGTTGCCTTTAACACACATGTATCCTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTAGCATCTAGTTGCCTTTAACACACATGTATCCTGGGG  50

seq1  TCTTGGAATTCACCATTTAGCATCTAGTTGCCTTTAGCACACATGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAATTCACCATTTAGCATCTAGTTGCCTTTAGCACACATGAGACC  100

seq1  TGTTTTATTAACATGCGATATTGTTTCAAAGTTTCTATGTTCACGTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTAACATGCGATATTGTTTCAAAGTTTCTATGTTCACGTTCCT  150

seq1  ACCTTTTCCATGGCTTTTGAAATCTCAATTCCCCATACACTTATGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCCATGGCTTTTGAAATCTCAATTCCCCATACACTTATGGGGTT  200

seq1  AGACCATCTCAACATTAAGTATTTAAGAAATAATTTTGAAGTTCACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATCTCAACATTAAGTATTTAAGAAATAATTTTGAAGTTCACTAAC  250

seq1  CTGGGATGTTCAACAGATATTCTGCCTCTTTCCTTCACTTCAGCAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTTCAACAGATATTCTGCCTCTTTCCTTCACTTCAGCAACTCT  300

seq1  CACATGACAAAAATGTACATAAAGAATTGTAGATATTTAACATAAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACAAAAATGTACATAAAGAATTGTAGATATTTAACATAAGTTCA  350

seq1  AACAGATTGTTCATATATTCAGGAGCATAATACATTTCTCTAATAAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTGTTCATATATTCAGGAGCATAATACATTTCTCTAATAAGTTG  400

seq1  CAAAAATGTCAACATTGAAGGAAACTGTATAAATTAGATACTAGGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTCAACATTGAAGGAAACTGTATAAATTAGATACTAGGTTTAT  450

seq1  AGTAGGGAAAGACTCATTAGGTAGAGAATTAGGAATGAGTTATACTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAAAGACTCATTAGGTAGAGAATTAGGAATGAGTTATACTTTCA  500

seq1  TGTTTGAAATTTGTCATCTTGTCTAGATACAAAATGCAACATAGACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAATTTGTCATCTTGTCTAGATACAAAATGCAACATAGACCCAA  550

seq1  TATAGACAACTGTGATGTTGATCACCACTGCTCCAGTGCAATCTAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAACTGTGATGTTGATCACCACTGCTCCAGTGCAATCTAGATAT  600

seq1  GTGAGGGACTAGATGAGGCAGTTTATCAGATACTGATATTTAGTGATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGACTAGATGAGGCAGTTTATCAGATACTGATATTTAGTGATATT  650

seq1  TTTTGAAAGAAATAAAAACAATGTTTTCTAT-AAAAATGTCAATCAAGTA  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTGAAAGAAATAAAAACAATGTTTTCTATAAAAAATGTCAATCAAGTA  700

seq1  TA-TTTCTAATATCAACATTACG-TTCTTCAAAATTATGATAA-TAAAAT  746
      || |||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TATTTTCTAATATCAACATTACGTTTCTTCAAAATTATGATAATTAAAAT  750

seq1  GTTTTATTTTATTTGTAAAGCCTATATA-CATTTGTGTGTGTGTG  790
      |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTATTTTATTTGTAAAGCCTATATACCATTTGTGTGTGTGTG  795