BAC Information

Click to search

BAC

Clone NameB6Ng01-017F07
Chromosome14 (Build37)
Map Location 49,115,438 - 49,116,489
singlet/doubletsinglet
Overlap gene6720456H20Rik
Upstream geneFbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831
Downstream gene4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F07.b
ACCDH851046
length1,057
definitionDH851046|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F07, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcttattctgactaggtctctagaaaaaaaaatggaattaaga
tgaaagtgccttagttctgtatagtcagaaactactcttgttaactgaaa
taggattacttggggtggacaattacacttgagaacagacttggcttttc
atggacatgattataagttgatagaagtcgtacagcgggctctgccttct
cctcgagtttctgttagcaccctctaaagaagctgagaggatcctgggcg
agcatggtggtgcacgcctttcctcaggaagcagatgcaggcagcatggt
ccacagagcaagttccaggacagccagagctatgtggagaaaccctgtcc
cagacagacagacagacagacagacagacagacagacagaccactgagct
caaaatctgttctgcttaactgtgtgccttctcagagccaagtgagaaaa
tctgaaacactgtacacatatggagggagaggaaaacatagacttatgtt
ttaattagctgaaaaatctttttattcagcatttgtgaccaaagaaccaa
taacgtgattgatcagtttgcacgaaatcttctggactccatgcctcagg
atgccatcatcctactcagaggagacctgcctggaaacgctctccgttac
ttgcattactgcgagggcttgagaccagatgtttcactggtggatcaaga
agtaagtatatgagagatgtcctcagcacacggcaacttttaaccacatc
gttcttggaggcatatgcctgtggcttgagtctggacaaacagtatgatc
ccatgtagataaacagataagcactttttttaaaaatatggttgggtatg
cttttcataatcattcttttctgtgggtttctgtggagaaaaggaagttg
atgtttgcttttagcatggtctcacagtatagaccaaggtagccctggag
tccaccatgtccccttgggtttcacatggtgctaggattcccaatggtcc
accaaccatacctctggatgagtgatatatcatagttctggtttactttg
gggtgac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49115438_49116489
seq2: B6Ng01-017F07.b_45_1101

seq1  GAATTCCTCTTATTCTGACTAGGTCTCTAGAAAAAAAAATGGAATTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTATTCTGACTAGGTCTCTAGAAAAAAAAATGGAATTAAGA  50

seq1  TGAAAGTGCCTTAGTTCTGTATAGTCAGAAACTACTCTTGTTAACTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGCCTTAGTTCTGTATAGTCAGAAACTACTCTTGTTAACTGAAA  100

seq1  TAGGATTACTTGGGGTGGACAATTACACTTGAGAACAGACTTGGCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTACTTGGGGTGGACAATTACACTTGAGAACAGACTTGGCTTTTC  150

seq1  ATGGACATGATTATAAGTTGATAGAAGTCGTACAGCGGGCTCTGCCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATGATTATAAGTTGATAGAAGTCGTACAGCGGGCTCTGCCTTCT  200

seq1  CCTCGAGTTTCTGTTAGCACCCTCTAAAGAAGCTGAGAGGATCCTGGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGTTTCTGTTAGCACCCTCTAAAGAAGCTGAGAGGATCCTGGGCG  250

seq1  AGCATGGTGGTGCACGCCTTTCCTCAGGAAGCAGATGCAGGCAGCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTGGTGCACGCCTTTCCTCAGGAAGCAGATGCAGGCAGCATGGT  300

seq1  CCACAGAGCAAGTTCCAGGACAGCCAGAGCTATGTGGAGAAACCCTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCAAGTTCCAGGACAGCCAGAGCTATGTGGAGAAACCCTGTCC  350

seq1  CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACCACTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACCACTGAGCT  400

seq1  CAAAATCTGTTCTGCTTAACTGTGTGCCTTCTCAGAGCCAAGTGAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTGTTCTGCTTAACTGTGTGCCTTCTCAGAGCCAAGTGAGAAAA  450

seq1  TCTGAAACACTGTACACATATGGAGGGAGAGGAAAACATAGACTTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACACTGTACACATATGGAGGGAGAGGAAAACATAGACTTATGTT  500

seq1  TTAATTAGCTGAAAAATCTTTTTATTCAGCATTTGTGACCAAAGAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGCTGAAAAATCTTTTTATTCAGCATTTGTGACCAAAGAACCAA  550

seq1  TAACGTGATTGATCAGTTTGCACGAAATCTTCTGGACTCCATGCCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTGATTGATCAGTTTGCACGAAATCTTCTGGACTCCATGCCTCAGG  600

seq1  ATGCCATCATCCTACTCAGAGGAGACCTGCCTGGAAACGCTCTCCGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCATCCTACTCAGAGGAGACCTGCCTGGAAACGCTCTCCGTTAC  650

seq1  TTGCATTACTGCGAGGGCTTGAGACCAGATGTTTCACTGGTGGATCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTACTGCGAGGGCTTGAGACCAGATGTTTCACTGGTGGATCAAGA  700

seq1  AGTAAGTATATGAGAGATGTCCTCAGCACACGGCAACTTTTAACCACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATATGAGAGATGTCCTCAGCACACGGCAACTTTTAACCACATC  750

seq1  GTTCTTGGAGGCATATGCCTGTGGCTTGAGTCTGGACAAACAGTATGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGAGGCATATGCCTGTGGCTTGAGTCTGGACAAACAGTATGATC  800

seq1  CCATGTAGATAAACAGATAAGCAC-TTTTTTAAAAATATGGTTGGGTATG  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATGTAGATAAACAGATAAGCACTTTTTTTAAAAATATGGTTGGGTATG  850

seq1  CTTTTCATAATCATTCTTTTCTGTGGGTTTCTGTGGAG-AAAGGAAGTTG  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTTTCATAATCATTCTTTTCTGTGGGTTTCTGTGGAGAAAAGGAAGTTG  900

seq1  ATGTTTGCTTTTAGCAGGGTCTCACAGTATAGACCAAGGTAG-CCTGGAG  947
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  ATGTTTGCTTTTAGCATGGTCTCACAGTATAGACCAAGGTAGCCCTGGAG  950

seq1  TCCACCATAGTCCCCTT-GGTTTCACAT-GTGCTAGGATTCCCAATGTAC  995
      |||||||| |||||||| |||||||||| ||||||||||||||||||  |
seq2  TCCACCAT-GTCCCCTTGGGTTTCACATGGTGCTAGGATTCCCAATGGTC  999

seq1  CACCAACCATACACTCTG--AGAGTGGATATATCATAGTTCT-GTTTACT  1042
      |||||||||||| |||||   |||| |||||||||||||||| |||||||
seq2  CACCAACCATAC-CTCTGGATGAGT-GATATATCATAGTTCTGGTTTACT  1047

seq1  TTGGGTTGAC  1052
      ||||| ||||
seq2  TTGGGGTGAC  1057