BAC Information

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BAC

Clone NameB6Ng01-017J11
Chromosome14 (Build37)
Map Location 110,657,554 - 110,787,837
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J11.bB6Ng01-017J11.g
ACCDH851234DH851235
length1,0091,095
definitionDH851234|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J11, 5' end.DH851235|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,657,554 - 110,658,401)(110,786,742 - 110,787,837)
sequence
gaattctctcccacaacaaatataatcctaaattatattgtatctaaaat
caaattttattataacaatactatgttaaagttcaatacataaaagccaa
gtttgaaaaccatggatgttggtctggagagataattcagtaattacgta
ctggctacttttccagaagatctgggttcaattcccagcactgatatgac
agccaacaccagataattctagtcccaagatatttgacacactctttcag
acatatgtatatgtgaaacatcaatgtacattaaaaatattaatatttaa
aagtttgaaatataaatattaggatttctaaatgaagctgtttaccacta
ttgttttataagatattttcttaatttatgtttcaaatgttattcccttt
cctggtttcctctccgatctgtctcaccctgcttctataagggtgttccc
ctacccacacactccctttttcccatcctggcattcccatattcggaggc
atccagatctcacaggaaaaagagcctctcctcccaatgatgtctgacaa
gaccatcatctgctacaaatgcaggtggagccaatggtatctccatgggt
attctctgaagatctcagaatatggaaagatctcccatgctcaaggattg
acaggattaatatagcaaaaatgaccatcttgacgaaaaaaaatccatag
attcaatataatccccatcaaaattccaactcaaaacttcatccagttag
aaagagcaatttgaaaattcatctggaataacaaaataaccgggatagtg
aaaaatattctcaacaataaaataacttccacaggaatcgctatccctgg
cctcaagctgtattacagagcaatagtgataaaaactgtatggtattggt
acagagtagagaggaaggtcaagggaacagaattgaagacacagaaatga
aaccacacgtttggtatgtgatcattgacaaaggagcttaagccatccag
gtgggaaaa
gaattctggtatgacagaagaaaaattttccattaagacttggtgtggaa
ggttttcttgatgttccattactcttacaacactattggttcatctaatc
actatgatatttcaaaattaatcctgaatggttacctgccaagggagttc
tttaccacttttccaattgtttgacatgactcatgcgtaaagacttctac
cagtgtgaccctgaaatagaatggccgggttgattattttcacttattcc
tttcagggaatattttctgaatatatccagcacttttagttgataaaaat
cataattaaaaaaccattgcttcacacaagaattaaaaagcaacataaag
atttggtaaatcaaattcatttgcttatctaaggagaaatttttctgaaa
cacatgtaaatgcagccaaatcatacaatgtataatcatagaagcaacct
tattaacaaggtgttaggttttgacagagtgactcaccacaaacatcaga
taacagttggccatttggttttggaatgagcatggaatcattttcaaagt
ctattatacctgataaaacatgggctcccatgcatattagacaaaacaaa
accaatattgatgtatatttaaattacttgatgtttaatattatttgtgt
gcagacacactttcatattttatttcatttctttccataaagactcacct
aagtgaataacacagcaatcatctgaggtttagcccatccccaagtgtct
attcagtaatgaatatcatctctggaaacaaaacaaaaagtacagttata
taattgcttggtcagaattaggaagtgtcagaagaattctaccttcttaa
aacctgaactatgatatgtatctttctcccacagtgatgattattttttt
aagattttatttattgtttatttattttatgtatgtgagtacactgtagc
tattcttcagaacacatgagaattgcatcaagatccactactatggtttg
aattccatggtgattgcaaaagaattgaactcaggatttctgaagagcaa
tcagttccctatcctgaaggcttctctctccaatttttacttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110657554_110658401
seq2: B6Ng01-017J11.b_46_893

seq1  GAATTCTCTCCCACAACAAATATAATCCTAAATTATATTGTATCTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCACAACAAATATAATCCTAAATTATATTGTATCTAAAAT  50

seq1  CAAATTTTATTATAACAATACTATGTTAAAGTTCAATACATAAAAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTATTATAACAATACTATGTTAAAGTTCAATACATAAAAGCCAA  100

seq1  GTTTGAAAACCATGGATGTTGGTCTGGAGAGATAATTCAGTAATTACGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAACCATGGATGTTGGTCTGGAGAGATAATTCAGTAATTACGTA  150

seq1  CTGGCTACTTTTCCAGAAGATCTGGGTTCAATTCCCAGCACTGATATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACTTTTCCAGAAGATCTGGGTTCAATTCCCAGCACTGATATGAC  200

seq1  AGCCAACACCAGATAATTCTAGTCCCAAGATATTTGACACACTCTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACACCAGATAATTCTAGTCCCAAGATATTTGACACACTCTTTCAG  250

seq1  ACATATGTATATGTGAAACATCAATGTACATTAAAAATATTAATATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTATATGTGAAACATCAATGTACATTAAAAATATTAATATTTAA  300

seq1  AAGTTTGAAATATAAATATTAGGATTTCTAAATGAAGCTGTTTACCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAAATATAAATATTAGGATTTCTAAATGAAGCTGTTTACCACTA  350

seq1  TTGTTTTATAAGATATTTTCTTAATTTATGTTTCAAATGTTATTCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATAAGATATTTTCTTAATTTATGTTTCAAATGTTATTCCCTTT  400

seq1  CCTGGTTTCCTCTCCGATCTGTCTCACCCTGCTTCTATAAGGGTGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCCTCTCCGATCTGTCTCACCCTGCTTCTATAAGGGTGTTCCC  450

seq1  CTACCCACACACTCCCTTTTTCCCATCCTGGCATTCCCATATTCGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACACACTCCCTTTTTCCCATCCTGGCATTCCCATATTCGGAGGC  500

seq1  ATCCAGATCTCACAGGAAAAAGAGCCTCTCCTCCCAATGATGTCTGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATCTCACAGGAAAAAGAGCCTCTCCTCCCAATGATGTCTGACAA  550

seq1  GACCATCATCTGCTACAAATGCAGGTGGAGCCAATGGTATCTCCATGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCATCTGCTACAAATGCAGGTGGAGCCAATGGTATCTCCATGGGT  600

seq1  ATTCTCTGAAGATCTCAGAATATGGAAAGATCTCCCATGCTCAAGGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGAAGATCTCAGAATATGGAAAGATCTCCCATGCTCAAGGATTG  650

seq1  ACAGGATTAATATAGCAAAAATGACCATCTTGACGAAAAAAAATCCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTAATATAGCAAAAATGACCATCTTGACGAAAAAAAATCCATAG  700

seq1  ATTCAATATAATCCCCATCAAAATTCCAACTCAAAACTTCATCCAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATAATCCCCATCAAAATTCCAACTCAAAACTTCATCCAGTTAG  750

seq1  AAAGAGCAATTTGAAAATTCATCTGGAATAACAAAATAACCGGGATAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAATTTGAAAATTCATCTGGAATAACAAAATAACCGGGATAGTG  800

seq1  AAAAATATTCTCAACAATAAAATAACTTCCACAGGAATCGCTATCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTCTCAACAATAAAATAACTTCCACAGGAATCGCTATCCCT  848

seq1: chr14_110786742_110787837
seq2: B6Ng01-017J11.g_67_1161 (reverse)

seq1  CAATAGTAAAA--TAGCGAGAGAAGCC-TCAGTGATTAAGAGAACTGACT  47
      ||| |||||||  | | |||||||||| |||| |||  || ||||||| |
seq2  CAAAAGTAAAAATTGGAGAGAGAAGCCTTCAG-GAT--AGGGAACTGATT  47

seq1  GCTCTTCCAGAAATCCTGAGTTCAATTC-TCTGCAATCA-CATGGTATCT  95
      |||||| ||||||||||||||||||||| | |||||||| ||||| || |
seq2  GCTCTT-CAGAAATCCTGAGTTCAATTCTTTTGCAATCACCATGGAAT-T  95

seq1  CAAAACCATATGTAGTGGGATC-TGATGCAATTTCTCATGTG-TCTGAAG  143
      | |||||||| ||||| ||||| |||||||| |||||||||| |||||||
seq2  C-AAACCATA-GTAGT-GGATCTTGATGCAA-TTCTCATGTGTTCTGAAG  141

seq1  -ATAGCTACAGTGTACTCACATACATAAAATAAATAAACAAATAAATAAA  192
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATAGCTACAGTGTACTCACATACATAAAATAAATAAAC-AATAAATAAA  190

seq1  ATCTTTAAAAAATAATCATCACTGTGGGAGAAAGAATACATATCATAGTT  242
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCTTAAAAAAATAATCATCACTGTGGGAGAAAG-ATACATATCATAGTT  239

seq1  CAGGTTTTAAGAAGGTAGAATTCTTCCTGACACTTCCTAATTCTGACCAA  292
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGGTTTTAAGAAGGTAGAATTCTT-CTGACACTTCCTAATTCTGACCAA  288

seq1  GCAATTATATAACTGTAC-TTTTGTTTTGTTTCCAGAGATGATATTCATT  341
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAATTATATAACTGTACTTTTTGTTTTGTTTCCAGAGATGATATTCATT  338

seq1  ACTGAATAGACACTTGGGGATGGGCTAAACCTCAGATGATTGCTGTGTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAGACACTTGGGGATGGGCTAAACCTCAGATGATTGCTGTGTTA  388

seq1  TTCACTTAGGTGAGTCTTTATGGAAAGAAATGAA--TAAATATGAAAGTG  439
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TTCACTTAGGTGAGTCTTTATGGAAAGAAATGAAATAAAATATGAAAGTG  438

seq1  TGTCTGCACACAAATAATATTAAACATCAAGTAATTTAAATATACATCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCACACAAATAATATTAAACATCAAGTAATTTAAATATACATCAA  488

seq1  TATTGGTTTTGTTTTGTCTAATATGCATGGGAGCCCATGTTTTATCAGGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTTGTTTTGTCTAATATGCATGGGAGCCCATGTTTTATCAGGT  538

seq1  ATAATAGACTTTGAAAATGATTCCATGCTCATTCCAAAACCAAATGGCCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGACTTTGAAAATGATTCCATGCTCATTCCAAAACCAAATGGCCA  588

seq1  ACTGTTATCTGATGTTTGTGGTGAGTCACTCTGTCAAAACCTAACACCTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATCTGATGTTTGTGGTGAGTCACTCTGTCAAAACCTAACACCTT  638

seq1  GTTAATAAGGTTGCTTCTATGATTATACATTGTATGATTTGGCTGCATTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAGGTTGCTTCTATGATTATACATTGTATGATTTGGCTGCATTT  688

seq1  ACATGTGTTTCAGAAAAATTTCTCCTTAGATAAGCAAATGAATTTGATTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTTTCAGAAAAATTTCTCCTTAGATAAGCAAATGAATTTGATTT  738

seq1  ACCAAATCTTTATGTTGCTTTTTAATTCTTGTGTGAAGCAATGGTTTTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCTTTATGTTGCTTTTTAATTCTTGTGTGAAGCAATGGTTTTTT  788

seq1  AATTATGATTTTTATCAACTAAAAGTGCTGGATATATTCAGAAAATATTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGATTTTTATCAACTAAAAGTGCTGGATATATTCAGAAAATATTC  838

seq1  CCTGAAAGGAATAAGTGAAAATAATCAACCCGGCCATTCTATTTCAGGGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGGAATAAGTGAAAATAATCAACCCGGCCATTCTATTTCAGGGT  888

seq1  CACACTGGTAGAAGTCTTTACGCATGAGTCATGTCAAACAATTGGAAAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGTAGAAGTCTTTACGCATGAGTCATGTCAAACAATTGGAAAAG  938

seq1  TGGTAAAGAACTCCCTTGGCAGGTAACCATTCAGGATTAATTTTGAAATA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGAACTCCCTTGGCAGGTAACCATTCAGGATTAATTTTGAAATA  988

seq1  TCATAGTGATTAGATGAACCAATAGTGTTGTAAGAGTAATGGAACATCAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGATTAGATGAACCAATAGTGTTGTAAGAGTAATGGAACATCAA  1038

seq1  GAAAACCTTCCACACCAAGTCTTAATGGAAAATTTTTCTTCTGTCATACC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTTCCACACCAAGTCTTAATGGAAAATTTTTCTTCTGTCATACC  1088

seq1  AGAATTC  1096
      |||||||
seq2  AGAATTC  1095