BAC Information

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BAC

Clone NameB6Ng01-017K08
Chromosome14 (Build37)
Map Location 92,281,913 - 92,453,160
singlet/doubletdoublet
Overlap genenone
Upstream geneEG639558
Downstream geneEG665377, LOC638252, Pcdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017K08.bB6Ng01-017K08.g
ACCDH851270DH851271
length1,0781,057
definitionDH851270|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K08, 5' end.DH851271|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,281,913 - 92,282,986)(92,452,094 - 92,453,160)
sequence
gaattctatgggtactcaatacatcatacattaagtagattttgttctat
tttatttttgccatttgataaatctattattctttttctctgtgtgtttc
tctctcactgtttttatgtgtgcgtttttccacactgctcactgtgtgtg
tttagttttgcatatattaaatcatactagttatatagactgtgtgtgaa
ggtcaaaggacaaatgtctgttttggtcctttggtatcttcctctccata
ttagggccatggactctcagatgctctgttgatcttgtgttctacttttc
tccttcaggtgcatggaagaacctagaatcttgaaatatcctggtggtga
tcatatgataacagagctagttagagagaggacagcatgagtattctaca
gatagtttcttatcagttttgatggaaaacatttcacaattgcctagagc
ataagacacaatgagccctgtttatattattttggacaggtcagtatgtt
attattaaatcagtacatctgtggaagaaatgaagcttcacaatttgtca
tctttctaataatttttatgtttctctctaaatttctaattactcttgtt
atattttaaatgatatgaaaacattaatcttcacaataatgaatcatttt
aacagaataatctctaattgctatacatatctgtcatctgtcatccatat
ttctatgttttgtcttttacgtatctatctatatatctaaagtctactcc
taattggactctgatctgatacacacacacacacacacacacacacacac
acacacacacacacacacatatatatatatatatttgtgatgtgaaagat
tatagtgtgttctagccctcattacttgaggtgtttttttaaaatgctga
ttattcaatctattaaacagtttttgtggtatgaagatttagtatttcag
tagaaggtacgtttatccctgtattaattttctataatgcctccatatct
ccagtcttatatgagcctaacctagataccaatttactgatcttttttac
atttgtttctgcaaatcctcagcatggc
gaattcacataaataaaaatagaggagctaaaacctgccacagtcagagc
ctcctatcactatttctgagacataacttcagtgatgtttctggaattca
caccaaggtgtttctgaacaaaggttgtaacttttataagttaccactgt
gcatacaaaaagctgttacttatacctgctttttaatacctaatacatcc
taataagttaaccttgcttcacttgtagtacataaaaactattgtggttt
gtagtcaatcagatctttattttaatctttttttttttgcaaattaaaac
aatattcctataggcatatctttataaacatcatctgaaggagctgtatt
tgactatcctttcttggtcgttgatgggcttttactcagtattaaataag
ttctgacaattattaataagtcccagacaaagaaaatacacgaaaacaaa
gtcaggaagaaattttacagaaagtgatttgtcattaattggattgcaaa
aataaggagttggaacacattaatttctaaagatagaaagagaaaaagca
aacaatatttacctatgtgtttaaggcaagaagaatcactttcttcctga
aagaaatatttattacagtctcagtgctcccgtgatgtagtgaatggttg
acattgttatagaaaatcaattggattcaatctgggaaagttgtattata
tgcattgaaacctgacagtagcataaatcagtatttttgtggaaaaaaaa
agtcaactcaaagcaaaatgaaattcatttgtttgctttcttaagccatg
tgtgatagttactttagttccctttaaaaaggattacatttcagattgac
ttttgaactgcctgggaaagtggagcagtgagaatatttctataaaagcg
ttatttgaaattatggtttaaaaatcatttgtatcttatacatagaaaaa
caaaagcagaggtttgtgcttctctacctacacaagaacatctaaagttt
agtcactatttagggaagatgtaaatttcattgttaaatcactaaggtaa
agtatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_92281913_92282986
seq2: B6Ng01-017K08.b_49_1126

seq1  GAATTCTATGGGTACTCAATACATCATACATTAAGTAGATTTTGTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGTACTCAATACATCATACATTAAGTAGATTTTGTTCTAT  50

seq1  TTTATTTTTGCCATTTGATAAATCTATTATTCTTTTTCTCTGTGTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGCCATTTGATAAATCTATTATTCTTTTTCTCTGTGTGTTTC  100

seq1  TCTCTCACTGTTTTTATGTGTGCGTTTTTCCACACTGCTCACTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTGTTTTTATGTGTGCGTTTTTCCACACTGCTCACTGTGTGTG  150

seq1  TTTAGTTTTGCATATATTAAATCATACTAGTTATATAGACTGTGTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTGCATATATTAAATCATACTAGTTATATAGACTGTGTGTGAA  200

seq1  GGTCAAAGGACAAATGTCTGTTTTGGTCCTTTGGTATCTTCCTCTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGGACAAATGTCTGTTTTGGTCCTTTGGTATCTTCCTCTCCATA  250

seq1  TTAGGGCCATGGACTCTCAGATGCTCTGTTGATCTTGTGTTCTACTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCCATGGACTCTCAGATGCTCTGTTGATCTTGTGTTCTACTTTTC  300

seq1  TCCTTCAGGTGCATGGAAGAACCTAGAATCTTGAAATATCCTGGTGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGTGCATGGAAGAACCTAGAATCTTGAAATATCCTGGTGGTGA  350

seq1  TCATATGATAACAGAGCTAGTTAGAGAGAGGACAGCATGAGTATTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGATAACAGAGCTAGTTAGAGAGAGGACAGCATGAGTATTCTACA  400

seq1  GATAGTTTCTTATCAGTTTTGATGGAAAACATTTCACAATTGCCTAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTCTTATCAGTTTTGATGGAAAACATTTCACAATTGCCTAGAGC  450

seq1  ATAAGACACAATGAGCCCTGTTTATATTATTTTGGACAGGTCAGTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACACAATGAGCCCTGTTTATATTATTTTGGACAGGTCAGTATGTT  500

seq1  ATTATTAAATCAGTACATCTGTGGAAGAAATGAAGCTTCACAATTTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAATCAGTACATCTGTGGAAGAAATGAAGCTTCACAATTTGTCA  550

seq1  TCTTTCTAATAATTTTTATGTTTCTCTCTAAATTTCTAATTACTCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATAATTTTTATGTTTCTCTCTAAATTTCTAATTACTCTTGTT  600

seq1  ATATTTTAAATGATATGAAAACATTAATCTTCACAATAATGAATCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAATGATATGAAAACATTAATCTTCACAATAATGAATCATTTT  650

seq1  AACAGAATAATCTCTAATTGCTATACATATCTGTCATCTGTCATCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATAATCTCTAATTGCTATACATATCTGTCATCTGTCATCCATAT  700

seq1  TTCTATGTTTTGTCTTTTACGTATCTATCTATATATCTAAAGTCTACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTTTGTCTTTTACGTATCTATCTATATATCTAAAGTCTACTCC  750

seq1  TAATTGGACTCTGATCTGATACACACACACACACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGACTCTGATCTGATACACACACACACACACACACACACACACAC  800

seq1  ACACACACACACACACACATATATATATATATA-TTGTGATGTGAAAGAT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACACACACACACACACATATATATATATATATTTGTGATGTGAAAGAT  850

seq1  TATAGTGTGTTCTAGCCCTCATTACTTGAGGTGTTTTTTTAAAATGCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTGTTCTAGCCCTCATTACTTGAGGTGTTTTTTTAAAATGCTGA  900

seq1  TTATTCAATCTATTAAACAG-TTTTGTGGTATGAAAGATTTAGTA-TTCA  947
      |||||||||||||||||||| |||||||||||| ||||||||||| ||||
seq2  TTATTCAATCTATTAAACAGTTTTTGTGGTATG-AAGATTTAGTATTTCA  949

seq1  GTAG-AGGTACGTTTAATCCCTGTATTAATTTTCTTATAATGCCTCCATA  996
      |||| |||||||||| |||||||||||||||||| |||||||||||||||
seq2  GTAGAAGGTACGTTT-ATCCCTGTATTAATTTTC-TATAATGCCTCCATA  997

seq1  TCTCCAGTCTTATATGAG-CTAACCTAAGATAACCAATTACTGATC-TTT  1044
      |||||||||||||||||| ||||||| ||||| | | ||||||||| |||
seq2  TCTCCAGTCTTATATGAGCCTAACCT-AGATACCAATTTACTGATCTTTT  1046

seq1  TTACATTTG-TTCTGCAAAT-CTCAGCATGGC  1074
      ||||||||| |||||||||| |||||||||||
seq2  TTACATTTGTTTCTGCAAATCCTCAGCATGGC  1078

seq1: chr14_92452094_92453160
seq2: B6Ng01-017K08.g_65_1121 (reverse)

seq1  TGATACTTTACTTAAGTGTATTTTAACAATTGAAATTGTACATCTTCCCT  50
      ||||||||||| | ||||   |||||||| ||||||| ||||||||||||
seq2  TGATACTTTACCTTAGTG--ATTTAACAA-TGAAATT-TACATCTTCCCT  46

seq1  AAATAGTTGACTATAACCTTTAGAATGTTCTTTGTGTGGGTAGAGGAGGC  100
      |||||| ||||  ||| |||||| |||||| |||||| |||||| || ||
seq2  AAATAG-TGAC--TAAACTTTAG-ATGTTC-TTGTGTAGGTAGA-GAAGC  90

seq1  ACAAAACCTCTGCTTTTGTTTTTCTATGTATAAGATACAAATGATTTTTA  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-AAACCTCTGCTTTTGTTTTTCTATGTATAAGATACAAATGATTTTTA  139

seq1  AACCATATTTTCAAATAACGCTTTTATAGAAATATTCTCACTGCTCCACT  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAATTTCAAATAACGCTTTTATAGAAATATTCTCACTGCTCCACT  189

seq1  TTCCCAGGCAGTTC-AAAGTCAATCTGAAATGTAATCCTTTTTAAAGGGA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGCAGTTCAAAAGTCAATCTGAAATGTAATCCTTTTTAAAGGGA  239

seq1  ACTAAAGTAACTATCACACATGGCTTAAGAAAGCAAACAAATGAATTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTAACTATCACACATGGCTTAAGAAAGCAAACAAATGAATTTCA  289

seq1  TTTTGCTTTGAGTTGACTTTTTTTTTCCACAAAAATACTGATTTATGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTGAGTTGACTTTTTTTTTCCACAAAAATACTGATTTATGCTA  339

seq1  CTGTCAGGTTTCAATGCATATAATACAACTTTCCCAGATTGAATCCAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGTTTCAATGCATATAATACAACTTTCCCAGATTGAATCCAATT  389

seq1  GATTTTCTATAACAATGTCAACCATTCACTACATCACGGGAGCACTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTATAACAATGTCAACCATTCACTACATCACGGGAGCACTGAGA  439

seq1  CTGTAATAAATATTTCTTTCAGGAAGAAAGTGATTCTTCTTGCCTTAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATAAATATTTCTTTCAGGAAGAAAGTGATTCTTCTTGCCTTAAAC  489

seq1  ACATAGGTAAATATTGTTTGCTTTTTCTCTTTCTATCTTTAGAAATTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTAAATATTGTTTGCTTTTTCTCTTTCTATCTTTAGAAATTAAT  539

seq1  GTGTTCCAACTCCTTATTTTTGCAATCCAATTAATGACAAATCACTTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAACTCCTTATTTTTGCAATCCAATTAATGACAAATCACTTTCT  589

seq1  GTAAAATTTCTTCCTGACTTTGTTTTCGTGTATTTTCTTTGTCTGGGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTCTTCCTGACTTTGTTTTCGTGTATTTTCTTTGTCTGGGACT  639

seq1  TATTAATAATTGTCAGAACTTATTTAATACTGAGTAAAAGCCCATCAACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAATTGTCAGAACTTATTTAATACTGAGTAAAAGCCCATCAACG  689

seq1  ACCAAGAAAGGATAGTCAAATACAGCTCCTTCAGATGATGTTTATAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAAGGATAGTCAAATACAGCTCCTTCAGATGATGTTTATAAAGA  739

seq1  TATGCCTATAGGAATATTGTTTTAATTTGCAAAAAAAAAAAGATTAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTATAGGAATATTGTTTTAATTTGCAAAAAAAAAAAGATTAAAAT  789

seq1  AAAGATCTGATTGACTACAAACCACAATAGTTTTTATGTACTACAAGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTGATTGACTACAAACCACAATAGTTTTTATGTACTACAAGTGA  839

seq1  AGCAAGGTTAACTTATTAGGATGTATTAGGTATTAAAAAGCAGGTATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTTAACTTATTAGGATGTATTAGGTATTAAAAAGCAGGTATAAG  889

seq1  TAACAGCTTTTTGTATGCACAGTGGTAACTTATAAAAGTTACAACCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTTTTGTATGCACAGTGGTAACTTATAAAAGTTACAACCTTTG  939

seq1  TTCAGAAACACCTTGGTGTGAATTCCAGAAACATCACTGAAGTTATGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACACCTTGGTGTGAATTCCAGAAACATCACTGAAGTTATGTCT  989

seq1  CAGAAATAGTGATAGGAGGCTCTGACTGTGGCAGGTTTTAGCTCCTCTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGTGATAGGAGGCTCTGACTGTGGCAGGTTTTAGCTCCTCTAT  1039

seq1  TTTTATTTATGTGAATTC  1067
      ||||||||||||||||||
seq2  TTTTATTTATGTGAATTC  1057