BAC Information

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BAC

Clone NameB6Ng01-017N06
Chromosome14 (Build37)
Map Location 85,010,271 - 85,011,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017N06.bB6Ng01-017N06.g
ACCDH851392DH851393
length1,080780
definitionDH851392|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N06, 5' end.DH851393|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggcctgatgaaaatgaagaaaagtagcattttcagtatcaac
accacctaaaaagtatagctcatgctgaaatattcacattagcatggcat
taggaactgggaattaaagaaatttacaaccaagtctcatttgccacttg
tattttgtgaagatgatagaaaatgacataaaatgaccaagctaatagtc
tggaatgtggcatcttcacgcttaacttcattaatgtcacttcctgttat
ggttacaggcttgttggggtgtactctagtttaataataaaatagaaagt
atctgaatcacattcaataataggaaagacattggacaccactcttcttc
atttcttatatttgctgatggtatgaacaccagagaacagtcttttgggg
tcagggttatcaataagtttatttataaatccctaaactatatatttcaa
aattctctatcaaatctgtgtttcctttctattttgtaaatataatggat
tgtattagtgcaaacaaaaaagggtcaatgtttttgggcaatttgaatat
atacctcatagagactttggaaactcaaagctggtaaccacaggcaaaat
aaaagctatgcttctacctaaccacatgttgtagtgtgcatttactgaca
agtaccatatttttgctagttcagtttttcttctttagcattattaaaat
tattattacttttatttctttacagtctagccattgcccccttccctgtt
cttcctcccaattcctcctcacgcctgtctccaacaagacacccacaccc
aggcctcctctctccctaggctcttacttctcttgagggtaaggcacata
ttctcccactgaggctagaccaggagttcctctgctacatatgtgttgat
ggtcttaaataagcttcatgtttgctgcctggtgagtggctcagtgtctg
agagatctcatggatctgggttagttgatactgaactgctatcttcctag
gcgttagcccttcttttcttaacttcttctagcctttctctaatcaatcc
aggggggttcctgacctcagtccaatggat

gaattctcaccctataagacttcctgggggcccagtagccagcgacttga
ccgtccagatatgcaggatggaagcaaacatgaatggtaatatttgacta
tgtttggttaataaaatgattcccagtgatactctgttatactcacagat
tagcactaaataaaattgctatcggaggcttcacctagtaactgatgaaa
acagatgcagagatccacaaccatacattaggtagagcttagggaatcct
gaggaagagggaatgaaggagagtaggagcaagagtggccaaagacacca
caagaagagccaaagaatcaactaacctgttagatagagctcatcaggat
tcacagagactcaaccgccactcagaccctgaatggggttgacctatgtc
ctctgggcatgttacagttgtgtagcttgattttcttgtgtgactcttac
cagtggaaacaggaattctctttgactcttttacctgcctttgagacctt
ctccttctgctggattgtttgtggagccttgataggagagaaagtaccta
gtattactgcacttgatatgctatagctggttgatactcataggaagcca
gcccttttctgaagggagaagtaaacgagagaggccagggaggaaaaagg
ggagataaggggaagggaaaggactaggagaagagaaaggggaaaaactg
tagtcaagatgttaaataaataaactaaaactatgaaagccgggtaaatt
tattttcattaaattttgctacaagattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85010271_85011348
seq2: B6Ng01-017N06.b_45_1124

seq1  GAATTCATGGCCTGATGAAAATGAAGAAAAGTAGCATTTTCAGTATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCTGATGAAAATGAAGAAAAGTAGCATTTTCAGTATCAAC  50

seq1  ACCACCTAAAAAGTATAGCTCATGCTGAAATATTCACATTAGCATGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTAAAAAGTATAGCTCATGCTGAAATATTCACATTAGCATGGCAT  100

seq1  TAGGAACTGGGAATTAAAGAAATTTACAACCAAGTCTCATTTGCCACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTGGGAATTAAAGAAATTTACAACCAAGTCTCATTTGCCACTTG  150

seq1  TATTTTGTGAAGATGATAGAAAATGACATAAAATGACCAAGCTAATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGAAGATGATAGAAAATGACATAAAATGACCAAGCTAATAGTC  200

seq1  TGGAATGTGGCATCTTCACGCTTAACTTCATTAATGTCACTTCCTGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTGGCATCTTCACGCTTAACTTCATTAATGTCACTTCCTGTTAT  250

seq1  GGTTACAGGCTTGTTGGGGTGTACTCTAGTTTAATAATAAAATAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGCTTGTTGGGGTGTACTCTAGTTTAATAATAAAATAGAAAGT  300

seq1  ATCTGAATCACATTCAATAATAGGAAAGACATTGGACACCACTCTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATCACATTCAATAATAGGAAAGACATTGGACACCACTCTTCTTC  350

seq1  ATTTCTTATATTTGCTGATGGTATGAACACCAGAGAACAGTCTTTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATATTTGCTGATGGTATGAACACCAGAGAACAGTCTTTTGGGG  400

seq1  TCAGGGTTATCAATAAGTTTATTTATAAATCCCTAAACTATATATTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTATCAATAAGTTTATTTATAAATCCCTAAACTATATATTTCAA  450

seq1  AATTCTCTATCAAATCTGTGTTTCCTTTCTATTTTGTAAATATAATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTATCAAATCTGTGTTTCCTTTCTATTTTGTAAATATAATGGAT  500

seq1  TGTATTAGTGCAAACAAAAAAGGGTCAATGTTTTTGGGCAATTTGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGTGCAAACAAAAAAGGGTCAATGTTTTTGGGCAATTTGAATAT  550

seq1  ATACCTCATAGAGACTTTGGAAACTCAAAGCTGGTAACCACAGGCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCATAGAGACTTTGGAAACTCAAAGCTGGTAACCACAGGCAAAAT  600

seq1  AAAAGCTATGCTTCTACCTAACCACATGTTGTAGTGTGCATTTACTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTATGCTTCTACCTAACCACATGTTGTAGTGTGCATTTACTGACA  650

seq1  AGTACCATATTTTTGCTAGTTCAGTTTTTCTTCTTTAGCATTATTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATATTTTTGCTAGTTCAGTTTTTCTTCTTTAGCATTATTAAAAT  700

seq1  TATTATTACTTTTATTTCTTTACAGTCTAGCCATTGCCCCCTTCCCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACTTTTATTTCTTTACAGTCTAGCCATTGCCCCCTTCCCTGTT  750

seq1  CTTCCTCCC-ATTCCTCCTCACGCCTGTCTCCAACAAGACACCCACACCC  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCAATTCCTCCTCACGCCTGTCTCCAACAAGACACCCACACCC  800

seq1  AGGCCTCCTCTCTCCCTAGGCTCTTACTTCTCTTGAGGGTAAGGCACATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCTCTCTCCCTAGGCTCTTACTTCTCTTGAGGGTAAGGCACATA  850

seq1  TTCTCCCACTGAGGCTAGACCAGGAGGTCCTCTGCTACATATGTGTTGAT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTCCCACTGAGGCTAGACCAGGAGTTCCTCTGCTACATATGTGTTGAT  900

seq1  GGTCTCAGATAAGC-TCATGTTTGCTGCCTGGTGAGTGGCTCAGTGTCTG  948
      ||||| | |||||| |||||||||||||||||||||||||||||||||||
seq2  GGTCTTAAATAAGCTTCATGTTTGCTGCCTGGTGAGTGGCTCAGTGTCTG  950

seq1  AGAGATCTCAGGGATCTGGGTTAGTTGATACTGAAACTGCTAGTCTTCCT  998
      |||||||||| |||||||||||||||||||||| |||||||| |||||||
seq2  AGAGATCTCATGGATCTGGGTTAGTTGATACTG-AACTGCTA-TCTTCCT  998

seq1  AGGCGGTAGCCCTTC--TTCTCAACTTCTTCTAGCCTTTCTCTAATTCAA  1046
      ||||| |||||||||  |||| ||||||||||||||||||||||| ||||
seq2  AGGCGTTAGCCCTTCTTTTCTTAACTTCTTCTAGCCTTTCTCTAA-TCAA  1047

seq1  T-CACAGGGGTCCCTGACTTCAGTCCAATGGTT  1078
      | ||  ||||| |||||| |||||||||||| |
seq2  TCCAGGGGGGTTCCTGACCTCAGTCCAATGGAT  1080


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