BAC Information

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BAC

Clone NameB6Ng01-019E07
Chromosome14 (Build37)
Map Location 56,655,701 - 56,783,659
singlet/doubletdoublet
Overlap geneMcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095
Upstream geneZfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9
Downstream geneGzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019E07.bB6Ng01-019E07.g
ACCDH852412DH852413
length974991
definitionDH852412|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E07, 5' end.DH852413|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,655,701 - 56,656,501)(56,782,654 - 56,783,659)
sequence
gaattccagcctagtggggtaaatctcaccaaatatcagacaacagtcta
aatttaaatgctcacttcctgggacaaaaatacaaacaatgtagaaaacc
tataaaatgtgcctacctactaaataaccaattctattgcaatgttccct
aaagagtaaaactcagatgatatccaactcacagaactctgagagtctat
gaaaatatgaaacttataaattatgtataaatgctaactcagattcttat
acccgacaaacgtatactaaaattgaagatgacataaaaacttctggtga
taacaatctattagaatagtactgaattctcaatggtgactctgaaggcc
tagatagaggttttacaagctctaaaagaccatagatgcaaatccagact
attatacccagcaatactatttatcaccattgatggagaaagaaaacatg
tcatgataaacataaaactaagcaatttctatccaccaatacagctttat
ggaaggcagtaaaaggaaaatttcaattggaaggggtcaagcacaatcaa
gaaaaaacaagaaatagtaaacaatgctaaactagtaagttacagttatc
agggcatacgttgtgtgggtcatacaacaaaacaacagaataactggaat
caacaaatactgctcagtgataactgttcaataatgatggtctcaatttc
caataaaaagatatagactaagagaatggttgagaattcaggattcatcc
tatggctgcatccaaaaaaacgtgtgcatcaacaccacggaatgacatca
acttaggttaaagggtagaaagtggtattccaagcaaaaggatccaagaa
gcaaacaggtgtagctatttttatatacagcaaagcagacttcaaataaa
aactggtcagaaaagataggtaagaacactatatacccattaaaatagat
ccatcaagacgacttctcagttat
gaattccatggacagagaaactcatcaagacctccagtttgtcaagtacc
atggcttatcctagaatctcagcctccccctgctgaccacatagggatat
gtcagtttgtgaaatctagaaatccaagagatgctaggcaagaagtatct
cttgacatcaacaataaacaattttaggtctctggttttgtatcaggtac
acagtagactccttcttcagctttatcctcttgtttctttagacaggtca
acatgacacagatggatctatatctggaatgcacagaaaaaaatcatgtt
ttaaaaaaatgattaaattctctcgattctaacagttctaagtccctggc
attcttgggttcagaatgcagtgtgtagaattggaaggaagttggaagac
ttccaactctctggatttcagtgtacttcaggtagggcccctactgtaat
ttgtggacagaagaaaggcaagtagagaggatttggcttccttgaaattc
aaatcgtacactcagtctagctgaagtataagacagcccatgctgaccca
tgaccctattcaagtccctcacacagcagcctggcgaattatagtttttc
ttctctcatacattccatcctgggggaggtctttaagaatgaaatccaac
agtttttagcaaggggattagggtaaaagtcaaaacccatgggcgccatg
tctgtcatgctaggacttgtcttagccatgctcagacctgctagagccat
ttcttgaagttggtgcgaatcttttcctagaatgccatttttatctaact
gacaggttcctttgcctacagaaatttgtcacttttatgagtcccaattt
aaaactgttggtctagggactacactatcattgttctgtcagaaagtgtc
tcctgtgccatgcgttcaggctttcctcaccttttttttatcagttgatg
tcgtgtattatgttaatgtcttcgtccactgccctcagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56655701_56656501
seq2: B6Ng01-019E07.b_43_843

seq1  GAATTCCAGCCTAGTGGGGTAAATCTCACCAAATATCAGACAACAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTAGTGGGGTAAATCTCACCAAATATCAGACAACAGTCTA  50

seq1  AATTTAAATGCTCACTTCCTGGGACAAAAATACAAACAATGTAGAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATGCTCACTTCCTGGGACAAAAATACAAACAATGTAGAAAACC  100

seq1  TATAAAATGTGCCTACCTACTAAATAACCAATTCTATTGCAATGTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGTGCCTACCTACTAAATAACCAATTCTATTGCAATGTTCCCT  150

seq1  AAAGAGTAAAACTCAGATGATATCCAACTCACAGAACTCTGAGAGTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAAAACTCAGATGATATCCAACTCACAGAACTCTGAGAGTCTAT  200

seq1  GAAAATATGAAACTTATAAATTATGTATAAATGCTAACTCAGATTCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGAAACTTATAAATTATGTATAAATGCTAACTCAGATTCTTAT  250

seq1  ACCCGACAAACGTATACTAAAATTGAAGATGACATAAAAACTTCTGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACAAACGTATACTAAAATTGAAGATGACATAAAAACTTCTGGTGA  300

seq1  TAACAATCTATTAGAATAGTACTGAATTCTCAATGGTGACTCTGAAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCTATTAGAATAGTACTGAATTCTCAATGGTGACTCTGAAGGCC  350

seq1  TAGATAGAGGTTTTACAAGCTCTAAAAGACCATAGATGCAAATCCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGAGGTTTTACAAGCTCTAAAAGACCATAGATGCAAATCCAGACT  400

seq1  ATTATACCCAGCAATACTATTTATCACCATTGATGGAGAAAGAAAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCCAGCAATACTATTTATCACCATTGATGGAGAAAGAAAACATG  450

seq1  TCATGATAAACATAAAACTAAGCAATTTCTATCCACCAATACAGCTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAAACATAAAACTAAGCAATTTCTATCCACCAATACAGCTTTAT  500

seq1  GGAAGGCAGTAAAAGGAAAATTTCAATTGGAAGGGGTCAAGCACAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGTAAAAGGAAAATTTCAATTGGAAGGGGTCAAGCACAATCAA  550

seq1  GAAAAAACAAGAAATAGTAAACAATGCTAAACTAGTAAGTTACAGTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAAGAAATAGTAAACAATGCTAAACTAGTAAGTTACAGTTATC  600

seq1  AGGGCATACGTTGTGTGGGTCATACAACAAAACAACAGAATAACTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATACGTTGTGTGGGTCATACAACAAAACAACAGAATAACTGGAAT  650

seq1  CAACAAATACTGCTCAGTGATAACTGTTCAATAATGATGGTCTCAATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATACTGCTCAGTGATAACTGTTCAATAATGATGGTCTCAATTTC  700

seq1  CAATAAAAAGATATAGACTAAGAGAATGGTTGAGAATTCAGGATTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAGATATAGACTAAGAGAATGGTTGAGAATTCAGGATTCATCC  750

seq1  TATGGCTGCATCCAAAAAAACGTGTGCATCAACACCACGGAATGACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGCATCCAAAAAAACGTGTGCATCAACACCACGGAATGACATCA  800

seq1  A  801
      |
seq2  A  801

seq1: chr14_56782654_56783659
seq2: B6Ng01-019E07.g_71_1061 (reverse)

seq1  AAACATGAGGGCAAGTGGACCGAAGACCTTAACATAAATCCACGTACAAT  50
      |||| ||||||| |||||| ||||||| ||||||| ||| |||| || ||
seq2  AAAC-TGAGGGC-AGTGGA-CGAAGACATTAACAT-AATACACG-AC-AT  44

seq1  CAACCTGATAAAAAATAAGGTGAGGAAAAGCCTTGAACGCATTGGCACAG  100
      ||| ||||||||||| ||||||||| |||||| |||||||| ||||||||
seq2  CAA-CTGATAAAAAA-AAGGTGAGG-AAAGCC-TGAACGCA-TGGCACAG  89

seq1  GAGACAACTTTCTGAACAGAACAATGATAGTGTAGTCCCTAAGACCAACA  150
      ||||| |||||||| ||||||||||||||||||||||||| |||||||||
seq2  GAGAC-ACTTTCTG-ACAGAACAATGATAGTGTAGTCCCT-AGACCAACA  136

seq1  GTTTTTAATTGGGACTTCATAAAAGTGACAAATTTCTGTAAGGCAAAGGA  200
      ||||| ||||||||| ||||||||||||||||||||||| ||||||||||
seq2  GTTTTAAATTGGGAC-TCATAAAAGTGACAAATTTCTGT-AGGCAAAGGA  184

seq1  ACCTGTCAGTTAGATAAAAATGGCATTCTAGGAAAAGATTCGCACCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAGTTAGATAAAAATGGCATTCTAGGAAAAGATTCGCACCAACT  234

seq1  TCAAG-AATGGCTCTAGCAGGTCTGAGCATGGCTAAGACAAGTCCTAGCA  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATGGCTCTAGCAGGTCTGAGCATGGCTAAGACAAGTCCTAGCA  284

seq1  TGACAGACATGGCGCCCATGGGTTTTGACTTTTACCCTAATCCCCTTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACATGGCGCCCATGGGTTTTGACTTTTACCCTAATCCCCTTGCT  334

seq1  AAAAACTGTTGGATTTCATTCTTAAAGACCTCCCCCAGGATGGAATGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTTGGATTTCATTCTTAAAGACCTCCCCCAGGATGGAATGTAT  384

seq1  GAGAGAAGAAAAACTATAATTCGCCAGGCTGCTGTGTGAGGGACTTGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAAAAACTATAATTCGCCAGGCTGCTGTGTGAGGGACTTGAAT  434

seq1  AGGGTCATGGGTCAGCATGGGCTGTCTTATACTTCAGCTAGACTGAGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATGGGTCAGCATGGGCTGTCTTATACTTCAGCTAGACTGAGTGT  484

seq1  ACGATTTGAATTTCAAGGAAGCCAAATCCTCTCTACTTGCCTTTCTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTGAATTTCAAGGAAGCCAAATCCTCTCTACTTGCCTTTCTTCTG  534

seq1  TCCACAAATTACAGTAGGGGCCCTACCTGAAGTACACTGAAATCCAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAATTACAGTAGGGGCCCTACCTGAAGTACACTGAAATCCAGAGA  584

seq1  GTTGGAAGTCTTCCAACTTCCTTCCAATTCTACACACTGCATTCTGAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGTCTTCCAACTTCCTTCCAATTCTACACACTGCATTCTGAACC  634

seq1  CAAGAATGCCAGGGACTTAGAACTGTTAGAATCGAGAGAATTTAATCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGCCAGGGACTTAGAACTGTTAGAATCGAGAGAATTTAATCATT  684

seq1  TTTTTAAAACATGATTTTTTTCTGTGCATTCCAGATATAGATCCATCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACATGATTTTTTTCTGTGCATTCCAGATATAGATCCATCTGT  734

seq1  GTCATGTTGACCTGTCTAAAGAAACAAGAGGATAAAGCTGAAGAAGGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTGACCTGTCTAAAGAAACAAGAGGATAAAGCTGAAGAAGGAGT  784

seq1  CTACTGTGTACCTGATACAAAACCAGAGACCTAAAATTGTTTATTGTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTACCTGATACAAAACCAGAGACCTAAAATTGTTTATTGTTGA  834

seq1  TGTCAAGAGATACTTCTTGCCTAGCATCTCTTGGATTTCTAGATTTCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAGATACTTCTTGCCTAGCATCTCTTGGATTTCTAGATTTCACA  884

seq1  AACTGACATATCCCTATGTGGTCAGCAGGGGGAGGCTGAGATTCTAGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACATATCCCTATGTGGTCAGCAGGGGGAGGCTGAGATTCTAGGAT  934

seq1  AAGCCATGGTACTTGACAAACTGGAGGTCTTGATGAGTTTCTCTGTCCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGTACTTGACAAACTGGAGGTCTTGATGAGTTTCTCTGTCCAT  984

seq1  GGAATTC  1006
      |||||||
seq2  GGAATTC  991