BAC Information

Click to search

BAC

Clone NameB6Ng01-019K11
Chromosome14 (Build37)
Map Location 39,222,405 - 39,339,448
singlet/doubletdoublet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K11.bB6Ng01-019K11.g
ACCDH852683DH852684
length1,152411
definitionDH852683|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K11, 5' end.DH852684|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,222,405 - 39,223,580)(39,339,032 - 39,339,448)
sequence
gaattcctcacactgacaaagatcagcttactgttacacatacacatgta
atggaaaactatgtactatcatgaagacctgaaatctttgtccttaagag
accaataatgactgcttgcatcacttctactaggcactgaaacaaacata
ttctattaggggcaatggatgaaaatttaccttttcagacattgttgata
tctgtgtaggaaagctattggaatttacaaaggaggtaggagagcttgta
gctgaagttatgtttgtagtacacaaagtatgaaaaaaattgcattgctt
aaatgtatccttaatagaatcaaatgagttgaatttgaaaggaagacatt
ataacaacataaaaacatgatatttatacagataagtttgaaaaaatgca
tgcaggtcttgttgaaaagtttgaaggcagactgaaagtgttgaaaggac
agaaacatagacatatatgttatgataagaagacacattcttagacaatg
cagctttccagggtggcagggtgcaatattacagaaacttcttggtttgg
aaacacacttctgtattcctagcactcatgaggctgagaaaagaataact
caattttgaagcctgactgggctacacaatgagatagtatctgaaaaaac
taaacaccttagagaaattttgctgttatcatagaaactaaaaagctgat
tttaaatgtttgatggaaacatagaagataaagagtgcatacaacattat
ttctaaagtcaagaaaacagagattttatcataagaagagctaaagcagt
caaaggaatgcctaattctagagaaaaacaatggaacatataagagagtc
tagaaatatgtttctttttccccacatttttattagatattttcttcatt
acatttaaactctatcccaaaagtcccctatgccttccccagcccagctc
cctacccacctactcccacttctggtctgtgtcccctgtactggggcaaa
aaagtttgctagacaaagggcctctctcccaataatggccaactaggcca
tcttctgctaatatgcagctagagacaccaagtccaaaaatagcttgacc
caagtcacattacaatgaaataactttaaatgatgcaaataaaataaaaa
ta
aaatcctgctactatcagttacatgttgaagaaactaagcaatttctgtc
tggtgtgccccttatcaggtacaactctaaaacaggaatacaaaaggttc
tacttcatcatgttgctgcaggttttaactgagataaggcatgtatagta
aataaaatataggcctgtctcagacatattattgttatttttattatttt
aaaattataattgtaggtgggtcatttaacactactcaactgtagtttga
actgtagtagaataacagtcatggcttacccaggatctaagtattggggt
aggtgggggaaggctaaagttggaggtttggtagatccttgtgctagtgt
ccaaagggtctctattcagatatttaaattctttatctattcaccacggt
cttcatcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_39222405_39223580
seq2: B6Ng01-019K11.b_44_1195

seq1  GAATTCCTCACACTGACAAAGATCAGCTTACTG-GACACATACACATGTA  49
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GAATTCCTCACACTGACAAAGATCAGCTTACTGTTACACATACACATGTA  50

seq1  ATGGAAAACTATGTACTATCATGAAGACCTGAAATCTTTGTCCTTAAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACTATGTACTATCATGAAGACCTGAAATCTTTGTCCTTAAGAG  100

seq1  ACCAATAATGACTGCTTGCATCACTTCTACTAGGCACTGAAACAAACATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAATGACTGCTTGCATCACTTCTACTAGGCACTGAAACAAACATA  150

seq1  TTCTATTAGGGGCAATGGATGAAAATTTACCTTTTCAGACATTGTTGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAGGGGCAATGGATGAAAATTTACCTTTTCAGACATTGTTGATA  200

seq1  TCTGTGTAGGAAAGCTATTGGAATTTACAAAGGAGGTAGGAGAGCTTGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGGAAAGCTATTGGAATTTACAAAGGAGGTAGGAGAGCTTGTA  250

seq1  GCTGAAGTTATGTTTGTAGTACACAAAGTATGAAAAAAATTGCATTGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTATGTTTGTAGTACACAAAGTATGAAAAAAATTGCATTGCTT  300

seq1  AAATGTATCCTTAATAGAATCAAATGAGTTGAATTTGAAAGGAAGACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATCCTTAATAGAATCAAATGAGTTGAATTTGAAAGGAAGACATT  350

seq1  ATAACAACATAAAAACATGATATTTATACAGATAAGTTTGAAAAAATGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACATAAAAACATGATATTTATACAGATAAGTTTGAAAAAATGCA  400

seq1  TGCAGGTCTTGTTGAAAAGTTTGAAGGCAGACTGAAAGTGTTGAAAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCTTGTTGAAAAGTTTGAAGGCAGACTGAAAGTGTTGAAAGGAC  450

seq1  AGAAACATAGACATATATGTTATGATAAGAAGACACATTCTTAGACAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATAGACATATATGTTATGATAAGAAGACACATTCTTAGACAATG  500

seq1  CAGCTTTCCAGGGTGGCAGGGTGCAATATTACAGAAACTTCTTGGTTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCCAGGGTGGCAGGGTGCAATATTACAGAAACTTCTTGGTTTGG  550

seq1  AAACACACTTCTGTATTCCTAGCACTCATGAGGCTGAGAAAAGAATAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACTTCTGTATTCCTAGCACTCATGAGGCTGAGAAAAGAATAACT  600

seq1  CAATTTTGAAGCCTGACTGGGCTACACAATGAGATAGTATCTGAAAAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGAAGCCTGACTGGGCTACACAATGAGATAGTATCTGAAAAAAC  650

seq1  TAAACACCTTAGAGAAATTTTGCTGTTATCATAGAAACTAAAAAGCTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCTTAGAGAAATTTTGCTGTTATCATAGAAACTAAAAAGCTGAT  700

seq1  TTTAAATGTTTGATGGAAACATAGAAGATAAAGAGTGCATACAACATTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTTTGATGGAAACATAGAAGATAAAGAGTGCATACAACATTAT  750

seq1  TTCTAAAGTCAAGAAAACAGAGATTTTATCATAAGAAGAGCTAAAGCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGTCAAGAAAACAGAGATTTTATCATAAGAAGAGCTAAAGCAGT  800

seq1  CAAAGGAATGCCTAATTCTAGAGAAAAACAATGGAACATATAAGAGAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATGCCTAATTCTAGAGAAAAACAATGGAACATATAAGAGAGTC  850

seq1  TAGAAATATGTTTCTTTTTCCCCACATTTTTATTAGATATTTTCTTCATT  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGAAATATGTTTCTTTTTCCCCACATTTTTATTAGATATTTTCTTCA-T  899

seq1  TACATTTAAAACTCTATCCCAAAAGTCCCCTATGCCTTCCCCCAGCCCAG  949
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TACATTT-AAACTCTATCCCAAAAGTCCCCTATGCCTT-CCCCAGCCCAG  947

seq1  CTCCCCTACCCACCTACTCCCACTTCTTGGTCTTGGTGTTCCCCTGTACT  999
      || ||||||||||||||||||||||| ||||||  ||| |||||||||||
seq2  CT-CCCTACCCACCTACTCCCACTTC-TGGTCT--GTG-TCCCCTGTACT  992

seq1  GGGGCATATAAAGTTTGCTAGACCAAGGGGCCTCTCTTCCCAATAATGGC  1049
      |||||| | ||||||||||||| ||| ||||||||| |||||||||||||
seq2  GGGGCA-AAAAAGTTTGCTAGA-CAAAGGGCCTCTC-TCCCAATAATGGC  1039

seq1  CAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACAAAGTTCCAG  1099
      ||||||||||||||||||||| |||||||||||||||||| ||| |||| 
seq2  CAACTAGGCCATCTTCTGCTA-ATATGCAGCTAGAGACACCAAG-TCCA-  1086

seq1  AAATTAGCTATTGACCACAATTTCACATTTTACATAGAAATAAACTTTTA  1149
      ||| ||||  |||||| |||  |||||  |||||  |||||||   ||||
seq2  AAAATAGC--TTGACC-CAA-GTCACA--TTACAATGAAATAA--CTTTA  1128

seq1  AATGATGCAAATATAAAAATAAAAATA  1176
      ||||||||||||   ||||||||||||
seq2  AATGATGCAAAT---AAAATAAAAATA  1152

seq1: chr14_39339032_39339448
seq2: B6Ng01-019K11.g_68_483 (reverse)

seq1  GAAGATGATGACCTTGGTGAATTGATAAAGAATTTAATTATCTGGATAGA  50
      |||||||| |||| |||||||| |||||||||||||| |||||| |||||
seq2  GAAGATGAAGACCGTGGTGAATAGATAAAGAATTTAAATATCTGAATAGA  50

seq1  GACCCTTAGGACAATAGCACATAGGATCTACCAAACCTCCAACTTTAGCC  100
      ||||||| ||||| ||||||| ||||||||||||||||||||||||||||
seq2  GACCCTTTGGACACTAGCACA-AGGATCTACCAAACCTCCAACTTTAGCC  99

seq1  TTCCCCCACCTACCCCAATACTTAGATCCTGGGTAAGCCATGACTGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCACCTACCCCAATACTTAGATCCTGGGTAAGCCATGACTGTTAT  149

seq1  TCTACTACAGTTCAAACTACAGTTGAGTAGTGTTAAATGACCCACCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACAGTTCAAACTACAGTTGAGTAGTGTTAAATGACCCACCTACA  199

seq1  ATTATAATTTTAAAATAATAAAAATAACAATAATATGTCTGAGACAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTTTAAAATAATAAAAATAACAATAATATGTCTGAGACAGGCC  249

seq1  TATATTTTATTTACTATACATGCCTTATCTCAGTTAAAACCTGCAGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATTTACTATACATGCCTTATCTCAGTTAAAACCTGCAGCAAC  299

seq1  ATGATGAAGTAGAACCTTTTGTATTCCTGTTTTAGAGTTGTACCTGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAGTAGAACCTTTTGTATTCCTGTTTTAGAGTTGTACCTGATAA  349

seq1  GGGGCACACCAGACAGAAATTGCTTAGTTTCTTCAACATGTAACTGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACACCAGACAGAAATTGCTTAGTTTCTTCAACATGTAACTGATAG  399

seq1  TAGCAGGATTTGAATTC  417
      |||||||||||||||||
seq2  TAGCAGGATTTGAATTC  416