BAC Information

Click to search

BAC

Clone NameB6Ng01-020A04
Chromosome14 (Build37)
Map Location 49,353,752 - 49,354,889
singlet/doubletsinglet
Overlap genenone
Upstream geneKtn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
Downstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020A04.bB6Ng01-020A04.g
ACCDH852927DH852928
length2431,131
definitionDH852927|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A04, 5' end.DH852928|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggaggccgtctgggcagtctgctctgaggcagatctagacca
agatgtcttgcctttcaaagccctgaggatgggagacatgtagagattca
cgactttaattccagcacttagaaggtagaggcagtgggatctctgtgag
tttgaggccagccttgactacttagcaagcttcaggtcagccagagctac
aaagtgacacagcaggggcgcgtgcgggggtggggtgggggtg
gaattcaaagatgtctcatgacacataggtgtctcaccaaggacaccact
gggaattctgggatgttcttgcttaggagggacctaaggcgtggaactgt
cctgggacagagagagcctggcactcatgtactctgctggacatggggat
gaggatgctgcatagcgagctgctgagagcagctgatgtgctccaacctg
gcttgcagataaagaaatctgtttgcagaggctgcagctggtccaagtct
atttcgtaagccaagcctcctctccagcccacttcctgccctcttctcct
tccagaaaccatgacagagagtcaaatgggagaatctttggaatgtagaa
gtagagaaatggctttcatgtcttgaaaagatcgctgcatttggactaat
atgtgtcaggctttgcccataaacatcaaaatgcaaaatagacagacagc
acattcttgaatttcctttagattacagagtttttgtttgtgtgttagtt
tagattccagagttaactattggttttcatcaggcctgcaggcatctctt
ctttgaaaggagacacacccctgcggtgtggagaaatacagtgagcagac
acattgctggccctagaggaataattaattgaaaaagactttaaactcta
gtttggaagtgcaacaaaagctttgtatctgacatctgaactatttcaca
atgctgatgatggctgcttatcccaaataggtaatagcttactttgatca
ttttctagattctatgcattgaactgctttcttgagtttttacttaaata
ggcttgctagttgagttatccttggcgtcttcaagaaatacgagtgagca
taaacagctaatgtatgttaggacacacctacgtgagagagccaggtggg
gcatgccaacacctcgtgatccatgatattcagaggacagcttgttcttt
ctaccatgtcttcagttccagtgatgtgagctcaggtaatgtgaagtggc
cctctttacctgctgagcatctcacccaacagaggatagtcttaagtcca
catgcagacgaatgaacagaaaataggctctttggagactaaattcgaac
acgccactcaagcaatggaacttctgatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49353752_49354889
seq2: B6Ng01-020A04.g_67_1197

seq1  GAATTCAAAGATGTCTCATGACACATAGGTGTCTCACCAAGGACACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATGTCTCATGACACATAGGTGTCTCACCAAGGACACCACT  50

seq1  GGGAATTCTGGGATGTTCTTGCTTAGGAGGGACCTAAGGCGTGGAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCTGGGATGTTCTTGCTTAGGAGGGACCTAAGGCGTGGAACTGT  100

seq1  CCTGGGACAGAGAGAGCCTGGCACTCATGTACTCTGCTGGACATGGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACAGAGAGAGCCTGGCACTCATGTACTCTGCTGGACATGGGGAT  150

seq1  GAGGATGCTGCATAGCGAGCTGCTGAGAGCAGCTGATGTGCTCCAACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGCTGCATAGCGAGCTGCTGAGAGCAGCTGATGTGCTCCAACCTG  200

seq1  GCTTGCAGATAAAGAAATCTGTTTGCAGAGGCTGCAGCTGGTCCAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGATAAAGAAATCTGTTTGCAGAGGCTGCAGCTGGTCCAAGTCT  250

seq1  ATTTCGTAAGCCAAGCCTCCTCTCCAGCCCACTTCCTGCCCTCTTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTAAGCCAAGCCTCCTCTCCAGCCCACTTCCTGCCCTCTTCTCCT  300

seq1  TCCAGAAACCATGACAGAGAGTCAAATGGGAGAATCTTTGGAATGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACCATGACAGAGAGTCAAATGGGAGAATCTTTGGAATGTAGAA  350

seq1  GTAGAGAAATGGCTTTCATGTCTTGAAAAGATCGCTGCATTTGGACTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAATGGCTTTCATGTCTTGAAAAGATCGCTGCATTTGGACTAAT  400

seq1  ATGTGTCAGGCTTTGCCCATAAACATCAAAATGCAAAATAGACAGACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAGGCTTTGCCCATAAACATCAAAATGCAAAATAGACAGACAGC  450

seq1  ACATTCTTGAATTTCCTTTAGATTACAGAGTTTTTGTTTGTGTGTTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGAATTTCCTTTAGATTACAGAGTTTTTGTTTGTGTGTTAGTT  500

seq1  TAGATTCCAGAGTTAACTATTGGTTTTCATCAGGCCTGCAGGCATCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCCAGAGTTAACTATTGGTTTTCATCAGGCCTGCAGGCATCTCTT  550

seq1  CTTTGAAAGGAGACACACCCCTGCGGTGTGGAGAAATACAGTGAGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGGAGACACACCCCTGCGGTGTGGAGAAATACAGTGAGCAGAC  600

seq1  ACATTGCTGGCCCTAGAGGAATAATTAATTGAAAAAGACTTTAAACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTGGCCCTAGAGGAATAATTAATTGAAAAAGACTTTAAACTCTA  650

seq1  GTTTGGAAGTGCAACAAAAGCTTTGTATCTGACATCTGAACTATTTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAGTGCAACAAAAGCTTTGTATCTGACATCTGAACTATTTCACA  700

seq1  ATGCTGATGATGGCTGCTTATCCCAAATAGGTAATAGCTTACTTTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATGATGGCTGCTTATCCCAAATAGGTAATAGCTTACTTTGATCA  750

seq1  TTTTCTAGATTCTATGCATTGAACTGCTTCCTTGAGTTTTTACTTAAATA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTCTAGATTCTATGCATTGAACTGCTTTCTTGAGTTTTTACTTAAATA  800

seq1  GGCTTGCTAGTTGAGTTATCCTTGGCGTCTTCAAGAAATACGAGTGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTAGTTGAGTTATCCTTGGCGTCTTCAAGAAATACGAGTGAGCA  850

seq1  TAAACAGCTAATGTATGTTAGGACACACCTACGTGAGAGAGCCAGGTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCTAATGTATGTTAGGACACACCTACGTGAGAGAGCCAGGTGGG  900

seq1  GCATGCCAACACCTCGTGATCCATGATATTCAGAGGACAGCTTGTTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAACACCTCGTGATCCATGATATTCAGAGGACAGCTTGTTCTTT  950

seq1  CTACCATGTCTTCAGTTCCAGTGATGTGAGCTCAGGTAATTGTG-AGTGG  999
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  CTACCATGTCTTCAGTTCCAGTGATGTGAGCTCAGGTAA-TGTGAAGTGG  999

seq1  -CCTCTTTACCTGCTGAGCCATCTCAACCAAACAGAGGATAGTCTTTAAG  1048
       ||||||||||||||||| |||||| ||| |||||||||||||| |||||
seq2  CCCTCTTTACCTGCTGAG-CATCTC-ACCCAACAGAGGATAGTC-TTAAG  1046

seq1  TCCACATGCAGACAGATGAACAGAATATAGGCTC-TTGGAGACTGAACAT  1097
      |||||||||||||  |||||||||| |||||||| |||||||||  | ||
seq2  TCCACATGCAGACGAATGAACAGAAAATAGGCTCTTTGGAGACT--AAAT  1094

seq1  TCGAACACAGCCACTCAAGCAATGTGAACTTCCTTGATGCT  1138
      |||||||| ||||||||||||||| |||||||  |||||||
seq2  TCGAACAC-GCCACTCAAGCAATG-GAACTTC--TGATGCT  1131