BAC Information

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BAC

Clone NameB6Ng01-021B13
Chromosome14 (Build37)
Map Location 16,667,638 - 16,789,166
singlet/doubletdoublet
Overlap geneLOC667205
Upstream geneNek10, Lrrc3b
Downstream gene1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021B13.bB6Ng01-021B13.g
ACCDH853701DH853702
length929905
definitionDH853701|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B13, 5' end.DH853702|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,667,638 - 16,668,346)(16,788,257 - 16,789,166)
sequence
gaattcattctgataagacacacagagtatcggtgtaaatgataggtagg
gattcctaaaaggtaaattagggatccctacagggataagaacagactga
agccaagggagaaaactctgagggtgcaaatgaacacaggcttgggatgc
agtaggggggtacagtcaagctacactcactgatatttgtcaaacacttt
gataaactccaagtcttgcgcgcgctcgactggccaggaagaacgacgct
gcaacaggatccttctgcacacgtttattgggagagcttgattgtagagg
cgaaaagacttcgagcccagaactagtgctgcttttataggcctaggagg
ggcgtgtctcacacccggattggttatgcactaagcctcatttgcatgtt
cctcatctgattggctactctctctcagtaccttacagaacctcattatc
atgcctaggccaggcagtgtctttgcaaaaaactttactgcatatgtaca
cattggttgtttgtccaatcttatgtgtggtggccagcagtagtcagtgc
cactcagcaacggcacatgtggcttcccacatctccccctgtttgtttta
ataaaatgaggctggactaggcctgtgcaattatgcccatccgccgtggc
tcctgttttaggtcgttcctctaatgtcacagccttacccgtcatagggt
aaccctatcgccaccgggccccatgtcttaggttggactgtgcatgagga
aagttgcccgtctctggataccgcagtgctgtgtgacaataactgctaaa
tgacctatgcgaactctgcaaaagaggccagccaaaaatgaattagtggg
gaaatcatgatcaccctattgatgagcaagggctgatcaatgatcgttga
gtctctctcatctaatctcatgctgacta
gaattcatctcttaggtaactcaatctctagcacgggttctgggaaccaa
ttggaaattacattgtgcataagacctcagagttcagagcaagtagagag
gatgagttggatagaagggggtcttgattgaagttacccttgaaactagc
atggctgggtttatctcctatcctatgccttatatagggctagaaacttt
gtctatactttttttttctctcctatttgagatcctatatgccctcccat
gctccagtcagatatcttcgctgaatatgatcagcacaagtttttttaaa
tatgtgaaagcactccataggctccagaagaaaatctggcttgccatcca
ccaggtttatgagcctgctcctctccctaaccccattgctttaaaacatg
tgacaaagaaggattaagagatacaaccataccttctagtcaccatctgc
acccagaactgaggctgttctgtagatttctatatacagatcctgccagg
agagagttgttctcccagagttgctctcactcctgggtccagaggtatga
tagctactttgtctcccataactatccaaagcaggaccagcatggagtgc
acagggcacaggaacagatgaacagccgggacaggatctttctggtccca
tatacgcccagagctaaggttgttccacagccctctgtacacagattcta
ataggagagagctgatctcccaggagtgttgacacagtcttacaggccca
caggagggacaagctccagcaagaaacatcaagactaactacaccagaga
taacggatgtcaaaaggcgagtgcagatacttatcaacagaaacaaaggc
tacttggcatcttcataacccagttctcctaccacagaagtcttggatct
ccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_16667638_16668346
seq2: B6Ng01-021B13.b_45_754

seq1  GAATTCATTCTGATAAGACACACAGAGTAT-GGTGTAAATGATAGGTAGG  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCATTCTGATAAGACACACAGAGTATCGGTGTAAATGATAGGTAGG  50

seq1  GATTCCTAAAAGGTAAATTAGGGATCCCTACAGGGATAAGAACAGACTGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAAAAGGTAAATTAGGGATCCCTACAGGGATAAGAACAGACTGA  100

seq1  AGCCAAGGGAGAAAACTCTGAGGGTGCAAATGAACACAGGCTTGGGATGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGGAGAAAACTCTGAGGGTGCAAATGAACACAGGCTTGGGATGC  150

seq1  AGTAGGGGGGTACAGTCAAGCTACACTCACTGATATTTGTCAAACACTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGGGGTACAGTCAAGCTACACTCACTGATATTTGTCAAACACTTT  200

seq1  GATAAACTCCAAGTCTTGCGCGCGCTCGACTGGCCAGGAAGAACGACGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTCCAAGTCTTGCGCGCGCTCGACTGGCCAGGAAGAACGACGCT  250

seq1  GCAACAGGATCCTTCTGCACACGTTTATTGGGAGAGCTTGATTGTAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGATCCTTCTGCACACGTTTATTGGGAGAGCTTGATTGTAGAGG  300

seq1  CGAAAAGACTTCGAGCCCAGAACTAGTGCTGCTTTTATAGGCCTAGGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGACTTCGAGCCCAGAACTAGTGCTGCTTTTATAGGCCTAGGAGG  350

seq1  GGCGTGTCTCACACCCGGATTGGTTATGCACTAAGCCTCATTTGCATGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTCTCACACCCGGATTGGTTATGCACTAAGCCTCATTTGCATGTT  400

seq1  CCTCATCTGATTGGCTACTCTCTCTCAGTACCTTACAGAACCTCATTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGATTGGCTACTCTCTCTCAGTACCTTACAGAACCTCATTATC  450

seq1  ATGCCTAGGCCAGGCAGTGTCTTTGCAAAAAACTTTACTGCATATGTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGGCCAGGCAGTGTCTTTGCAAAAAACTTTACTGCATATGTACA  500

seq1  CATTGGTTGTTTGTCCAATCTTATGTGTGGTGGCCAGCAGTAGTCAGTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTGTTTGTCCAATCTTATGTGTGGTGGCCAGCAGTAGTCAGTGC  550

seq1  CACTCAGCAACGGCACATGTGGCTTCCCACATCTCCCCCTGTTTGTTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAACGGCACATGTGGCTTCCCACATCTCCCCCTGTTTGTTTTA  600

seq1  ATAAAATGAGGCTGGACTAGGCCTGTGCAATTATGCCCATCCGCCGTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAGGCTGGACTAGGCCTGTGCAATTATGCCCATCCGCCGTGGC  650

seq1  TCCTGTTTTAGGTCGTTCCTCTAATGTCACAGCCTTACCCGTCATAGGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTAGGTCGTTCCTCTAATGTCACAGCCTTACCCGTCATAGGGT  700

seq1  AACCCTATCG  709
      ||||||||||
seq2  AACCCTATCG  710

seq1: chr14_16788257_16789166
seq2: B6Ng01-021B13.g_67_971 (reverse)

seq1  GTTGGAGTATCCAGGACTTGCTGTGGTAGGAGAACTGGGTTCTGATGATG  50
      ||||||| ||||| ||||| ||||||||||||||||||||| ||| ||||
seq2  GTTGGAG-ATCCAAGACTT-CTGTGGTAGGAGAACTGGGTTATGAAGATG  48

seq1  CCAAGTAGCCTTTGTTTCTGTTGATAAGTTTCCTGCACTCGCCTTTTGAC  100
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  CCAAGTAGCCTTTGTTTCTGTTGATAAGTAT-CTGCACTCGCCTTTTGAC  97

seq1  ATCCTGTTATCTCTGGTGTTAGTTAGTCTTGATGTTTCTTGCTGGAGCTT  150
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCC-GTTATCTCTGGTG-TAGTTAGTCTTGATGTTTCTTGCTGGAGCTT  145

seq1  GTCCCTCCTGTGGGCCTGTAAGACTGTGTCAACACTCCTGGGAGATCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCTGTGGGCCTGTAAGACTGTGTCAACACTCCTGGGAGATCAGC  195

seq1  TCTCTCCTATTAGAATCTGTGTACAGAGGGCTGTGGAACAACCTTAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTATTAGAATCTGTGTACAGAGGGCTGTGGAACAACCTTAGCTC  245

seq1  TGGGCGTATATGGGACCAGAAAGATCCTGTCCCGGCTGTTCATCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTATATGGGACCAGAAAGATCCTGTCCCGGCTGTTCATCTGTTCC  295

seq1  TGTGCCCTGTGCACTCCATGCTGGTCCTGCTTTGGATAGTTATGGGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGTGCACTCCATGCTGGTCCTGCTTTGGATAGTTATGGGAGAC  345

seq1  AAAGTAGCTATCATACCTCTGGACCCAGGAGTGAGAGCAACTCTGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCTATCATACCTCTGGACCCAGGAGTGAGAGCAACTCTGGGAGA  395

seq1  ACAACTCTCTCCTGGCAGGATCTGTATATAGAAATCTACAGAACAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTCTCCTGGCAGGATCTGTATATAGAAATCTACAGAACAGCCTC  445

seq1  AGTTCTGGGTGCAGATGGTGACTAGAAGGTATGGTTGTATCTCTTAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGGTGCAGATGGTGACTAGAAGGTATGGTTGTATCTCTTAATCC  495

seq1  TTCTTTGTCACATGTTTTAAAGCAATGGGGTTAGGGAGAGGAGCAGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCACATGTTTTAAAGCAATGGGGTTAGGGAGAGGAGCAGGCTC  545

seq1  ATAAACCTGGTGGATGGCAAGCCAGATTTTCTTCTGGAGCCTATGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTGGTGGATGGCAAGCCAGATTTTCTTCTGGAGCCTATGGAGTG  595

seq1  CTTTCACATATTTAAAAAAACTTGTGCTGATCATATTCAGCGAAGATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACATATTTAAAAAAACTTGTGCTGATCATATTCAGCGAAGATATC  645

seq1  TGACTGGAGCATGGGAGGGCATATAGGATCTCAAATAGGAGAGAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAGCATGGGAGGGCATATAGGATCTCAAATAGGAGAGAAAAAAA  695

seq1  AAGTATAGACAAAGTTTCTAGCCCTATATAAGGCATAGGATAGGAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGACAAAGTTTCTAGCCCTATATAAGGCATAGGATAGGAGATAA  745

seq1  ACCCAGCCATGCTAGTTTCAAGGGTAACTTCAATCAAGACCCCCTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCATGCTAGTTTCAAGGGTAACTTCAATCAAGACCCCCTTCTAT  795

seq1  CCAACTCATCCTCTCTACTTGCTCTGAACTCTGAGGTCTTATGCACAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCATCCTCTCTACTTGCTCTGAACTCTGAGGTCTTATGCACAATG  845

seq1  TAATTTCCAATTGGTTCCCAGAACCCGTGCTAGAGATTGAGTTACCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAATTTCCAATTGGTTCCCAGAACCCGTGCTAGAGATTGAGTTACCTAAG  895

seq1  AGATGAATTC  910
      ||||||||||
seq2  AGATGAATTC  905