BAC Information

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BAC

Clone NameB6Ng01-021F12
Chromosome14 (Build37)
Map Location 58,250,192 - 58,420,677
singlet/doubletdoublet
Overlap geneXpo4, Lats2, Sap18
Upstream geneParp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2
Downstream geneF630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021F12.bB6Ng01-021F12.g
ACCDH853875DH853876
length8841,171
definitionDH853875|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F12, 5' end.DH853876|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,419,788 - 58,420,677)(58,250,192 - 58,251,410)
sequence
gaattcaagtgaagccagatctgaatataagcctatagctaccactactg
tcactaaagacagacacgaaaggcattatcccaaagccaggcatggtgac
atgtgcttataattccaacacagctgcatcttatcagaaagagaatatat
atgtgtgttgctggggaggggacctgatttgcaaaatgcagaaataacag
gaattaaaataacaagtcacctaccgatatccaggtcttttaagatccat
aaaaacaattgcaaaattgaagtgtgtgcccttctttctggcttctgggt
agacttccttcactaaactagtcagttctttcaaggttgcatccatcctg
aattttttgaagagataattatgatgaatattagtataacaaggacatta
aaaacagcaagttgtgcatccaatgagtcattcgtagtccagtgctgcac
actatatgatggcaagatggcctggcagggaagtcagtttgctgtacaat
cctggcaacctgtgtcaacccaaataagggtcaaaaggagagaaccaact
tccacagttgtcttctgacctccacaaatcaagcatctcatggaatgtgt
gcacgcgcgcgcacacacacacacacccctaataataacaaagaaaaaat
tgccttgaatatttcctgagctgtccttcatgggggaaaacaacatcaat
aaaataaaaatcctgctacaagggcttaaagctaagccttgttctgagac
tacataacatcatctggctcagccatctacttatctgcagtaccagtaca
attattcactacactaattactatttttttaagatacacaatctccatac
attacagcatctgaaagtggagttgcatctagaa
gaattcacagtatctattaaaggtgccttctataataatgaaaattctat
ggcgactcttaacttagtttttgtgcacacatatacacttttgttaatat
ttactggctgtacctgagggttgaaccaaggtcattacaatctttagaca
agtgttcctcatcagaaatgaacttagccctgctcccccgccacactcgt
ttacttcaaaatatacagtttttttaatacaaaagttcacttatccccaa
atcttcagaaaaataagtgcctctttaaatacctctgtgggactcaggaa
aacagtctgagaaattggacacaagcacctcatatagagagcaatttgtc
cctgtctttactgtacacagggatttcaaacatttatcaagttaagtaat
cctcactttaaaatggctttttttttttttaaagtggagattaaagtgtc
aatcagccaggcacagaggcacagtcctccaaatcctcattactcggagg
ctaaggctaggggtcatttgagaccagcttaaaaaacgatatagtctgac
tctgcctcaaaaatattccccaaaaagctaaaaagaaaattaaagcacta
gccatcaatacttcacagatacattaaaataatctcatacatctttaagt
gtcattatatgcataaatgcacatatatacctttttgtatacttagggga
aatatactaaataaagtaataagattatattaaatttaatacagtttgga
aaaagacattaagtcataagacctaataactttctgagattctgtaattc
tgaagacaattttactagcctgtatttctgtaactcttagccttacttct
catccatcctttctattaatatctcactgactatatattatgaaaaaata
aaaaatttgaaaacatgtctaaatcagaaaactatctcagatattcatca
ctgaatacatttacatattacttcacttttgaaatcagaagcatttgtta
aatgcaacttgtcacattctacaaaaatgcgctacatacttttcatacgt
attacgacttaccaagttgaattcgggtacttatgccaaatttgaacatg
ggcattccgatctgaacaagcaataatatagacaattcagaagatgcttc
ttggaatattttccagctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_58419788_58420677
seq2: B6Ng01-021F12.b_43_926 (reverse)

seq1  TTCTAGGATGC-ACTCCACTTTCAGATGCTGTAATGTATGGGAGATTGTG  49
      ||||| ||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TTCTA-GATGCAACTCCACTTTCAGATGCTGTAATGTAT-GGAGATTGTG  48

seq1  TATCTT-AGAAAATAGTTATTTTGTGTAGTTGAATAATTTGTACTGGTTA  98
      |||||| | ||||||| || || |||||| ||||||| ||||||||| ||
seq2  TATCTTAAAAAAATAG-TAATTAGTGTAG-TGAATAA-TTGTACTGG-TA  94

seq1  CTTGCAGATAAGTAGATGGCTGAGCCAGATGATGTTATGTAGTCTCAGAA  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGCAGATAAGTAGATGGCTGAGCCAGATGATGTTATGTAGTCTCAGAA  143

seq1  CAAGGCCTTAGCCTTAAGCCCTTGTAGCAGGATTTTTATTTTATTGATGT  198
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAGG-CTTAGCTTTAAGCCCTTGTAGCAGGATTTTTATTTTATTGATGT  192

seq1  TGTTTTCCCCCATGGAGGACAGCTCAGGAAATATTCAAGGCAATTTTTTC  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCCCCATGAAGGACAGCTCAGGAAATATTCAAGGCAATTTTTTC  242

seq1  TTTGTTATTATTAGGGGTGTGTGTGTGTGTGCGCGCGCGTGCACACATTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTATTAGGGGTGTGTGTGTGTGTGCGCGCGCGTGCACACATTC  292

seq1  CATGAGATGCTTGATTTGTGGAGGTCAGAAGACAACTGTGGAAGTTGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATGCTTGATTTGTGGAGGTCAGAAGACAACTGTGGAAGTTGGTT  342

seq1  CTCTCCTTTTGACCCTTATTTGGGTTGACACAGGTTGCCAGGATTGTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTTGACCCTTATTTGGGTTGACACAGGTTGCCAGGATTGTACA  392

seq1  GCAAACTGACTTCCCTGCCAGGCCATCTTGCCATCATATAGTGTGCAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGACTTCCCTGCCAGGCCATCTTGCCATCATATAGTGTGCAGCA  442

seq1  CTGGACTACGAATGACTCATTGGATGCACAACTTGCTGTTTTTAATGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTACGAATGACTCATTGGATGCACAACTTGCTGTTTTTAATGTCC  492

seq1  TTGTTATACTAATATTCATCATAATTATCTCTTCAAAAAATTCAGGATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATACTAATATTCATCATAATTATCTCTTCAAAAAATTCAGGATGG  542

seq1  ATGCAACCTTGAAAGAACTGACTAGTTTAGTGAAGGAAGTCTACCCAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACCTTGAAAGAACTGACTAGTTTAGTGAAGGAAGTCTACCCAGAA  592

seq1  GCCAGAAAGAAGGGCACACACTTCAATTTTGCAATTGTTTTTATGGATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGAAGGGCACACACTTCAATTTTGCAATTGTTTTTATGGATCT  642

seq1  TAAAAGACCTGGATATCGGTAGGTGACTTGTTATTTTAATTCCTGTTATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACCTGGATATCGGTAGGTGACTTGTTATTTTAATTCCTGTTATT  692

seq1  TCTGCATTTTGCAAATCAGGTCCCCTCCCCAGCAACACACATATATATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTTTGCAAATCAGGTCCCCTCCCCAGCAACACACATATATATTC  742

seq1  TCTTTCTGATAAGATGCAGCTGTGTTGGAATTATAAGCACATGTCACCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGATAAGATGCAGCTGTGTTGGAATTATAAGCACATGTCACCAT  792

seq1  GCCTGGCTTTGGGATAATGCCTTTCGTGTCTGTCTTTAGTGACAGTAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTTTGGGATAATGCCTTTCGTGTCTGTCTTTAGTGACAGTAGTG  842

seq1  GTAGCTATAGGCTTATATTCAGATCTGGCTTCACTTGAATTC  890
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATAGGCTTATATTCAGATCTGGCTTCACTTGAATTC  884

seq1: chr14_58250192_58251410
seq2: B6Ng01-021F12.g_65_1235

seq1  GAATTCACAGTATCTATTAAAGGTGCCTTCTATAATAATGAAAATTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTATCTATTAAAGGTGCCTTCTATAATAATGAAAATTCTAT  50

seq1  GGCGACTCTTAACTTAGTTTTTGTGCACACATATACACTTTTGTTAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTCTTAACTTAGTTTTTGTGCACACATATACACTTTTGTTAATAT  100

seq1  TTACTGGCTGTACCTGAGGGTTGAACCAAGGTCATTACAATCTTTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCTGTACCTGAGGGTTGAACCAAGGTCATTACAATCTTTAGACA  150

seq1  AGTGTTCCTCATCAGAAATGAACTTAGCCCTGCTCCCCCGCCACACTCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCTCATCAGAAATGAACTTAGCCCTGCTCCCCCGCCACACTCGT  200

seq1  TTACTTCAAAATATACAGTTTTTTTAATACAAAAGTTCACTTATCCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAAAATATACAGTTTTTTTAATACAAAAGTTCACTTATCCCCAA  250

seq1  ATCTTCAGAAAAATAAGTGCCTCTTTAAATACCTCTGTGGGACTCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGAAAAATAAGTGCCTCTTTAAATACCTCTGTGGGACTCAGGAA  300

seq1  AACAGTCTGAGAAATTGGACACAAGCACCTCATATAGAGAGCAATTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTGAGAAATTGGACACAAGCACCTCATATAGAGAGCAATTTGTC  350

seq1  CCTGTCTTTACTGTACACAGGGATTTCAAACATTTATCAAGTTAAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTACTGTACACAGGGATTTCAAACATTTATCAAGTTAAGTAAT  400

seq1  CCTCACTTTAAAATGGCTTTTTTTTTTTTTAAAGTGGAGATTAAAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTTAAAATGGCTTTTTTTTTTTTTAAAGTGGAGATTAAAGTGTC  450

seq1  AATCAGCCAGGCACAGAGGCACAGTCCTCCAAATCCTCATTACTCGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCAGGCACAGAGGCACAGTCCTCCAAATCCTCATTACTCGGAGG  500

seq1  CTAAGGCTAGGGGTCATTTGAGACCAGCTTAAAAAACGATATAGTCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTAGGGGTCATTTGAGACCAGCTTAAAAAACGATATAGTCTGAC  550

seq1  TCTGCCTCAAAAATATTCCCCAAAAAGCTAAAAAGAAAATTAAAGCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAAAAATATTCCCCAAAAAGCTAAAAAGAAAATTAAAGCACTA  600

seq1  GCCATCAATACTTCACAGATACATTAAAATAATCTCATACATCTTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAATACTTCACAGATACATTAAAATAATCTCATACATCTTTAAGT  650

seq1  GTCATTATATGCATAAATGCACATATATACCTTTTTGTATACTTAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATATGCATAAATGCACATATATACCTTTTTGTATACTTAGGGGA  700

seq1  AATATACTAAATAAAGTAATAAGATTATATTAAA-TTAATACAGTTTGGA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATATACTAAATAAAGTAATAAGATTATATTAAATTTAATACAGTTTGGA  750

seq1  AAAAGACATTAAGTCATAAGACCTAATAAC-TTCTGAGATTCTGTAATTC  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAGACATTAAGTCATAAGACCTAATAACTTTCTGAGATTCTGTAATTC  800

seq1  TGAAGACAATTTTACTAGCCTGTA-TTCTGTAACTCTTAGCCTTACTTCT  847
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGAAGACAATTTTACTAGCCTGTATTTCTGTAACTCTTAGCCTTACTTCT  850

seq1  CATCCATCCTTTCTAATTAATATCTCACTGACTATATATTATGAAAAAAA  897
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  CATCCATCCTTTCT-ATTAATATCTCACTGACTATATATTATG-AAAAAA  898

seq1  TAAAAAATTTGAAAACATGTCTAAATCAAGAAAACTAATCTCAGATATCC  947
      ||||||||||||||||||||||||||| |||||||| ||||||||||| |
seq2  TAAAAAATTTGAAAACATGTCTAAATC-AGAAAACT-ATCTCAGATATTC  946

seq1  ATCACTGAATACAATTTACATATTAACTTCACTTTTGAAAATCCAGAAGC  997
      |||||||||||| ||||||||||| |||||||||||||||   |||||||
seq2  ATCACTGAATAC-ATTTACATATT-ACTTCACTTTTGAAA--TCAGAAGC  992

seq1  ATTTGTTAAATGCAAACTGTCAACATTCTTACAAATAATGCGCTACAATA  1047
      |||||||||||||||  |||| |||||| |||||| |||||||||| |||
seq2  ATTTGTTAAATGCAACTTGTC-ACATTC-TACAAA-AATGCGCTAC-ATA  1038

seq1  CTTTTCCATACGTAATTTACGACTTACCACAGGTTGATTTCTGGGTACTT  1097
      ||||| ||||||||  |||||||||||  || ||||| ||| ||||||||
seq2  CTTTT-CATACGTA--TTACGACTTAC--CAAGTTGAATTC-GGGTACTT  1082

seq1  AAAGTGGCATATTTTGAAACTATGGTCATATTCAGATTCTTAGTACAATG  1147
      |   || || | ||||||   |||| |  |||| || |||  | |||| |
seq2  A---TGCCA-AATTTGAA--CATGGGC--ATTCCGA-TCT--GAACAA-G  1120

seq1  CCTAATTAATTATTAGAACATATTCACAATAAAGATTTGCTCTTCTATGA  1197
      |   | ||||   ||| ||| |||||     |||||     |||||  | 
seq2  C---AATAAT--ATAG-ACA-ATTCA----GAAGAT----GCTTCTTGG-  1154

seq1  AATAAATATTTTCCAAGCTCAT  1219
          |||||||||| |||||||
seq2  ----AATATTTTCC-AGCTCAT  1171