BAC Information

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BAC

Clone NameB6Ng01-022J09
Chromosome14 (Build37)
Map Location 108,963,974 - 109,045,220
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022J09.bB6Ng01-022J09.g
ACCDH854755DH854756
length963477
definitionDH854755|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J09, 5' end.DH854756|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,044,258 - 109,045,220)(108,963,974 - 108,964,450)
sequence
gaattcatcaagaaaaacactgtattataatgactctttagaactacaca
gagaaatttgaagtcttaagctgtatattactgtctacagttcatactgt
ggtctggaaactattgcaactttggatgtgtcaatccaatgaccacattt
cattctgatggcatttctccatctctgtagacagaccagaactcgaagtt
gtaagtacaaataagaaggtgacaatggacaggtttggtaaagagaaagt
ttccaatcatagcaaaggaagaaattaaaaccatgagtatgtagtatcac
acagaagaaagtcttatagaatatatataaaattagcaaggaagctctaa
caggaatgctattgtcaaggactataatgatacccacagttgggacctga
gagtttacgattaaataatataaattcttagtcaaataaggtgtaacatt
atgtatttatagtgaatggcatgaagattacaatgaagcacaattttgag
acccagcccatcttcacacattgtgaaatgcataagattatagtatttac
taactgacataaatccataaaatatattttagaatgcctatggcagccag
tattgttgatatacttgtgaaggcatttttaatatcatccctgaagcaaa
aaataaaggaccacatctattttgaatagattcaaattctaatataatta
tttttatcataattaagaagtgtctgacttcaaattgattggttaaatta
taatttctctgaatatataacaaaagactgaagtgaaggttttgtcagta
ttgtttctaccactttatattttggttcatgtcttagttaggatttttct
ttcctgagattaaacgttgtgacccaagcaacctagggatgaaaagactt
ttacttttcgcttcttctttagttcccttactgaagagaatcatgtgtga
actcaaagagtgc
gaattctcactgaggaatactaaaggactgagaagcaccagaaaaattgt
tcaacatccttaatcaacaggaaattcaaatcaaaacaacactgagattc
catctcacacctgtcagaatagctaggatcaaaaattcaggtgatagcag
atgctggtgaggatgtggagaaaaaggagcactctgtcattgctggtgag
attgcccgcttttacaaccactctggaagtccgtctggaggttcctcaga
aaattggacataatactactggaggccagggaatgtgtcaaaagtgggcc
tagttggccatcattgggatagcatttaaaatgtaaatgaagaaaatatc
aaatttaaaaaatgagggaaaaaagaaatataaatgaaaaaatatcgaat
aaaaaattcgggtttggaatatatacatacatatatatatatatatatat
atatatatatatatatatatatctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109044258_109045220
seq2: B6Ng01-022J09.b_42_1004 (reverse)

seq1  GCACTCTTTGAGTTCCCACACTGATTCTCTTCAGTAATGGAACTAAAGTA  50
      ||||||||||||||| |||| |||||||||||||||| |||||||||| |
seq2  GCACTCTTTGAGTTCACACA-TGATTCTCTTCAGTAAGGGAACTAAAGAA  49

seq1  GAAGCGAAAAAGTAAAAGTCTTTTCATCCCTAGGTTGCTTGGGTCACAAC  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCG-AAAAGTAAAAGTCTTTTCATCCCTAGGTTGCTTGGGTCACAAC  98

seq1  GTTTAATCTCAGG-AAGAAAAATCCTAACTAAGACATGAACCAAAATATA  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTTAATCTCAGGAAAGAAAAATCCTAACTAAGACATGAACCAAAATATA  148

seq1  AAGTGGTAGAAACAATACTGACAAAACCTTCACTTCAGTCTTTTGTTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTAGAAACAATACTGACAAAACCTTCACTTCAGTCTTTTGTTATA  198

seq1  TATTCAGAGAAATTATAATTTAACCAATCAATTTGAAGTCAGACACTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGAAATTATAATTTAACCAATCAATTTGAAGTCAGACACTTCT  248

seq1  TAATTATGATAAAAATAATTATATTAGAATTTGAATCTATTC-AAATAGA  298
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATTATGATAAAAATAATTATATTAGAATTTGAATCTATTCAAAATAGA  298

seq1  TGTGGTCCTTTATTTTTTGCTTCAGGGATGATATTAAAAATGCCTTCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCTTTATTTTTTGCTTCAGGGATGATATTAAAAATGCCTTCACA  348

seq1  AGTATATCAACAATACTGGCTGCCATAGGCATTCTAAAATATATTTTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCAACAATACTGGCTGCCATAGGCATTCTAAAATATATTTTATG  398

seq1  GATTTATGTCAGTTAGTAAATACTATAATCTTATGCATTTCACAATGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGTCAGTTAGTAAATACTATAATCTTATGCATTTCACAATGTGT  448

seq1  GAAGATGGGCTGGGTCTCAAAATTGTGCTTCATTGTAATCTTCATGCCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGCTGGGTCTCAAAATTGTGCTTCATTGTAATCTTCATGCCAT  498

seq1  TCACTATAAATACATAATGTTACACCTTATTTGACTAAGAATTTATATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATAAATACATAATGTTACACCTTATTTGACTAAGAATTTATATTA  548

seq1  TTTAATCGTAAACTCTCAGGTCCCAACTGTGGGTATCATTATAGTCCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCGTAAACTCTCAGGTCCCAACTGTGGGTATCATTATAGTCCTTG  598

seq1  ACAATAGCATTCCTGTTAGAGCTTCCTTGCTAATTTTATATATATTCTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCATTCCTGTTAGAGCTTCCTTGCTAATTTTATATATATTCTAT  648

seq1  AAGACTTTCTTCTGTGTGATACTACATACTCATGGTTTTAATTTCTTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTCTTCTGTGTGATACTACATACTCATGGTTTTAATTTCTTCCT  698

seq1  TTGCTATGATTGGAAACTTTCTCTTTACCAAACCTGTCCATTGTCACCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGATTGGAAACTTTCTCTTTACCAAACCTGTCCATTGTCACCTT  748

seq1  CTTATTTGTACTTACAACTTCGAGTTCTGGTCTGTCTACAGAGATGGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGTACTTACAACTTCGAGTTCTGGTCTGTCTACAGAGATGGAGA  798

seq1  AATGCCATCAGAATGAAATGTGGTCATTGGATTGACACATCCAAAGTTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCAGAATGAAATGTGGTCATTGGATTGACACATCCAAAGTTGC  848

seq1  AATAGTTTCCAGACCACAGTATGAACTGTAGACAGTAATATACAGCTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTCCAGACCACAGTATGAACTGTAGACAGTAATATACAGCTTAA  898

seq1  GACTTCAAATTTCTCTGTGTAGTTCTAAAGAGTCATTATAATACAGTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAATTTCTCTGTGTAGTTCTAAAGAGTCATTATAATACAGTGTT  948

seq1  TTTCTTGATGAATTC  963
      |||||||||||||||
seq2  TTTCTTGATGAATTC  963

seq1: chr14_108963974_108964450
seq2: B6Ng01-022J09.g_69_545

seq1  GAATTCTCACTGAGGAATACTAAAGGACTGAGAAGCACCAGAAAAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGAGGAATACTAAAGGACTGAGAAGCACCAGAAAAATTGT  50

seq1  TCAACATCCTTAATCAACAGGAAATTCAAATCAAAACAACACTGAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCTTAATCAACAGGAAATTCAAATCAAAACAACACTGAGATTC  100

seq1  CATCTCACACCTGTCAGAATAGCTAGGATCAAAAATTCAGGTGATAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACACCTGTCAGAATAGCTAGGATCAAAAATTCAGGTGATAGCAG  150

seq1  ATGCTGGTGAGGATGTGGAGAAAGAGGAGCACTCTGTCATTGCTGGTGAG  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGCTGGTGAGGATGTGGAGAAAAAGGAGCACTCTGTCATTGCTGGTGAG  200

seq1  ATTGCAAGCTTTTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGA  250
      |||||  |||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTGCCCGCTTTTACAACCACTCTGGAAGTCCGTCTGGAGGTTCCTCAGA  250

seq1  AAATTGGACATAGTACTACTGGAGGCCAGCATATGTAGCAGAAGTTGGCC  300
      |||||||||||| ||||||||||||||||   ||||  || |||| ||||
seq2  AAATTGGACATAATACTACTGGAGGCCAGGGAATGTGTCAAAAGTGGGCC  300

seq1  TAGTTGGCCATCATTGGGATAGCATTTAAAATGTAAATGAAGAAAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGCCATCATTGGGATAGCATTTAAAATGTAAATGAAGAAAATATC  350

seq1  AAATTTAAAAAATGAGGGAAAAAAGAAATATAAATGAAAAAATATCTAAT  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATTTAAAAAATGAGGGAAAAAAGAAATATAAATGAAAAAATATCGAAT  400

seq1  AAAAAATTTGGTTTTGGAATATATACATACATATATATATATATATATAT  450
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCGGGTTTGGAATATATACATACATATATATATATATATATAT  450

seq1  ATATATATATATATATATATATATATA  477
      |||||||||||||||||||||| ||||
seq2  ATATATATATATATATATATATCTATA  477