BAC Information

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BAC

Clone NameB6Ng01-022P07
Chromosome14 (Build37)3 (Build37)
Map Location 123,552,372 - 123,553,48641,059,373 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTm9sf2, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022P07.bB6Ng01-022P07.g
ACCDH855015DH855016
length1,108366
definitionDH855015|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P07, 5' end.DH855016|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,552,372 - 123,553,486)(41,059,373 - 41,059,737)
sequence
gaattccccaagtcagcacagatcagacagactcacaatgtgctgcttat
atgtaggtgattgcctttcagagcctggagaggcttgcttttcccttagt
ggagctagatgtgagaaaatgagccagagagtccaacaaagtagggcctg
tcatttcaattaccattttgtttgttgtcttcctacgtgtttctcttctg
gtgatatatcacacatgtttataatttatggagagagaagaaattacatg
ccacatacaacaatctggtaaatatttatgaatattctgcttcttaatgt
gggagtgtgaaaataacaactcctgattgcatattagcaattaatataag
ccttgagaagcagacagaagatccatagtcctaaaacaacagtctttgct
tctgcacagggtgctcttgttaaattgtctttcttctttttctgacatgc
ttgactccctttggtttcattactttcctaataaaccctgaagctgtgct
tccacagaacccatacgctctcatcagggacacagtgaaatgctgtctac
attctgtgtggaatggacagcaagaaagaaaagcaccccctttgcaattt
taattagaatttggggctctgcgggctggttagccatgttagagttagag
agggctatctgaagaagccatttctgaccctcctatggtccaggcagttt
gcttagattggtggccacagcttgcacctccagctctgcacagtcatatg
gagcacacagcacttcagtcattaaaaagagtggatgctgaatgcagtag
catcccacatttggccaaagggtgccctttgtctgtggttagtatcatta
tctgaataactgagacattacatagtgaatatcccactgtcatcagggta
gcattgccctttggatggaccctcagaactccagagtgtcttaccaggaa
gggtaggactgatggcattcatatcagtgatcacatgaaaaggatttctg
gcttctctactgattttcactctaagagtcatctcatgcaataacctgca
gagtatggaccttgggttctttgtttgctccacaaccgatttctttcaat
gcactcct
gaattctttgttcacttctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgatggtgtcttttgccttgcagaagctttgtagtttcat
gaggtcccatttgtgaattcttgatcttacagcacaagccattgctgttc
tattcaggaattttccccctgtgccaatatcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttcctcaat
ccacttagatttgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123552372_123553486
seq2: B6Ng01-022P07.b_45_1152

seq1  GAATTCCCCAAGTCAGCACAGATCAGACAGACTCACAATGTGCTGCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAGTCAGCACAGATCAGACAGACTCACAATGTGCTGCTTAT  50

seq1  ATGTAGGTGATTGCCTTTCAGAGCCTGGAGAGGCTTGCTTTTCCCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTGATTGCCTTTCAGAGCCTGGAGAGGCTTGCTTTTCCCTTAGT  100

seq1  GGAGCTAGATGTGAGAAAATGAGCCAGAGAGTCCAACAAAGTAGGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGATGTGAGAAAATGAGCCAGAGAGTCCAACAAAGTAGGGCCTG  150

seq1  TCATTTCAATTACCATTTTGTTTGTTGTCTTCCTACGTGTTTCTCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAATTACCATTTTGTTTGTTGTCTTCCTACGTGTTTCTCTTCTG  200

seq1  GTGATATATCACACATGTTTATAATTTATGGAGAGAGAAGAAATTACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATATCACACATGTTTATAATTTATGGAGAGAGAAGAAATTACATG  250

seq1  CCACATACAACAATCTGGTAAATATTTATGAATATTCTGCTTCTTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACAACAATCTGGTAAATATTTATGAATATTCTGCTTCTTAATGT  300

seq1  GGGAGTGTGAAAATAACAACTCCTGATTGCATATTAGCAATTAATATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTGAAAATAACAACTCCTGATTGCATATTAGCAATTAATATAAG  350

seq1  CCTTGAGAAGCAGACAGAAGATCCATAGTCCTAAAACAACAGTCTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAAGCAGACAGAAGATCCATAGTCCTAAAACAACAGTCTTTGCT  400

seq1  TCTGCACAGGGTGCTCTTGTTAAATTGTCTTTCTTCTTTTTCTGACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGGGTGCTCTTGTTAAATTGTCTTTCTTCTTTTTCTGACATGC  450

seq1  TTGACTCCCTTTGGTTTCATTACTTTCCTAATAAACCCTGAAGCTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCCTTTGGTTTCATTACTTTCCTAATAAACCCTGAAGCTGTGCT  500

seq1  TCCACAGAACCCATACGCTCTCATCAGGGACACAGTGAAATGCTGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAACCCATACGCTCTCATCAGGGACACAGTGAAATGCTGTCTAC  550

seq1  ATTCTGTGTGGAATGGACAGCAAGAAAGAAAAGCACCCCCTTTGCAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTGGAATGGACAGCAAGAAAGAAAAGCACCCCCTTTGCAATTT  600

seq1  TAATTAGAATTTGGGGCTCTGCGGGCTGGTTAGCCATGTTAGAGTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAATTTGGGGCTCTGCGGGCTGGTTAGCCATGTTAGAGTTAGAG  650

seq1  AGGGCTATCTGAAGAAGCCATTTCTGACCCTCCTATGGTCCAGGCAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATCTGAAGAAGCCATTTCTGACCCTCCTATGGTCCAGGCAGTTT  700

seq1  GCTTAGATTGGTGGCCACAGCTTGCACCTCCAGCTCTGCACAGTCATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGATTGGTGGCCACAGCTTGCACCTCCAGCTCTGCACAGTCATATG  750

seq1  GAGCACACAGCACTTCAGTCATTAAAAAGAGTGGATGCTGAATGCAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACAGCACTTCAGTCATTAAAAAGAGTGGATGCTGAATGCAGTAG  800

seq1  CATCCCACATTTGGCCAAAGGGTGCCCTTTGTCTGTGGTTAGTATCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACATTTGGCCAAAGGGTGCCCTTTGTCTGTGGTTAGTATCATTA  850

seq1  TCTGAATAGCTGAGAACATTACATAGTGAATATCCCACTTGTCATCAGGG  900
      |||||||| ||||| ||||||||||||||||||||||| |||||||||||
seq2  TCTGAATAACTGAG-ACATTACATAGTGAATATCCCAC-TGTCATCAGGG  898

seq1  TAGCAATTGCCCTTTGGAT-GACCCTCAGAACTCCAGAGTGTCCTTACCA  949
      |||| |||||||||||||| |||||||||||||||||||||| |||||||
seq2  TAGC-ATTGCCCTTTGGATGGACCCTCAGAACTCCAGAGTGT-CTTACCA  946

seq1  GG-AGGGTAGGACTGATGCCA-TCATATCAGTGATCACATGAAAAGGATC  997
      || ||||||||||||||| || ||||||||||||||||||||||||||| 
seq2  GGAAGGGTAGGACTGATGGCATTCATATCAGTGATCACATGAAAAGGATT  996

seq1  TCTGGCTTCCCTACTGGTTTTCCACTCT-AGAGTCATCTACATGCAATAA  1046
      ||||||||| |||||| |||| |||||| |||||||||| ||||||||||
seq2  TCTGGCTTCTCTACTGATTTT-CACTCTAAGAGTCATCT-CATGCAATAA  1044

seq1  CCTGCAAGAGTATTGAACCCTTGGTTTCTTTGTTTGCTCTCACAACCGAT  1096
      ||||| ||||||| ||  |||||| |||||||||||||| ||||||||||
seq2  CCTGC-AGAGTATGGA--CCTTGGGTTCTTTGTTTGCTC-CACAACCGAT  1090

seq1  TTCTTTTCAATGCACTCCT  1115
      ||| |||||||||||||||
seq2  TTC-TTTCAATGCACTCCT  1108

seq1: chr3_41059373_41059737
seq2: B6Ng01-022P07.g_70_434 (reverse)

seq1  GGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGA  50
      ||||||||||||||||||  |||||| |||||||||||||||||||||||
seq2  GGTCAAATCTAAGTGGATTGAGGAACTCCACATAAAACCAGAGACACTGA  50

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGG  100
      ||||||||||||||||||| ||||||||||| |||||||| | |||||||
seq2  AACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATTGGCACAGGG  100

seq1  GAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  150
      | |||||||||| ||||||||||||||||||||||||||||||  |||||
seq2  GGAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAAT  150

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  200
        |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCACAAATGGGACCTCATGAAACTACAAAGCTTCTGCAAGGCAAAAGACA  200

seq1  CCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACC  249
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACC  250

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAA  300

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  349
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAG  349

seq1  AGCTAAACAAAGAATT  365
      |  | |||||||||||
seq2  AAGTGAACAAAGAATT  365