BAC Information

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BAC

Clone NameB6Ng01-023D03
Chromosome14 (Build37)
Map Location 84,477,062 - 84,478,225
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023D03.bB6Ng01-023D03.g
ACCDH855183DH855184
length1,0961,143
definitionDH855183|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D03, 5' end.DH855184|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccatgacttttatcatgaaggcagtttggattttg
tcaaatgctttatcagcatctaatgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtgaattatgttgatggatttccatatattaaacc
atccctgcattcctgggatgaagcctacttggtcatgatggatgatcgtt
ttgatgtgttcttggattcagtttgcgaggattttattgagtatttttgc
attgatattcctgagggaaattggtctgaagttctcttttgttgttggat
ctttgtttggtttaggtatcagagtaattgtggcttcatagaatgaattg
ggtagagtagcttctgtttctattttgtggaatagtttgagtagagttgg
aattaggtcttctttgacggtctgatagaactctgcactgaacccatcag
gtcctgggctgtttttggttgggaaactattaatgactgcttccaattct
ttaggggagatgggactgttaagatcattaatctgatcctgatttaactt
tggtacctggtatctgtctaggaacttgtccatttcatccaggttttcca
gtgttgttcagtaaagccttttgtaggatctgatgatgttttggatttcc
tcggggtcttttattttgtctccttttttcatttctgattttgttaatta
ggatgctgtccctgtgccctctagttcatctggctaagggtttatctatt
ttgtttattttcttaaagaaaagctcctggtttcgttgattctttaaata
ggtcattttgtttgtacttgtttgatttagccctaagtttgcttatttcc
tgatgtctactcctcttgggtgaatttacttgctttcattctagagcttc
tagtgtgctgtcagactgctagtgtgtgctctctctagtttcttttggaa
gcactcaggctatgagttttctcttaagactgctttcaagtgtcaaaaag
ttggggatgctgggccttctgttcactaaacctaaaagtcttcttttctt
attatttctaacccaagaatcattgcggaatattgccattctacga
gaattctatgccatttatttccattaacattaagaattaatttgggacat
cgtggcttgtgattccgatgctatttttctcctcttgctctccccctttg
aaatattaattttacaatttctaaaattactataattccatatccttgtg
cttcatatattttgttttcaagcaaatctcattgattaaagttgtgagtt
tttactggacttctaatgcctttaatttcttaatgaagatctcagattct
ataaaactttcatatattggttacacaaatgttaaagtaatgtgttaaaa
cctatgttaaaataatactagtcttcttggctgatccttattttaaaaga
atattttctgtattactcaataaactatattaaaaaaaaagatttaccag
acttcatcttctacatgtatatcaatgatgtacatatttaccactataaa
taactttattgtccagaactatgtggaagaatgtgctttattatgctata
gaaattagcacgtaggccaccttggtcttatttacattaacatttttaag
tcttttttctccttcacatgaaatctgactgccttctttatattatcttt
tgtttttctttcattaccttttcatctttccatataatagaaaatgatac
cattttcctgaatcaaggttattttcttatgtgatcttatgatgattaat
aatccttcagacaatatattattgttctattgtttgtttggataataata
cataatacatatgaacagatgtgaaacacacaagtatgtacactccgagt
cagacacacacacacacaacactcgcacacacatttgtatatgtatatat
acatatatttaatttttatcctttcaatttttgataggtacttaaaattt
tggcaacttttttattatctatagtttcttaatgaactttatatatattg
attcccattggatattgattcagttgaattttaccctttaagagtataac
agagtgtatagtgcatcaaatggggtttgcttttatttatactttggatg
tgaactagaatatacaatgcataaccatttagttcatcctagatcaggaa
tttatatttccagcattatatagagattctttattatcccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84477062_84478225
seq2: B6Ng01-023D03.g_68_1210 (reverse)

seq1  GATGTGGATAATAAAAGGAATCTTTATATAATTTTGCTGGAAATATAAAA  50
      |||| ||||||||||  |||||| |||||||   |||||||||||| |||
seq2  GATG-GGATAATAAA--GAATCTCTATATAA---TGCTGGAAATAT-AAA  43

seq1  TTCCTGTATCTAGAATGGAACTACATGTGTTATTTGCATTGTGTATTCTA  100
      |||||| |||||| || |||||| ||| ||||  |||||||| |||||||
seq2  TTCCTG-ATCTAGGAT-GAACTAAATG-GTTA--TGCATTGTATATTCTA  88

seq1  GTTCACATCCAAAAGTATAAATAAAAAGCAAACCACCATTTGATGCACTT  150
      |||||||||| ||||||||||| ||||||||||| ||||||||||||| |
seq2  GTTCACATCC-AAAGTATAAAT-AAAAGCAAACC-CCATTTGATGCAC-T  134

seq1  ATACCACTCCTGTTTATACTTCTAAAGGGTAAAATTCAAACTGAATCAAT  200
      ||| |||| ||| |||||||  ||||||||||||||| ||||||||||||
seq2  ATA-CACT-CTG-TTATACTCTTAAAGGGTAAAATTC-AACTGAATCAAT  180

seq1  ATCCAATGGGAATCAATATATATAAAGTTCATTAAGGAACTATAGATAAT  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCCAATGGGAATCAATATATATAAAGTTCATTAAGAAACTATAGATAAT  230

seq1  AAAAAAGTTGCCAAAAATTTTAAGTACCTATCAAAAATTGAAAGGATAAA  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTTGCC-AAAATTTTAAGTACCTATCAAAAATTGAAAGGATAAA  279

seq1  AATTAAATATATGTATATATACATATACAAATGTGTGTGCGAGTGTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATATATGTATATATACATATACAAATGTGTGTGCGAGTGTTGTG  329

seq1  TGTGTGTGTGTCTGACTCGGAGTGTACATACTTGTGTGTTTCACATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTCTGACTCGGAGTGTACATACTTGTGTGTTTCACATCTGT  379

seq1  TCATATGTATTATGTATTATTATCCAAACAAACAATAGAACAATAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTATTATGTATTATTATCCAAACAAACAATAGAACAATAATATA  429

seq1  TTGTCTGAAGGATTATTAATCATCATAAGATCACATAAGAAAATAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAAGGATTATTAATCATCATAAGATCACATAAGAAAATAACCTT  479

seq1  GATTCAGGAAAATGGTATCATTTTCTATTATATGGAAAGATGAAAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGAAAATGGTATCATTTTCTATTATATGGAAAGATGAAAAGGTA  529

seq1  ATGAAAGAAAAACAAAAGATAATATAAAGAAGGCAGTCAGATTTCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAAACAAAAGATAATATAAAGAAGGCAGTCAGATTTCATGTG  579

seq1  AAGGAGAAAAAAGACTTAAAAATGTTAATGTAAATAAGACCAAGGTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAAAAGACTTAAAAATGTTAATGTAAATAAGACCAAGGTGGCC  629

seq1  TACGTGCTAATTTCTATAGCATAATAAAGCACATTCTTCCACATAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCTAATTTCTATAGCATAATAAAGCACATTCTTCCACATAGTTCT  679

seq1  GGACAATAAAGTTATTTATAGTGGTAAATATGTACATCATTGATATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAAAGTTATTTATAGTGGTAAATATGTACATCATTGATATACAT  729

seq1  GTAGAAGATGAAGTCTGGTAAATCTTTTTTTTTAATATAGTTTATTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGATGAAGTCTGGTAAATCTTTTTTTTTAATATAGTTTATTGAGT  779

seq1  AATACAGAAAATATTCTTTTAAAATAAGGATCAGCCAAGAAGACTAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAAAATATTCTTTTAAAATAAGGATCAGCCAAGAAGACTAGTAT  829

seq1  TATTTTAACATAGGTTTTAACACATTACTTTAACATTTGTGTAACCAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAACATAGGTTTTAACACATTACTTTAACATTTGTGTAACCAATA  879

seq1  TATGAAAGTTTTATAGAATCTGAGATCTTCATTAAGAAATTAAAGGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGTTTTATAGAATCTGAGATCTTCATTAAGAAATTAAAGGCATT  929

seq1  AGAAGTCCAGTAAAAACTCACAACTTTAATCAATGAGATTTGCTTGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCAGTAAAAACTCACAACTTTAATCAATGAGATTTGCTTGAAAA  979

seq1  CAAAATATATGAAGCACAAGGATATGGAATTATAGTAATTTTAGAAATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATGAAGCACAAGGATATGGAATTATAGTAATTTTAGAAATTG  1029

seq1  TAAAATTAATATTTCAAAGGGGGAGAGCAAGAGGAGAAAAATAGCATCGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAATATTTCAAAGGGGGAGAGCAAGAGGAGAAAAATAGCATCGG  1079

seq1  AATCACAAGCCACGATGTCCCAAATTAATTCTTAATGTTAATGGAAATAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAGCCACGATGTCCCAAATTAATTCTTAATGTTAATGGAAATAA  1129

seq1  ATGGCATAGAATTC  1164
      ||||||||||||||
seq2  ATGGCATAGAATTC  1143