BAC Information

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BAC

Clone NameB6Ng01-024E14
Chromosome14 (Build37)
Map Location 34,115,883 - 34,243,630
singlet/doubletdoublet
Overlap geneArhgap22, Mapk8, LOC100040079
Upstream geneOgdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657
Downstream geneLOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024E14.bB6Ng01-024E14.g
ACCDH855969DH855970
length1,102975
definitionDH855969|Mus musculus domesticus DNA, BAC clone: B6Ng01-024E14, 5' end.DH855970|Mus musculus domesticus DNA, BAC clone: B6Ng01-024E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,115,883 - 34,116,987)(34,242,992 - 34,243,630)
sequence
gaattcaacaccggtgctgatggaggccctggggtggctctccttcctac
cctctttccagaggctctgaagtcttgagacttcctaccaacctagtccc
agggactcaggagattttggctacagctagaaatattccactccctttat
agcctgttaaggtgtggcgcccagggatgttaggtgaaccacccgaggtc
aaacagctggcagaaggggacctgtacctccgaggtcagcctgccctggg
ctgagctttatgtgactaccgtttccaacagaggctccggacaggggcct
tgtggctagaaaaggaatagtaatgataaagttgaggtccagatggcaat
aagcactggaatttccactgtgacagagctgaggcaggaaaattaccatt
ttgaggccagcatggacaaagaaggaaggaacaaaagaagggaaggttga
gtgaccccacctgaaacaagagccaccaaggagccttctcactcaaactc
agtaacccgtgctatgggtctgatcttgagctggcctccagaggccctgg
tgaaagcagggtacaatctctgcccttaaagaatcaggggacaatgctta
ccatcctgatcttgagacaaggtaaataccttacttactaggttgaggct
aattacatggggacagaaacaggaagtatggctgtgaaggcccctgttgg
tatctcccagcactgaagcccggggcaggacaggaaaacggacagaggca
ttgccagtgctatggcctgagcctgggatagcccctcgttctgccctggg
gtaccttcatcgcccaaggaggaaaactttgacagccctttggagatgtg
attgttcttagatgatcggctacttaagtttaatttcatagagtctattg
cagccttcaatcctgtggaaagtgacagaaagttaatggtgttgagtgcc
acctagtggacaacttgtcaatgcaaaccccactcatgtgctgcatctcc
aagctagggtttcaagaagccagagaccgcatgcacattcccgagtagtc
ataaaaggacattgtcactgggggatgaagtcaggctcctatccctggct
at
gaattcacattgtggaccagactggccttcaactcagacacccacctgcc
tctgcctcttgaatattggaattaaaggcatgccccatcatgtctgacaa
cagcaagggttttgaaaactgctgcattatatgaaaccagctgtgatggc
tattcctggttgtcagcttgactacatctggaatgaactacaatccagaa
atggaggacatacctgtgatccagatcttgaggcatagtggccatgaaag
tttaggtctaggtaaggtagtacacatctttaatcagtcttgcttttctg
gtatgttggggtaaccagggctcgctgtggtgggagaactaggttgcgat
gatgccaagtagccttggtttctgttgcttatgttcttgcccttgtctct
tgccatctggttatctgtggtgttagctggtcttgctgtttctgactatg
gcttgtccctcctacaagcctgtgtgtctgaactcctggaagaccagttc
tctcctggaggaatttggatatgaagagctatggcatagggtcagctctg
gggtgcagatggaaaccagaaggatcctgaccctggctgtgccttagttt
ttgtgtcctgatggctctgggcaggtccctctttgggccaggaatttgag
cagaagtggtggtcttacacaggcgtgtctgcactcctgagagaccagct
ctctcccagcagcgatatttgggtatagagcactgagctaaataaatcct
taatcatgtagatcccaggcatttgccatttgtctcatagttggaagttt
tgtcctttgcacatgtagattagttttcagccaaaatcttaggcaggtta
ctactacagtactttggtgctctttctctagtctttacaccaacctacag
ataccagctaccttttatcttcctctgtcttgtagctcagagagctacca
tgtttgtttatgtggccttttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_34115883_34116987
seq2: B6Ng01-024E14.b_33_1134

seq1  GAATTCAACACCGGTGCTGATGGAGGCCCTGGGGTGGCTCTCCTTCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACCGGTGCTGATGGAGGCCCTGGGGTGGCTCTCCTTCCTAC  50

seq1  CCTCTTTCCAGAGGCTCTGAAGTCTTGAGACTTCCTACCAACCTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCAGAGGCTCTGAAGTCTTGAGACTTCCTACCAACCTAGTCCC  100

seq1  AGGGACTCAGGAGATTTTGGCTACAGCTAGAAATATTCCACTCCCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCAGGAGATTTTGGCTACAGCTAGAAATATTCCACTCCCTTTAT  150

seq1  AGCCTGTTAAGGTGTGGCGCCCAGGGATGTTAGGTGAACCACCCGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTAAGGTGTGGCGCCCAGGGATGTTAGGTGAACCACCCGAGGTC  200

seq1  AAACAGCTGGCAGAAGGGGACCTGTACCTCCGAGGTCAGCCTGCCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGCAGAAGGGGACCTGTACCTCCGAGGTCAGCCTGCCCTGGG  250

seq1  CTGAGCTTTATGTGACTACCGTTTCCAACAGAGGCTCCGGACAGGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTATGTGACTACCGTTTCCAACAGAGGCTCCGGACAGGGGCCT  300

seq1  TGTGGCTAGAAAAGGAATAGTAATGATAAAGTTGAGGTCCAGATGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAGAAAAGGAATAGTAATGATAAAGTTGAGGTCCAGATGGCAAT  350

seq1  AAGCACTGGAATTTCCACTGTGACAGAGCTGAGGCAGGAAAATTACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGGAATTTCCACTGTGACAGAGCTGAGGCAGGAAAATTACCATT  400

seq1  TTGAGGCCAGCATGGACAAAGAAGGAAGGAACAAAAGAAGGGAAGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCATGGACAAAGAAGGAAGGAACAAAAGAAGGGAAGGTTGA  450

seq1  GTGACCCCACCTGAAACAAGAGCCACCAAGGAGCCTTCTCACTCAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCACCTGAAACAAGAGCCACCAAGGAGCCTTCTCACTCAAACTC  500

seq1  AGTAACCCGTGCTATGGGTCTGATCTTGAGCTGGCCTCCAGAGGCCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCGTGCTATGGGTCTGATCTTGAGCTGGCCTCCAGAGGCCCTGG  550

seq1  TGAAAGCAGGGTACAATCTCTGCCCTTAAAGAATCAGGGGACAATGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGGGTACAATCTCTGCCCTTAAAGAATCAGGGGACAATGCTTA  600

seq1  CCATCCTGATCTTGAGACAAGGTAAATACCTTACTTACTAGGTTGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGATCTTGAGACAAGGTAAATACCTTACTTACTAGGTTGAGGCT  650

seq1  AATTACATGGGGACAGAAACAGGAAGTATGGCTGTGAAGGCCCCTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGGGGACAGAAACAGGAAGTATGGCTGTGAAGGCCCCTGTTGG  700

seq1  TATCTCCCAGCACTGAAGCCCGGGGCAGGACAGGAAAACGGACAGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCAGCACTGAAGCCCGGGGCAGGACAGGAAAACGGACAGAGGCA  750

seq1  TTGCCAGTGCTATGGCCTGAGCCTGGGATAGCCCCTCGTTCTGCCCT-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGCCAGTGCTATGGCCTGAGCCTGGGATAGCCCCTCGTTCTGCCCTGGG  800

seq1  GTACCTTCATCGCCCAAGGAGGAAAAC-TTGACAGCCC-TTGGAGATGTG  847
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GTACCTTCATCGCCCAAGGAGGAAAACTTTGACAGCCCTTTGGAGATGTG  850

seq1  ATTGTTCTTAAGATGATCGGCTACTTAAGTTTAA-TTCATAGAGTCTATT  896
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  ATTGTTCTT-AGATGATCGGCTACTTAAGTTTAATTTCATAGAGTCTATT  899

seq1  GCAGCCTTCAATCCTGTGGAAAGTGACAGAAAAGAAATGGTG-TGAGTGC  945
      ||||||||||||||||||||||||||||||||   ||||||| |||||||
seq2  GCAGCCTTCAATCCTGTGGAAAGTGACAGAAAGTTAATGGTGTTGAGTGC  949

seq1  CACCTAGTGGACAAACTTGTCAATGCAAACACCACTCATGTGCTGCAATC  995
      |||||||||||| ||||||||||||||||| ||||||||||||||| |||
seq2  CACCTAGTGGAC-AACTTGTCAATGCAAACCCCACTCATGTGCTGC-ATC  997

seq1  TCCAAGCTA-GGTTTCAAAGAGCCAGAGAACCGCATGCACAGTCACCGAG  1044
      ||||||||| ||||||||  |||||||| |||||||||||| || |||||
seq2  TCCAAGCTAGGGTTTCAAGAAGCCAGAG-ACCGCATGCACATTC-CCGAG  1045

seq1  CAAGTCATAAGAGGACAGTGTCACTGGGGGAATGAGTGCAGGGCTCCTAT  1094
        |||||||| |||||| |||||||||||| ||||   || |||||||||
seq2  -TAGTCATAAAAGGACATTGTCACTGGGGG-ATGAAGTCA-GGCTCCTAT  1092

seq1  CGCCTGGCTAT  1105
      | |||||||||
seq2  C-CCTGGCTAT  1102

seq1: chr14_34242992_34243630
seq2: B6Ng01-024E14.g_69_708 (reverse)

seq1  TGGCCC-AAGAGGGACCTGCCCAGAGCCATCAGGACACAAAAACTAAGGC  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAAAGAGGGACCTGCCCAGAGCCATCAGGACACAAAAACTAAGGC  50

seq1  ACAGCCAGGGTCAGGATCCTTCTGGTTTCCATCTGCACCCCAGAGCTGAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGTCAGGATCCTTCTGGTTTCCATCTGCACCCCAGAGCTGAC  100

seq1  CCTATGCCATAGCTCTTCATATCCAAATTCCTCCAGGAGAGAACTGGTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCATAGCTCTTCATATCCAAATTCCTCCAGGAGAGAACTGGTCT  150

seq1  TCCAGGAGTTCAGACACACAGGCTTGTAGGAGGGACAAGCCATAGTCAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGTTCAGACACACAGGCTTGTAGGAGGGACAAGCCATAGTCAGA  200

seq1  AACAGCAAGACCAGCTAACACCACAGATAACCAGATGGCAAGAGACAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAGACCAGCTAACACCACAGATAACCAGATGGCAAGAGACAAGG  250

seq1  GCAAGAACATAAGCAACAGAAACCAAGGCTACTTGGCATCATCGCAACCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACATAAGCAACAGAAACCAAGGCTACTTGGCATCATCGCAACCT  300

seq1  AGTTCTCCCACCACAGCGAGCCCTGGTTACCCCAACATACCAGAAAAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCCACCACAGCGAGCCCTGGTTACCCCAACATACCAGAAAAGCA  350

seq1  AGACTGATTAAAGATGTGTACTACCTTACCTAGACCTAAACTTTCATGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATTAAAGATGTGTACTACCTTACCTAGACCTAAACTTTCATGGC  400

seq1  CACTATGCCTCAAGATCTGGATCACAGGTATGTCCTCCATTTCTGGATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCCTCAAGATCTGGATCACAGGTATGTCCTCCATTTCTGGATTG  450

seq1  TAGTTCATTCCAGATGTAGTCAAGCTGACAACCAGGAATAGCCATCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATTCCAGATGTAGTCAAGCTGACAACCAGGAATAGCCATCACAG  500

seq1  CTGGTTTCATATAATGCAGCAGTTTTCAAAACCCTTGCTGTTGTCAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCATATAATGCAGCAGTTTTCAAAACCCTTGCTGTTGTCAGACA  550

seq1  TGATGGGGCATGCCTTTAATTCCAATATTCAAGAGGCAGAGGCAGGTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGGCATGCCTTTAATTCCAATATTCAAGAGGCAGAGGCAGGTGGG  600

seq1  TGTCTGAGTTGAAGGCCAGTCTGGTCCACAATGTGAATTC  639
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTTGAAGGCCAGTCTGGTCCACAATGTGAATTC  640