BAC Information

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BAC

Clone NameB6Ng01-024H17
Chromosome14 (Build37)
Map Location 88,497,239 - 88,498,279
singlet/doubletsinglet
Overlap geneLOC100043317
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024H17.bB6Ng01-024H17.g
ACCDH856105DH856106
length1,0521,021
definitionDH856105|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H17, 5' end.DH856106|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgttcaattctgagccccattttttaatggggttatttaatt
ttctggagtccaccctcttcagttatttatatatattggatattagtccc
ctatctgatttaggataggtaaagattctttcccaatctgttggtggcct
ttttgtcttattgacagtatcttttaccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcaatcttacagcacatgccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttatcttctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatagattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
ggccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttaatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggtactt
tttatccttgagaagagtttttgctatcctaggttttctgttattccaga
tgaatttgcagattgctcttttctaatttcgttgaagaattgagttggaa
ttttgatggggattgcattgaatctgtagattgcttttggcaagatagcc
attttttcaatgttgatcctgccaatccatgagcatgggagatctttcca
ttttctgagatcttctttaatttctttcttcagagacttgaattttttta
tcatacagacctttcacttcccttgttagagtcatgcccaagatatttat
attaattgtgactattgagaaggtgtgtttccctaattccttcttcagct
gttatccttgggtaaggtaggcattgactgttgaatatttatacctgcta
ct
gaattctaggcaactgtgagccttctgaacaaaacatgatcttaactgag
ttcattatctatctactgccctatttttttctgcagctatatcctgtttt
acttaaattttcattatttttaaggactgagctcataactttatttggta
taaataaaactgcagtggatattataatgcaatataagtcccactaagat
gtttcctgagccaattgccataatatatgcctgtaatctcagctacagag
aggaagagaacagagaattaggagttgcggcttagggaactaagcaaaaa
taataaataacgaaataataaaagttcaagaaactttgcttaccttgact
cttggcttgtcagtgatgttaactgggacccagtgtctgcttctgtcaaa
cttacccatgaatctgtagataccatatttgactgcatctccatccatgt
tgacaaggctggtatccagatcagtaatgcgtgctgggagccttcaggct
gccttcaggttggatgctaagcgacaagacaagatcttccagagagatga
taattccttcaacaccttctttggtaagatagttgctggcaagcatggcc
tcagggcagtgttgttatatatggaatctatagttatggacaaaatttac
actggtacctactgccagctcttttaactgagtagcttatccactgccca
taactatgcccatggccaatataccactggcaaagagatcattgaccttg
tcttggaccatacacataagctagtaaacagatcttcatgacctcttagt
tttccagagcttttgcagggggattgcctctggttcaccttccagctggt
gcaatagctttctgttaatatgggaagaagtccagctggagctttgatct
ccagctccctgctctagtttccactgtgtgtgagcctatcatcatctggc
acccccaccaccctggagcactctgatgtgcctcatggtagtcatgagac
attatgacatcatcaatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88497239_88498279
seq2: B6Ng01-024H17.g_65_1085 (reverse)

seq1  TTCTA-TGATGGATGTCATAATGGTCTCATTGACTACCATGAAGGCACAA  49
      ||||| |||| ||||||||||| |||||| ||||||||||| |||||| |
seq2  TTCTATTGAT-GATGTCATAAT-GTCTCA-TGACTACCATG-AGGCAC-A  45

seq1  TCAGAGTGCTCCAGGGTGGTGTGGGTGCCAAGGATGGAATGATAGGGCTC  99
      ||||||||||||||||||||| ||||||||  ||||  |||||| |||||
seq2  TCAGAGTGCTCCAGGGTGGTGGGGGTGCCA--GATG--ATGATA-GGCTC  90

seq1  AACAACAACAGTGGAAAACTAGGAGCAGGGAGCTGGGAGATTCAAAAGCT  149
       |||   ||||||| |||||| |||||||||||| ||||||   ||||||
seq2  -ACA--CACAGTGG-AAACTA-GAGCAGGGAGCT-GGAGAT--CAAAGCT  132

seq1  CCAGCTTGGACTTCTTCCCATAATTAACAGAAAGCTATTGCACCAGCTGG  199
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAGC-TGGACTTCTTCCCAT-ATTAACAGAAAGCTATTGCACCAGCTGG  180

seq1  AAGGTGAACCCAGAGGCAATCCCCCTGCAAAAGCTCTGGAAAACTAAGAG  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAA-CCAGAGGCAATCCCCCTGCAAAAGCTCTGGAAAACTAAGAG  229

seq1  GTCATGAAGATCTGTTTACTAGCTTATGTGTATGGTCCAAGACAAGGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAAGATCTGTTTACTAGCTTATGTGTATGGTCCAAGACAAGGTCA  279

seq1  ATGATCTCTTTGCCAGTGGTATATTGGCCATGGGCATAGTTATGGGCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCTTTGCCAGTGGTATATTGGCCATGGGCATAGTTATGGGCAGT  329

seq1  GGATAAGCTACTCAGTTAAAAGAGCTGGCAGTAGGTACCAGTGTAAATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGCTACTCAGTTAAAAGAGCTGGCAGTAGGTACCAGTGTAAATTT  379

seq1  TGTCCATAACTATAGATTCCATATATAACAACACTGCCCTGAGGCCATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATAACTATAGATTCCATATATAACAACACTGCCCTGAGGCCATGC  429

seq1  TTGCCAGCAACTATCTTACCAAAGAAGGTGTTGAAGGAATTATCATCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCAACTATCTTACCAAAGAAGGTGTTGAAGGAATTATCATCTCT  479

seq1  CTGGAAGATCTTGTCTTGTCGCTTAGCATCCAACCTGAAGGCAGCCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGATCTTGTCTTGTCGCTTAGCATCCAACCTGAAGGCAGCCTGAA  529

seq1  GGCTCCCAGCACGCATTACTGATCTGGATACCAGCCTTGTCAACATGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAGCACGCATTACTGATCTGGATACCAGCCTTGTCAACATGGAT  579

seq1  GGAGATGCAGTCAAATATGGTATCTACAGATTCATGGGTAAGTTTGACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCAGTCAAATATGGTATCTACAGATTCATGGGTAAGTTTGACAG  629

seq1  AAGCAGACACTGGGTCCCAGTTAACATCACTGACAAGCCAAGAGTCAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACTGGGTCCCAGTTAACATCACTGACAAGCCAAGAGTCAAGG  679

seq1  TAAGCAAAGTTTCTTGAACTTTTATTATTTCGTTATTTATTATTTTTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAGTTTCTTGAACTTTTATTATTTCGTTATTTATTATTTTTGCT  729

seq1  TAGTTCCCTAAGCCGCAACTCCTAATTCTCTGTTCTCTTCCTCTCTGTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCCTAAGCCGCAACTCCTAATTCTCTGTTCTCTTCCTCTCTGTAG  779

seq1  CTGAGATTACAGGCATATATTATGGCAATTGGCTCAGGAAACATCTTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTACAGGCATATATTATGGCAATTGGCTCAGGAAACATCTTAGT  829

seq1  GGGACTTATATTGCATTATAATATCCACTGCAGTTTTATTTATACCAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTATATTGCATTATAATATCCACTGCAGTTTTATTTATACCAAAT  879

seq1  AAAGTTATGAGCTCAGTCCTTAAAAATAATGAAAATTTAAGTAAAACAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGAGCTCAGTCCTTAAAAATAATGAAAATTTAAGTAAAACAGG  929

seq1  ATATAGCTGCAGAAAAAAATAGGGCAGTAGATAGATAATGAACTCAGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGCAGAAAAAAATAGGGCAGTAGATAGATAATGAACTCAGTTA  979

seq1  AGATCATGTTTTGTTCAGAAGGCTCACAGTTGCCTAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGTTTTGTTCAGAAGGCTCACAGTTGCCTAGAATTC  1021