BAC Information

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BAC

Clone NameB6Ng01-025P05
Chromosome14 (Build37)
Map Location 112,999,399 - 113,092,947
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025P05.bB6Ng01-025P05.g
ACCDH857138DH857139
length1,0321,045
definitionDH857138|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P05, 5' end.DH857139|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,091,911 - 113,092,947)(112,999,399 - 113,000,453)
sequence
gaattcaaacctggtccactggtagaatagccaagccccttaaaattctg
acatcactcaaaaaccaatgaaaaatatcatccatatcttctgacactat
acttttttttataattatagctattgtggaatataaaatttctgacatac
aagcagtttttatttctcaactacatagtctttaatcattgttacttttg
tttccacaaagaagaacaataaatgttgatggttgataagtcactgtatc
aggattatcataaagatagtgtgctagtgccaaatgtaaatcaatatgat
ggggaaaaagcacaaatctagaaaggaggctgtgtcactgtttctaaata
ttttttaaaactgctattcattaaaaaaaggttaatagtcttattcacat
taatttccagtttttgttatattaccaggtttttttttttaatttaagct
ggtaatataacaaaaactgagatttcatgtggataataatctgatatatt
ttatgtactaaattaacagtagttccttgtagaatataaaagttgtagtc
actgagtcaattcttaaacaatggttcagaatgcatagcagatcttattt
ggaaaggaggctgcagaggtatgttgatgatttatctttatatattctac
ttagtgtaataaaacctatcctttaaaatgcattgctttataagaatgca
cataactggtaagtggtgtagctcagtagataatgtgcttgtctagaatg
catgaggtcctggacttgattccccaatacttcataaatgaggagtaatg
ccacaaacttgcaaactcaaatcaaaagcatgcaataatcaacttgacat
gaccattctcagttgaatttttcaaagcatgaatgatttacactatgcaa
ggtaactactatttatcaatatgctttcttctctgtagctaggaaaacat
ttttattaactataaaagtacattttaaatctattacattaacatgaaac
tgtcatatttaatttatcaaaatttttttcta
gaattctctgttgaagaataagtttgagaatccattatcaaaaatacagt
atttaggatttcaaattcattttgataattaatatttatatataaattat
gtgacatttgagtgagcccctaatttaaacataagttcatgtttacttgc
acacatagccttatgagaaatctttacagtaatttaggtgtagcttcatt
agactctgaaaaaaaatcacaaatgaatagtaacaggatatttccaaatt
tgttacaaaaactaaaagggttatgattttagagcataccagaattttaa
tttcagattaaaactatgtagcctatattattttataaagaaaattaatt
cttaaatattacatattagtacacacacacacacatatatatatatatat
atatatatatgaatatatatgtttaagaaaatttaaatcacctttactgt
tacattcacaatcactaaatatgacttgaaatatgattttattgcatttt
gaaagtataatttttatttttaatgtagtacccaatgtacctggaagctc
agtaaagaattctttaaaaacaataaattccaaagtctgaatatttataa
tacagagttataattactctggccaaaattaatcttattaaaaataatct
tgtaatcattattttgctgatggataattagaaataaatgtaaagcaatt
tacaaaacgtattttgattactacagattttacatagacaaagcatgctt
ttggtttgactataaatatattttttccgtgtatgggacagacctagaca
cttttcatgtgggagtcctaaaggtgagcaggtaccatctctcactacat
tgcctgcttttgaatccctttctcctgtctgccctgtgctctctatcctc
atagaagaagatgtaacaagtcttattgaaactggatatgccagcagttg
atatccatgaaacctcccctttctgcagagagagatgaggagtgaataca
gagagagcagtgagaaggagggactgggaggagggaaggggaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113091911_113092947
seq2: B6Ng01-025P05.b_44_1075 (reverse)

seq1  TAGAAAAAAATTTTGAATAAAGTAAATATTGAACAGTTTTCATGTTAATG  50
      ||||||||||||||| ||||| |||||||   |||| |||||||||||||
seq2  TAGAAAAAAATTTTG-ATAAATTAAATAT--GACAG-TTTCATGTTAATG  46

seq1  TAATAGATTTAAAATGTACTTTTATAGTTAAATAAAAATGTTTTCCTAGC  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATAGATTTAAAATGTACTTTTATAGTT-AATAAAAATGTTTTCCTAGC  95

seq1  TACAGAGAAGAAAGCATATTGATAAATAGTAGTTACCTTGCATAGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAGAAAGCATATTGATAAATAGTAGTTACCTTGCATAGTGTAA  145

seq1  ATCATTCATGCTTTGAAAAATTCAACTGAGAATGGTCATGTCAAGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCATGCTTTGAAAAATTCAACTGAGAATGGTCATGTCAAGTTGAT  195

seq1  TATTGCATGCTTTTGATTTGAGTTTGCAAGTTTGTGGCATTACTCCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATGCTTTTGATTTGAGTTTGCAAGTTTGTGGCATTACTCCTCAT  245

seq1  TTATGAAGTATTGGGGAATCAAGTCCAGGACCTCATGCATTCTAGACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTATTGGGGAATCAAGTCCAGGACCTCATGCATTCTAGACAAG  295

seq1  CACATTATCTACTGAGCTACACCACTTACCAGTTATGTGCATTCTTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATCTACTGAGCTACACCACTTACCAGTTATGTGCATTCTTATAA  345

seq1  AGCAATGCATTTTAAAGGATAGGTTTTATTACACTAAGTAGAATATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCATTTTAAAGGATAGGTTTTATTACACTAAGTAGAATATATAA  395

seq1  AGATAAATCATCAACATACCTCTGCAGCCTCCTTTCCAAATAAGATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATCATCAACATACCTCTGCAGCCTCCTTTCCAAATAAGATCTGC  445

seq1  TATGCATTCTGAACCATTGTTTAAGAATTGACTCAGTGACTACAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTCTGAACCATTGTTTAAGAATTGACTCAGTGACTACAACTTTT  495

seq1  ATATTCTACAAGGAACTACTGTTAATTTAGTACATAAAATATATCAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTACAAGGAACTACTGTTAATTTAGTACATAAAATATATCAGATT  545

seq1  ATTATCCACATGAAATCTCAGTTTTTGTTATATTACCAGCTTAAATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCACATGAAATCTCAGTTTTTGTTATATTACCAGCTTAAATTAAA  595

seq1  AAAAAAAACCTGGTAATATAACAAAAACTGGAAATTAATGTGAATAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCTGGTAATATAACAAAAACTGGAAATTAATGTGAATAAGAC  645

seq1  TATTAACCTTTTTTTAATGAATAGCAGTTTTAAAAAATATTTAGAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCTTTTTTTAATGAATAGCAGTTTTAAAAAATATTTAGAAACAG  695

seq1  TGACACAGCCTCCTTTCTAGATTTGTGCTTTTTCCCCATCATATTGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGCCTCCTTTCTAGATTTGTGCTTTTTCCCCATCATATTGATTT  745

seq1  ACATTTGGCACTAGCACACTATCTTTATGATAATCCTGATACAGTGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGCACTAGCACACTATCTTTATGATAATCCTGATACAGTGACTT  795

seq1  ATCAACCATCAACATTTATTGTTCTTCTTTGTGGAAACAAAAGTAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCATCAACATTTATTGTTCTTCTTTGTGGAAACAAAAGTAACAAT  845

seq1  GATTAAAGACTATGTAGTTGAGAAATAAAAACTGCTTGTATGTCAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGACTATGTAGTTGAGAAATAAAAACTGCTTGTATGTCAGAAAT  895

seq1  TTTATATTCCACAATAGCTATAATTATAAAAAAAAGTATAGTGTCAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCCACAATAGCTATAATTATAAAAAAAAGTATAGTGTCAGAAG  945

seq1  ATATGGATGATATTTTTCATTGGTTTTTGAGTGATGTCAGAATTTTAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGATATTTTTCATTGGTTTTTGAGTGATGTCAGAATTTTAAGG  995

seq1  GGCTTGGCTATTCTACCAGTGGACCAGGTTTGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCTATTCTACCAGTGGACCAGGTTTGAATTC  1032

seq1: chr14_112999399_113000453
seq2: B6Ng01-025P05.g_68_1112

seq1  GAATTCTCTGTTGAAGAATAAGTTTGAGAATCCATTATCAAAAATACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTGAAGAATAAGTTTGAGAATCCATTATCAAAAATACAGT  50

seq1  ATTTAGGATTTCAAATTCATTTTGATAATTAATATTTATATATAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGATTTCAAATTCATTTTGATAATTAATATTTATATATAAATTAT  100

seq1  GTGACATTTGAGTGAGCCCCTAATTTAAACATAAGTTCATGTTTACTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTGAGTGAGCCCCTAATTTAAACATAAGTTCATGTTTACTTGC  150

seq1  ACACATAGCCTTATGAGAAATCTTTACAGTAATTTAGGTGTAGCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGCCTTATGAGAAATCTTTACAGTAATTTAGGTGTAGCTTCATT  200

seq1  AGACTCTGAAAAAAAATCACAAATGAATAGTAACAGGATATTTCCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGAAAAAAAATCACAAATGAATAGTAACAGGATATTTCCAAATT  250

seq1  TGTTACAAAAACTAAAAGGGTTATGATTTTAGAGCATACCAGAATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAAAACTAAAAGGGTTATGATTTTAGAGCATACCAGAATTTTAA  300

seq1  TTTCAGATTAAAACTATGTAGCCTATATTATTTTATAAAGAAAATTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTAAAACTATGTAGCCTATATTATTTTATAAAGAAAATTAATT  350

seq1  CTTAAATATTACATATTAGTACACACACACACACATATATATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATTACATATTAGTACACACACACACACATATATATATATATAT  400

seq1  ATATATATATGAATATATATGTTTAAGAAAATTTAAATCACCTTTACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGAATATATATGTTTAAGAAAATTTAAATCACCTTTACTGT  450

seq1  TACATTCACAATCACTAAATATGACTTGAAATATGATTTTATTGCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCACAATCACTAAATATGACTTGAAATATGATTTTATTGCATTTT  500

seq1  GAAAGTATAATTTTTATTTTTAATGTAGTACCCAATGTACCTGGAAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATAATTTTTATTTTTAATGTAGTACCCAATGTACCTGGAAGCTC  550

seq1  AGTAAAGAATTCTTTAAAAACAATAAATTCCAAAGTCTGAATATTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAATTCTTTAAAAACAATAAATTCCAAAGTCTGAATATTTATAA  600

seq1  TACAGAGTTATAATTACTCTGGCCAAAATTAATCTTATTAAAAATAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTTATAATTACTCTGGCCAAAATTAATCTTATTAAAAATAATCT  650

seq1  TGTAATCATTATTTTGCTGATGGATAATTAGAAATAAATGTAAAGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCATTATTTTGCTGATGGATAATTAGAAATAAATGTAAAGCAATT  700

seq1  TACAAAACGTATTTTGATTACTACAGATTTTACATAGACAAAGCATGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACGTATTTTGATTACTACAGATTTTACATAGACAAAGCATGCTT  750

seq1  TTGGTTTGACTATAAATATATTTTTTCCGTGTATGGGACAGACCTAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGACTATAAATATATTTTTTCCGTGTATGGGACAGACCTAGACA  800

seq1  CTTTTCATGTGGGAGTCCTAAAGGTGAGCAGGTACCATCTCTCACTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGTGGGAGTCCTAAAGGTGAGCAGGTACCATCTCTCACTACAT  850

seq1  TGCCTGCTTTTGAATCCCTTTCTCCTGTCTGCCCTGTGCTCTCTATCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTTTGAATCCCTTTCTCCTGTCTGCCCTGTGCTCTCTATCCTC  900

seq1  AATAGAAGAAGATGTAACAAGTCTTATTGAAACTGGATATGCCAAGGCAA  950
       |||||||||||||||||||||||||||||||||||||||||||  || |
seq2  -ATAGAAGAAGATGTAACAAGTCTTATTGAAACTGGATATGCCA--GC-A  946

seq1  GTTGATATCCAATGAAAACCTCCCCCTTTCTGCAGAGAGGAGGATGAGGA  1000
      |||||||||| ||| |||||| |||||||||||||||||   ||||||||
seq2  GTTGATATCC-ATG-AAACCT-CCCCTTTCTGCAGAGAG--AGATGAGGA  991

seq1  GTGAATACAGGAGAGAGGCAGTGAGAGGGAGGGACTGGAAGGAGGG-AGG  1049
      ||||||||| |||||| ||||||||| ||||||||||| ||||||| |||
seq2  GTGAATACA-GAGAGA-GCAGTGAGAAGGAGGGACTGGGAGGAGGGAAGG  1039

seq1  GGAAGC  1055
      |||| |
seq2  GGAACC  1045