BAC Information

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BAC

Clone NameB6Ng01-026J01
Chromosome14 (Build37)
Map Location 78,948,026 - 79,069,146
singlet/doubletdoublet
Overlap geneDgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J01.bB6Ng01-026J01.g
ACCDH857574DH857575
length1,0681,134
definitionDH857574|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J01, 5' end.DH857575|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,948,026 - 78,949,100)(79,067,978 - 79,069,146)
sequence
gaattcctgcagcctctcgttcctacagagttctttaaccttcaccttct
atcccaaggatttgactctcctcaagaatttctaagaaaccatttgtcag
gaactccatgagagataaattcccctaacaggctaacctattagccagtt
aactccatagagtagtttccacaaaaccagtttgatcacaatgccactta
aacgcagtgagaaaccaggccttattattagtgactcccaaggaactgtc
acagaattgggaaataggcattagctggagtccaagcatatttctgctga
tccacagtatcttctgattcactattttcatatgctttctggggccttgg
cctgagaaattgcaaccaagccaagagcagacaaggaattcaatgttggt
accctggagaaaacaggggctcccaggtatgatgtcatcagttgctaaaa
aaattaagttaggtaagtgtgagctgtctgtagtggagtaagcagaggtg
gcttggagcaaagcagaagtcaacgtagggcacaaccaaagcaaaacctt
cagatagcagaagggccgagttgatcaaatacagagttgaagccaaaagg
atgccatgtctcccaaggcaaatggctttcaggtaagccttcttcaatgc
ggctgaaaggacacatctgtccccatcgttcaaggcaaagggcttcactt
ccggaaggacttaatctctaggtctgaggtatttaagagccattgaggga
cagctgtgtcctaataaacattctatttttggagcctggctctccagagt
gcctcatgattagtctgacacaggctaagaggaagtcaggaagcttagca
agtgttgagagccgtacaagtggtgagactgtttccgtcactctcatctg
ggacactgtgccctgtactaagcaggatgggtttcagcaacagagctaag
tgaaaatcaagctggggcggggggctccacatcccaaagacagcacacaa
atgcagcaggtgcaaacagttcaccctgagcatgaaaggtgaccaacacg
cagccaaatggagcatca
gaattcagagagctggcagatgtctaaatgagtatccctgtgtcatcagg
acctagatattctcttggggaagaactagaaaccttgagaatattgaaat
acatgactaaaattccagaaatcacacacacacacacacacacacacaca
cacacacacacacacacacacacacacacaaagaggactggctcttcctg
acatccatatgaatggtagcatgtgactcccggtgctgtgtgtggtctgt
ccatcgtctccgttgcacttcattcttttctgtcctgttcttggccaccc
cagtgaccccaaacccctccgtagccctgaactagacctgggagcatggt
gagtgccaggtttactgagggccaggaaaggtgcggagtcatctgtttag
cacatgagttactagttaaaaagttgacagtgttcagtagttaattttag
gccccatcaacatgcccccatcaaaacagctttatcatggtggccacatg
ggaaagcggttacatcaaaatgtcatgtgtgggaaaaaggattattctta
gaaataagtaggggcgtttgataaagaagaatttaattcagaattagaag
gagagtttttctttttaaaaacaggcccgtgtgtagtactgacaaacctg
gaacttgctatgtagaccaggctggcctcgaactcagagatctgcctgcc
tctgcttcccaagtgctgggattaaaggtgtgcgtcaccacacccagccg
aggttttatcacctttatgacagttccctcacgctatccataaagcgcag
acaaggatttacataacagaaaaaaggtcaccatcttcccaaggcaggac
tgagcattagtgtaacaccactgccacctagtggtgatctcttgcagctc
gttgtaaagtagaaagaggatgtttatagagatatggacactttgtacct
tctcaatgcagtttatctctctatagaaatttatgctcatgacttctatg
agaaaaatcatactaagagcaaatgacatcttagggtaaatagtattcca
gaaataatactttcctctgattttaacgtatgccttcctaggagaagttt
tacaggaagtaatatatttaggatctgggcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78948026_78949100
seq2: B6Ng01-026J01.b_44_1111

seq1  GAATTCCTGCAGCCTCTCGTTCCTACAGAGTTCTTTAACCTTCACCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGCCTCTCGTTCCTACAGAGTTCTTTAACCTTCACCTTCT  50

seq1  ATCCCAAGGATTTGACTCTCCTCAAGAATTTCTAAGAAACCATTTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGGATTTGACTCTCCTCAAGAATTTCTAAGAAACCATTTGTCAG  100

seq1  GAACTCCATGAGAGATAAATTCCCCTAACAGGCTAACCTATTAGCCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCATGAGAGATAAATTCCCCTAACAGGCTAACCTATTAGCCAGTT  150

seq1  AACTCCATAGAGTAGTTTCCACAAAACCAGTTTGATCACAATGCCACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATAGAGTAGTTTCCACAAAACCAGTTTGATCACAATGCCACTTA  200

seq1  AACGCAGTGAGAAACCAGGCCTTATTATTAGTGACTCCCAAGGAACTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGTGAGAAACCAGGCCTTATTATTAGTGACTCCCAAGGAACTGTC  250

seq1  ACAGAATTGGGAAATAGGCATTAGCTGGAGTCCAAGCATATTTCTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGGGAAATAGGCATTAGCTGGAGTCCAAGCATATTTCTGCTGA  300

seq1  TCCACAGTATCTTCTGATTCACTATTTTCATATGCTTTCTGGGGCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTATCTTCTGATTCACTATTTTCATATGCTTTCTGGGGCCTTGG  350

seq1  CCTGAGAAATTGCAACCAAGCCAAGAGCAGACAAGGAATTCAATGTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAATTGCAACCAAGCCAAGAGCAGACAAGGAATTCAATGTTGGT  400

seq1  ACCCTGGAGAAAACAGGGGCTCCCAGGTATGATGTCATCAGTTGCTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAGAAAACAGGGGCTCCCAGGTATGATGTCATCAGTTGCTAAAA  450

seq1  AAATTAAGTTAGGTAAGTGTGAGCTGTCTGTAGTGGAGTAAGCAGAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGTTAGGTAAGTGTGAGCTGTCTGTAGTGGAGTAAGCAGAGGTG  500

seq1  GCTTGGAGCAAAGCAGAAGTCAACGTAGGGCACAACCAAAGCAAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGCAAAGCAGAAGTCAACGTAGGGCACAACCAAAGCAAAACCTT  550

seq1  CAGATAGCAGAAGGGCCGAGTTGATCAAATACAGAGTTGAAGCCAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCAGAAGGGCCGAGTTGATCAAATACAGAGTTGAAGCCAAAAGG  600

seq1  ATGCCATGTCTCCCAAGGCAAATGGCTTTCAGGTAAGCCTTCTTCAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTCTCCCAAGGCAAATGGCTTTCAGGTAAGCCTTCTTCAATGC  650

seq1  GGCTGAAAGGACACATCTGTCCCCATCGTTCAAGGCAAAGGGCTTCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGGACACATCTGTCCCCATCGTTCAAGGCAAAGGGCTTCACTT  700

seq1  CCGGAAGGACTTAATCTCTAGGTCTGAGGTATTTAAGAGCCATTGAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGGACTTAATCTCTAGGTCTGAGGTATTTAAGAGCCATTGAGGGA  750

seq1  CAGCTGTGTCCTAATAAACATTCTATTTTTGGAGCCTGGCTCTCCAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTCCTAATAAACATTCTATTTTTGGAGCCTGGCTCTCCAGAGT  800

seq1  GCCTCATGATTAGTCTGACACAGGCTAAGAGGAAGTCAGGAAGCTTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGATTAGTCTGACACAGGCTAAGAGGAAGTCAGGAAGCTTAGCA  850

seq1  AGTGTTGAGAGCCGTACAAGTGGTGAGACTGTTTCCGTCACTCTCATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAGAGCCGTACAAGTGGTGAGACTGTTTCCGTCACTCTCATCTG  900

seq1  GGACACTGTGCCCTGTACTAAGCAGGGATGGGTTTCAGGCAACAGAGCTA  950
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GGACACTGTGCCCTGTACTAAGCA-GGATGGGTTTCA-GCAACAGAGCTA  948

seq1  AGTGAAAATCCAGGCTGGGGCGGGGGGCTCCACATCCCAAAGACAGCACA  1000
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAT-CAAGCTGGGGCGGGGGGCTCCACATCCCAAAGACAGCACA  997

seq1  CAAATGCAGCAGGTGCCAAACAGTTCAACCCTGAGCATGAGAGGTGACCC  1050
      ||||||||||||||| |||||||||| ||||||||||||| |||||| ||
seq2  CAAATGCAGCAGGTG-CAAACAGTTC-ACCCTGAGCATGAAAGGTGA-CC  1044

seq1  AACACGCAGGCCAAATGGAGCATCA  1075
      |||||||| ||||||||||||||||
seq2  AACACGCA-GCCAAATGGAGCATCA  1068

seq1: chr14_79067978_79069146
seq2: B6Ng01-026J01.g_67_1200 (reverse)

seq1  AAATGCCCAGTAATTTCTAATATATTATTTTACTTACACTGGTTTATAAT  50
      ||||||||||    | |||    | ||| |||||| |     | || || 
seq2  AAATGCCCAG---ATCCTA----AATATATTACTTCC-----TGTAAAA-  37

seq1  TTTCTTTTCTTAAGAAAAGGCATAAAGGTAAAATCAGATGGAAAGTAATT  100
         ||| || || |  ||||||| | | |||||||||| ||||||| |||
seq2  ---CTTCTCCTAGG--AAGGCAT-ACGTTAAAATCAGA-GGAAAGT-ATT  79

seq1  ATATTCTGTGAATACTTATTTAACCCCTAAGATGTTCATTCTGCTCTTAG  150
      || ||||| |||||| ||||||  |||||||||| ||||| |||||||||
seq2  AT-TTCTG-GAATAC-TATTTA--CCCTAAGATG-TCATT-TGCTCTTAG  122

seq1  TATGTATCTTCTCCATAGAGGTTCATGAGCATAAATTTCTAATTAGAGAG  200
      ||||  | |||| |||||| | |||||||||||||||||||  |||||||
seq2  TATGATTTTTCT-CATAGAAG-TCATGAGCATAAATTTCTA--TAGAGAG  168

seq1  ATAAAACTGCATTGAGAAGGTACAAAGTGTCCATATCTCTTATAAACATC  250
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AT-AAACTGCATTGAGAAGGTACAAAGTGTCCATATCTC-TATAAACATC  216

seq1  CTCTTTCCTACTTTACAACGAGCTGCAAGAGATCACCACTAGGTGGCAGT  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTT-CTACTTTACAACGAGCTGCAAGAGATCACCACTAGGTGGCAGT  265

seq1  GGTGTTACACTAATGCTCAGTCCTGCCTTGGGAAGATGGTGACCTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTACACTAATGCTCAGTCCTGCCTTGGGAAGATGGTGACCTTTTTT  315

seq1  CTGTTATGTAAATCCTTGTCTGCGCTTTATGGATAGCGTGAGGGAACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGTAAATCCTTGTCTGCGCTTTATGGATAGCGTGAGGGAACTGT  365

seq1  CATAAAGGTGATAAAACCTCGGCTGGGTGTGGTGACGCACACCTTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGTGATAAAACCTCGGCTGGGTGTGGTGACGCACACCTTTAATC  415

seq1  CCAGCACTTGGGAAGCAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAAGCAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCC  465

seq1  TGGTCTACATAGCAAGTTCCAGGTTTGTCAGTACTACACACGGGCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACATAGCAAGTTCCAGGTTTGTCAGTACTACACACGGGCCTGTT  515

seq1  TTTAAAAAGAAAAACTCTCCTTCTAATTCTGAATTAAATTCTTCTTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGAAAAACTCTCCTTCTAATTCTGAATTAAATTCTTCTTTATC  565

seq1  AAACGCCCCTACTTATTTCTAAGAATAATCCTTTTTCCCACACATGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCCCTACTTATTTCTAAGAATAATCCTTTTTCCCACACATGACAT  615

seq1  TTTGATGTAACCGCTTTCCCATGTGGCCACCATGATAAAGCTGTTTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTAACCGCTTTCCCATGTGGCCACCATGATAAAGCTGTTTTGAT  665

seq1  GGGGGCATGTTGATGGGGCCTAAAATTAACTACTGAACACTGTCAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATGTTGATGGGGCCTAAAATTAACTACTGAACACTGTCAACTTT  715

seq1  TTAACTAGTAACTCATGTGCTAAACAGATGACTCCGCACCTTTCCTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGTAACTCATGTGCTAAACAGATGACTCCGCACCTTTCCTGGCC  765

seq1  CTCAGTAAACCTGGCACTCACCATGCTCCCAGGTCTAGTTCAGGGCTACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAACCTGGCACTCACCATGCTCCCAGGTCTAGTTCAGGGCTACG  815

seq1  GAGGGGTTTGGGGTCACTGGGGTGGCCAAGAACAGGACAGAAAAGAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTTGGGGTCACTGGGGTGGCCAAGAACAGGACAGAAAAGAATGA  865

seq1  AGTGCAACGGAGACGATGGACAGACCACACACAGCACCGGGAGTCACATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACGGAGACGATGGACAGACCACACACAGCACCGGGAGTCACATG  915

seq1  CTACCATTCATATGGATGTCAGGAAGAGCCAGTCCTCTTTGTGTGTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTCATATGGATGTCAGGAAGAGCCAGTCCTCTTTGTGTGTGTGT  965

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATT  1015

seq1  TCTGGAATTTTAGTCATGTATTTCAATATTCTCAAGGTTTCTAGTTCTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTTTAGTCATGTATTTCAATATTCTCAAGGTTTCTAGTTCTTC  1065

seq1  CCCAAGAGAATATCTAGGTCCTGATGACACAGGGATACTCATTTAGACAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGAATATCTAGGTCCTGATGACACAGGGATACTCATTTAGACAT  1115

seq1  CTGCCAGCTCTCTGAATTC  1169
      |||||||||||||||||||
seq2  CTGCCAGCTCTCTGAATTC  1134