BAC Information

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BAC

Clone NameB6Ng01-027H24
Chromosome14 (Build37)
Map Location 9,498,172 - 9,650,479
singlet/doubletdoublet
Overlap gene4930452B06Rik, LOC100041948
Upstream geneENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005
Downstream geneFhit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027H24.bB6Ng01-027H24.g
ACCDH858226DH858227
length1,056942
definitionDH858226|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H24, 5' end.DH858227|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,649,409 - 9,650,479)(9,498,172 - 9,499,120)
sequence
gaattcttttatatatgtatatatgtgtatatatgtctagtcattgtata
tgtgtgtgtatcctatatattttccataaatttatatatatataaactca
gtatactgtggtagataataaaagcattttacttattatcttcaagagtc
tatcatagctgatctattctttgatattacaagttaaaggtaagatccca
tcaagatcacaagttagagatagataatattgtttcccacattggaaaga
tactactggggaaagtggcttagtcctcttagcaacccttgaggtagaca
tcatataccactcaaacagtagataggattggagcagagctgccagaact
gaagtgttctaacttatgagtgaggcattgtgatcatacatacagctagt
tattggaaacattgcagaagagaacctcaaatttcatcaacaagtcattt
aacactgacttcttctcttctgcagtatctctggtttttgaaactctggt
ctataaactcctctatttaccaccttctcaaacctatctttgatgtttga
tcttcataattaatatatttatgcttatgccaccataatgtatcaagcag
cctcttggtggggtcaagtttgtgagccattttcatgtgtaaatatcctt
gcaatgtctttaaggaggcagaccagtgtcagaatttacaaaggcccatg
tgaagagggtaataaaaggctaaacatagattaaagaaaaaaaaaagata
tagcaatatactacagaagcaatagcaagtgcccagtgcctttctcctct
gagagagaaccacatcagtctttggcagcacagatcatttctctcacatc
agtgaacaagtaagtgaatcgctgtggaggtacttacagccagaggaaga
caatttagacagataaattttccttatctttaacaggtcacccagatagt
cttgtgtgaagaacaggaaacagatataaaaattagtattatttttcaaa
tttgtttcattttgaattttatctgatggtgtatttggtctacatatatt
tttgta
gaattcatttacttttctacttagctctgagataccagagggcatcaaga
gtgaaaaccccaggtgtttaacaactcaggatttctgggtcctgtgctgg
agattctgattccgggtgtgtggaatggaagagggtcatgacctgctttt
taatcagaaccattgattctgcacaggaaagcactgagctggagcgtgca
cacctcaaggtcatgacaacttatccactatttttcatccccggagtgga
agattcacaccagaacaccggcgagctcaccccggaggagaaagccagtg
tggaagtccttttgggttacctggtactcatttttgaacattcccgcaga
gggccctgtgtttggcaggcacagagtttgctggctgaagaaggacaggc
agagccggctctgggccccgctggctcgggctcgcctccgcacctcgcgc
ctgcagtcagctgagcctccagccgccgacccgcgccattctggtccccg
cccggggcgccgcggcagggggtggcacagcggcctgcgggctccgccga
gtgactgcgtgtaacctacgtgaccgccctgcagctacctccgggcacaa
accgaccgcgcccgcgggaaccgcgcagcccgctccggggctttgctact
gcgcccattggctccccggaggcgcctgcgcactgagcccttcagagtgc
tttccctctggctgctgagccgttgcccaggcaactgaggggcttgtcca
cctgtaacagctggtaactcaccagcccaaaggtgtagggttccttaagc
cagggtctcactcagatctggtatcttcacatcgcctctaagtagtaact
ctggtaactgctgttggtaatgtggtcttgattcctatcttccatacttg
ggttcttgagaaataacaaaatgttatttgggatagcaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_9649409_9650479
seq2: B6Ng01-027H24.b_41_1096 (reverse)

seq1  TACAAATATATATGTAGACAAAATA-ACCATTCAGATAAAATTTCAAAAT  49
      |||||| |||||||||||| ||||| |||| |||||||||| ||||||||
seq2  TACAAAAATATATGTAGACCAAATACACCA-TCAGATAAAA-TTCAAAAT  48

seq1  GGAACAAACTCTGAAAAATTAAATACTGAATTTTTATATTCTGTTTCCTG  99
      | |||||| | ||||||||  |||||| |||||||||| |||||||||||
seq2  GAAACAAA-TTTGAAAAAT--AATACT-AATTTTTATA-TCTGTTTCCTG  93

seq1  TTCTTCAACACAGGACTATCTGGGTGACCCTGTTAAAAGATTAGGGAAAT  149
      |||||| ||||| |||||||||||||| |||||| ||||| || ||||| 
seq2  TTCTTC-ACACAAGACTATCTGGGTGA-CCTGTT-AAAGA-TAAGGAAAA  139

seq1  TTTATTCTTGTCTTAAATTGTCTTCCTCTGGCTGTAAGTAACCTCCACAG  199
      |||||   |||| |||||||||||||||||||||||||| ||||||||||
seq2  TTTAT--CTGTC-TAAATTGTCTTCCTCTGGCTGTAAGT-ACCTCCACAG  185

seq1  CGATTCACTTACCTTGTTCACTGATGTGAGAGAAATGATCTGTGCTGCCA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGATTCACTTA-CTTGTTCACTGATGTGAGAGAAATGATCTGTGCTGCCA  234

seq1  AAGACTGATGTGGTTCTCTCTCAGGGGAGAAAGGCACTGGGCACTTGCTA  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGACTGATGTGGTTCTCTCTCAGAGGAGAAAGGCACTGGGCACTTGCTA  284

seq1  TTGCTTCTGTAGTATATTGCTATATCTTTTTTTTTTCTTTAATCTATGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGTAGTATATTGCTATATCTTTTTTTTTTCTTTAATCTATGTT  334

seq1  TAGCCTTTTATTACCCTCTTCACATGGGCCTTTGTAAATTCTGACACTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTTATTACCCTCTTCACATGGGCCTTTGTAAATTCTGACACTGG  384

seq1  TCTGCCTCCTTAAAGACATTGCAAGGATATTTACACATGAAAATGGCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTTAAAGACATTGCAAGGATATTTACACATGAAAATGGCTCA  434

seq1  CAAACTTGACCCCACCAAGAGGCTGCTTGATACATTATGGTGGCATAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGACCCCACCAAGAGGCTGCTTGATACATTATGGTGGCATAAGC  484

seq1  ATAAATATATTAATTATGAAGATCAAACATCAAAGATAGGTTTGAGAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATTAATTATGAAGATCAAACATCAAAGATAGGTTTGAGAAGG  534

seq1  TGGTAAATAGAGGAGTTTATAGACCAGAGTTTCAAAAACCAGAGATACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAGAGGAGTTTATAGACCAGAGTTTCAAAAACCAGAGATACTG  584

seq1  CAGAAGAGAAGAAGTCAGTGTTAAATGACTTGTTGATGAAATTTGAGGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGAAGAAGTCAGTGTTAAATGACTTGTTGATGAAATTTGAGGTT  634

seq1  CTCTTCTGCAATGTTTCCAATAACTAGCTGTATGTATGATCACAATGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCAATGTTTCCAATAACTAGCTGTATGTATGATCACAATGCCT  684

seq1  CACTCATAAGTTAGAACACTTCAGTTCTGGCAGCTCTGCTCCAATCCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATAAGTTAGAACACTTCAGTTCTGGCAGCTCTGCTCCAATCCTAT  734

seq1  CTACTGTTTGAGTGGTATATGATGTCTACCTCAAGGGTTGCTAAGAGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTGAGTGGTATATGATGTCTACCTCAAGGGTTGCTAAGAGGAC  784

seq1  TAAGCCACTTTCCCCAGTAGTATCTTTCCAATGTGGGAAACAATATTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACTTTCCCCAGTAGTATCTTTCCAATGTGGGAAACAATATTATC  834

seq1  TATCTCTAACTTGTGATCTTGATGGGATCTTACCTTTAACTTGTAATATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAACTTGTGATCTTGATGGGATCTTACCTTTAACTTGTAATATC  884

seq1  AAAGAATAGATCAGCTATGATAGACTCTTGAAGATAATAAGTAAAATGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGATCAGCTATGATAGACTCTTGAAGATAATAAGTAAAATGCT  934

seq1  TTTATTATCTACCACAGTATACTGAGTTTATATATATATAAATTTATGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATCTACCACAGTATACTGAGTTTATATATATATAAATTTATGGA  984

seq1  AAATATATAGGATACACACACATATACAATGACTAGACATATATACACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAGGATACACACACATATACAATGACTAGACATATATACACAT  1034

seq1  ATATACATATATAAAAGAATTC  1071
      ||||||||||||||||||||||
seq2  ATATACATATATAAAAGAATTC  1056

seq1: chr14_9498172_9499120
seq2: B6Ng01-027H24.g_67_1008

seq1  GAATTCATTTACTTTTCTACTTAGCTCTGAGATACCAGAGGGCATCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACTTTTCTACTTAGCTCTGAGATACCAGAGGGCATCAAGA  50

seq1  GTGAAAACCCCAGGTGTTTAACAACTCAGGATTTCTGGGTCCTGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACCCCAGGTGTTTAACAACTCAGGATTTCTGGGTCCTGTGCTGG  100

seq1  AGATTCTGATTCCGGGTGTGTGGAATGGAAGAGGGTCATGACCTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGATTCCGGGTGTGTGGAATGGAAGAGGGTCATGACCTGCTTTT  150

seq1  TAATCAGAACCATTGATTCTGCACAGGAAAGCACTGAGCTGGAGCGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAACCATTGATTCTGCACAGGAAAGCACTGAGCTGGAGCGTGCA  200

seq1  CACCTCAAGGTCATGACAACTTATCCACTATTTTTCATCCCCGGAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAAGGTCATGACAACTTATCCACTATTTTTCATCCCCGGAGTGGA  250

seq1  AGATTCACACCAGAACACCGGCGAGCTCACCCCGGAGGAGAAAGCCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACACCAGAACACCGGCGAGCTCACCCCGGAGGAGAAAGCCAGTG  300

seq1  TGGAAGTCCTTTTGGGTTACCTGGTACTCATTTTTGAACATTCCCGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCCTTTTGGGTTACCTGGTACTCATTTTTGAACATTCCCGCAGA  350

seq1  GGGCCCTGTGTTTGGCAGGCACAGAGTTTGCTGGCTGAAGAAGGACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGTTTGGCAGGCACAGAGTTTGCTGGCTGAAGAAGGACAGGC  400

seq1  AGAGCCGGCTCTGGGCCCCGCTGGCTCGGGCTCGCCTCCGCACCTCGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCGGCTCTGGGCCCCGCTGGCTCGGGCTCGCCTCCGCACCTCGCGC  450

seq1  CTGCAGTCAGCTGAGCCTCCAGCCGCCGACCCGCGCCATTCTGGTCCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCAGCTGAGCCTCCAGCCGCCGACCCGCGCCATTCTGGTCCCCG  500

seq1  CCCGGGGCGCCGCGGCAGGGGGTGGCACAGCGGCCTGCGGGCTCCGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGCGCCGCGGCAGGGGGTGGCACAGCGGCCTGCGGGCTCCGCCGA  550

seq1  GTGACTGCGTGTAACCTACGTGACCGCCCTGCAGCTACCTCCGGGCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGCGTGTAACCTACGTGACCGCCCTGCAGCTACCTCCGGGCACAA  600

seq1  ACCGACCGCGCCCGCGGGAACCGCGCAGCCCGCTCCGGGGCTTTGCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACCGCGCCCGCGGGAACCGCGCAGCCCGCTCCGGGGCTTTGCTACT  650

seq1  GCGCCCATTGGCTCCCCGGAGGCGCCTGCGCACTGAGCCCTTCAGAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCATTGGCTCCCCGGAGGCGCCTGCGCACTGAGCCCTTCAGAGTGC  700

seq1  TTTCCCTCTGGCTGCTGAGCCGTTGCCCAGGCAACTGAGGGGCTTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTGGCTGCTGAGCCGTTGCCCAGGCAACTGAGGGGCTTGTCCA  750

seq1  CCTGTAACAGCTGGTAACTCACCAGCCCAAAAGGTGTAGGGTTCCTTAAG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGTAACAGCTGGTAACTCACCAGCCC-AAAGGTGTAGGGTTCCTTAAG  799

seq1  CCAGGGTCTCACTCAGATCTTGTATCTTCACATCGCCTCTAAGTAGTAAC  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGGGTCTCACTCAGATCTGGTATCTTCACATCGCCTCTAAGTAGTAAC  849

seq1  TCTGGTAACTGCTGTTTGGTAAGGTGGTCTTTGATTCCTATCCTCCCATA  900
      |||||||||||||| ||||||| |||||| ||||||||||| || |||||
seq2  TCTGGTAACTGCTG-TTGGTAATGTGGTC-TTGATTCCTAT-CTTCCATA  896

seq1  CTTGGGTTCTTTGAGAAATAACAAAATGTTAGTTTGGGAATAGCTAGGA  949
      ||||||||| ||||||||||||||||||||| |||||| ||||| ||||
seq2  CTTGGGTTC-TTGAGAAATAACAAAATGTTA-TTTGGG-ATAGCAAGGA  942