BAC Information

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BAC

Clone NameB6Ng01-027K18
Chromosome16 (Build37)14 (Build37)
Map Location 57,051,819 - 57,051,95117,820,153 - 17,820,240
singlet/doubletsingletsinglet
Overlap gene2310005G13Rik
Upstream geneSenp7, Impg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036
Downstream geneTomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342, LOC100043477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K18.bB6Ng01-027K18.g
ACCDH858354DH858355
length88488
definitionDH858354|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K18, 5' end.DH858355|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,051,819 - 57,051,951)(17,820,153 - 17,820,240)
sequence
gaattctacatttcaatcagcaggcagcaggaagaatgactaagacctta
aggcctgcctccacagtgatacacttcctccaacaagaccacacctccta
tagtgccattccctgcagaaccaaccattcaaacatatgagtcaatgggg
gccatgcctattcttttttttttttttcagtttttaaaatctatttggaa
tattaaacaagatagaagcggagaaaaatctcttatgacgtcctctatga
aaggaaattgtaacaagttcctgattagacagaaaccattccatctccaa
gggagaatacacagtataattgtagcttcatagaatgaattgggtaatgt
ttcttttgtttctattttgtggaatagtttgaagagtattggtattaggt
tttctttgaaggtctgatagaattctgctctatagccatcttatcctggg
ctttttttggttgggagacttttaatgactgtctctgtgccctctggttt
gtctgtctaatggtttatccatcttgttgatgttcttaaagaaccagcac
ctggtttctttgattctttgtatagttctttttgtttccacttggtttga
tttcagcactgagttttattatttcctactctctactcctcttgggtgta
tttgcttctttttgtcctagagcttccaggtgtgctgttaagctgctagt
atatgctctctccagtttctttttggaggcactcagagctatgagttttc
ctcttaccactgctttcattgtgtcccataagttttggtatgttcccttc
attttcatatttgtaagtcttaaattctttatttcttccttgacaagtta
tcattgagtgagcattgtcagcttccatgtgtat
acctgaacaatctggggataataggagctgagatggagagggcctaggaa
agggggaggtgaagggagatggaggacattagggatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_57051819_57051951
seq2: B6Ng01-027K18.b_812_929 (reverse)

seq1  ATACACATGGAAGCTGAACAACACTCTACTCAATGATAACTTGGTCAAGG  50
      |||||||||||||||| ||||  ||| ||||||||||||||| |||||||
seq2  ATACACATGGAAGCTG-ACAATGCTC-ACTCAATGATAACTT-GTCAAGG  47

seq1  AGGAAATAAAGAAAGAAATTAAAGACTATTTAGAATTTAATGAAAATGAA  100
      | |||||||||     |||| |||||   ||| || |  |||||||||||
seq2  AAGAAATAAAG-----AATTTAAGAC---TTACAAAT--ATGAAAATGAA  87

seq1  GATATAACATATCCAAACTTATGGGACACAATG  133
      |    |||||| | |||||||||||||||||||
seq2  G--GGAACATACCAAAACTTATGGGACACAATG  118

seq1: chr14_17820153_17820240
seq2: B6Ng01-027K18.g_71_158 (reverse)

seq1  TCATCCCTAATGTCCTCCATCTCCCTTCACCTCCCCCTTTCCTAGGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTAATGTCCTCCATCTCCCTTCACCTCCCCCTTTCCTAGGCCCT  50

seq1  CTCCATCTCAGCTCCTATTATCCCCAGATTGTTCAGGT  88
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCAGCTCCTATTATCCCCAGATTGTTCAGGT  88