BAC Information

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BAC

Clone NameB6Ng01-029D07
Chromosome14 (Build37)
Map Location 7,963,120 - 8,192,245
singlet/doubletdoublet
Overlap geneLOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947
Upstream geneLOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456
Downstream geneLOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029D07.bB6Ng01-029D07.g
ACCDH859471DH859472
length1,191677
definitionDH859471|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D07, 5' end.DH859472|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,963,120 - 7,964,338)(8,191,571 - 8,192,245)
sequence
gaattctgtaaccaaaggtgtgctctataatggctcaccaatggagatct
caaagtaacagtaataaaaaggaattcgtgagcagcaggggagaaatatt
tgaaaatctaaaacactaaagaaagtcaaggaactttttatgaaccaaat
gagacaatgtgctatgtatttgaaattgtagtaggcattttgagaaatag
attttgatgcaggagacctgccataaattccaagtcagattgggcctgag
gtatgctagaggactccctcaaaacaaagaaacacactgaacaaagaaaa
gacaagtggatgtcccttaggtcagagaaccactgtgaaagctttgaact
aggagaagtagttagtaggtcagatactattttaaattggggattccttg
aaagtttctcagaagccatgatctttcaccagggttttcccctgagctgc
ctttagtgggaaatgaggcagctttcctttctttgcctacacagtatttc
cacccatcctgggtttcctctacagctgcagatgctgtagagttgcagtc
atttacttagcaggaaccagcttagactggctttgcttttcaaagttaca
ggccttaggagctggctactgaattctgtgttgatcagagcgggctgcaa
agctaggtttttataagtaagatacctgcactttaaggaattaattgcct
ggctcctggatgtgaagctgtgcaatgtgtctttaagcaatcagcatcct
ttgaaagagtaataaatggaacccgtattcttcaccaaataggcatgggc
cttagaccacctttcacttcagtcacccttgactggattctgggacatgt
tgctatataaaacctgaaagtacggcttttgagatggctcaatggggaag
ggcactgactgttcttccaaggtcctgagttcaaatcccagtaacacatg
gtggctcacagccatccctaacgagatcttgacttcctcttctgatatgt
ctgaagacgctacagtgtacttacatataataaataatatcctttaaaaa
atctggaagttaatgtgtggctggaatacgatactggccaagtgactttt
cctctatagagttgtggggaagaacattagatctatatcacatttgttca
ctggccttgcctcttaattaaaggaagttgaactgggttag
gaattcttgtagggtcagatttttaactgactagagacaaaactattgat
tctcattgaaatctttagagcaaatgtaagggatatggtatatggaggta
aggaggacattgctgtataaaatccttgtgtttatgacctttttctgctc
ttggtgaattgtgaaggaccactgggaggtcaggtggctcactgtgtctt
ctaagcattccaggttgttttcctcattgcctgccaccattacatttcct
gctacctctgctcagtaaagctttgccttgtagtttgtcttggattttac
tcattgagagattgagttgcttggagctgaacttgcatccagcagaattc
ccatagctgtggagcaaaccaggcctgtttcaggagcccattgagggtct
tgataatctaaagaactcacactatcttatctgtgtagatattcagcatg
actgttcttcaacatcattttgtcagagttaaaatcagcctcagtggggg
ttgggagaaatgaggacatacattccaagaactcaaaaaggtcaacaaac
tgaagtgcccaagtaaggacgccttattcccacctgggagagagaagaaa
gcaatcaccagtgggagaaggagggaaggacctgggagggaaagtgacag
gggacagtgggggagttggggagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_7963120_7964338
seq2: B6Ng01-029D07.b_45_1235

seq1  GAATTCTGTAACCAAAGGTGTGCTCTATAATGGCTCACCAATGGAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACCAAAGGTGTGCTCTATAATGGCTCACCAATGGAGATCT  50

seq1  CAAAGTAACAGTAATAAAAAGGAATTCGTGAGCAGCAGGGGAGAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACAGTAATAAAAAGGAATTCGTGAGCAGCAGGGGAGAAATATT  100

seq1  TGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATGAACCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATGAACCAAAT  150

seq1  GAGACAATGTGCTATGTATTTGAAATTGTAGTAGGCATTTTGAGAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATGTGCTATGTATTTGAAATTGTAGTAGGCATTTTGAGAAATAG  200

seq1  ATTTTGATGCAGGAGACCTGCCATAAATTCCAAGTCAGATTGGGCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGCAGGAGACCTGCCATAAATTCCAAGTCAGATTGGGCCTGAG  250

seq1  GTATGCTAGAGGACTCCCTCAAAACAAAGAAACACACTGAACAAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTAGAGGACTCCCTCAAAACAAAGAAACACACTGAACAAAGAAAA  300

seq1  GACAAGTGGATGTCCCTTAGGTCAGAGAACCACTGTGAAAGCTTTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTGGATGTCCCTTAGGTCAGAGAACCACTGTGAAAGCTTTGAACT  350

seq1  AGGAGAAGTAGTTAGTAGGTCAGATACTATTTTAAATTGGGGATTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGTAGTTAGTAGGTCAGATACTATTTTAAATTGGGGATTCCTTG  400

seq1  AAAGTTTCTCAGAAGCCATGATCTTTCACCAGGGTTTTCCCCTGAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTCAGAAGCCATGATCTTTCACCAGGGTTTTCCCCTGAGCTGC  450

seq1  CTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTTC  500

seq1  CACCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTAGAGTTGCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTAGAGTTGCAGTC  550

seq1  ATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGTTACA  600

seq1  GGCCTTAGGAGCTGGCTACTGAATTCTGTGTTGATCAGAGCGGGCTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGGAGCTGGCTACTGAATTCTGTGTTGATCAGAGCGGGCTGCAA  650

seq1  AGCTAGGTTTTTATAAGTAAGATACCTGCACTTTAAGGAATTAATTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTTTTTATAAGTAAGATACCTGCACTTTAAGGAATTAATTGCCT  700

seq1  GGCTCCTGGATGTGAAGCTGTGCAATGTGTCTTTAAGCAATCAGCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGGATGTGAAGCTGTGCAATGTGTCTTTAAGCAATCAGCATCCT  750

seq1  TTGAAAGAGTAATAAATGGAACCCGTATTCTTCACCAAATAGGCATGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGTAATAAATGGAACCCGTATTCTTCACCAAATAGGCATGGGC  800

seq1  CTTAGACCACCTTTCACTTCAGTCACCCTTGACTGGATTCTGGGACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCACCTTTCACTTCAGTCACCCTTGACTGGATTCTGGGACATGT  850

seq1  TGCTATATAAAACCTGAAAGTACGGCTTTTGAGATGGCTCAATGGGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATAAAACCTGAAAGTACGGCTTTTGAGATGGCTCAATGGGGAAG  900

seq1  GGCACTGACTGTTCTTCCAAAGGTCCTGAGTTCAAATCCCAGTAACCACA  950
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GGCACTGACTGTTCTTCC-AAGGTCCTGAGTTCAAATCCCAGTAA-CACA  948

seq1  TGGTGGCTCACAGCCATCCCTAACGAGATC-TGACTTCCTCTTCTGATAT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGTGGCTCACAGCCATCCCTAACGAGATCTTGACTTCCTCTTCTGATAT  998

seq1  GTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTT  1049
      |||||||||| ||||||||||||||||||||||||||||   | ||| ||
seq2  GTCTGAAGAC-GCTACAGTGTACTTACATATAATAAATA---ATATCCTT  1044

seq1  AAAAAAACCTGAAAGTTTAATGTGTGGGTTGAAATACAGGATAGCTGCCA  1099
       |||||| ||| ||| ||||||||| || || |||||  |||| ||| | 
seq2  TAAAAAATCTGGAAG-TTAATGTGT-GGCTGGAATAC--GATA-CTGGCC  1089

seq1  AAGTGACCTTTCACTCTATAGAG-TGTGGGGAAGAGAACATTAGAATCAT  1148
      ||||||| |||| |||||||||| ||||||||  |||||||||| |||  
seq2  AAGTGACTTTTC-CTCTATAGAGTTGTGGGGA--AGAACATTAG-ATCTA  1135

seq1  AATCACATTTTGGTCCCAGCTTGTGCCCTCTGTCTTCTTTACATTAAAAG  1198
       |||||| |||| || |      || ||| || | ||||   | | ||||
seq2  TATCACA-TTTGTTCAC------TGGCCT-TG-CCTCTT---AATTAAAG  1173

seq1  GAAAAGTCTGAACTGGGTTAG  1219
      |  |||| |||||||||||||
seq2  G--AAGT-TGAACTGGGTTAG  1191

seq1: chr14_8191571_8192245
seq2: B6Ng01-029D07.g_67_743 (reverse)

seq1  TTCTCTCCCCAACT-CCCCACTGT-CCCTGTCACTTTCCCTCCCAGGTCC  48
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TTCTCTCCCCAACTCCCCCACTGTCCCCTGTCACTTTCCCTCCCAGGTCC  50

seq1  TTCCCTCCTTCTCCCACTGGTGATTGCTTTCTTCTCTCTCCCAGGTGGGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTTCTCCCACTGGTGATTGCTTTCTTCTCTCTCCCAGGTGGGA  100

seq1  ATAAGGCGTCCTTACTTGGGCACTTCAGTTTGTTGACCTTTTTGAGTTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCGTCCTTACTTGGGCACTTCAGTTTGTTGACCTTTTTGAGTTCT  150

seq1  TGGAATGTATGTCCTCATTTCTCCCAACCCCCACTGAGGCTGATTTTAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTATGTCCTCATTTCTCCCAACCCCCACTGAGGCTGATTTTAAC  200

seq1  TCTGACAAAATGATGTTGAAGAACAGTCATGCTGAATATCTACACAGATA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAAATGATGTTGAAGAACAGTCATGCTGAATATCTACACAGATA  250

seq1  AGATAGTGTGAGTTCTTTAGATTATCAAGACCCTCAATGGGCTCCTGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGTGAGTTCTTTAGATTATCAAGACCCTCAATGGGCTCCTGAAA  300

seq1  CAGGCCTGGTTTGCTCCACAGCTATGGGAATTCTGCTGGATGCAAGTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGGTTTGCTCCACAGCTATGGGAATTCTGCTGGATGCAAGTTCA  350

seq1  GCTCCAAGCAACTCAATCTCTCAATGAGTAAAATCCAAGACAAACTACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGCAACTCAATCTCTCAATGAGTAAAATCCAAGACAAACTACAA  400

seq1  GGCAAAGCTTTACTGAGCAGAGGTAGCAGGAAATGTAATGGTGGCAGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTTTACTGAGCAGAGGTAGCAGGAAATGTAATGGTGGCAGGCA  450

seq1  ATGAGGAAAACAACCTGGAATGCTTAGAAGACACAGTGAGCCACCTGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAAACAACCTGGAATGCTTAGAAGACACAGTGAGCCACCTGACC  500

seq1  TCCCAGTGGTCCTTCACAATTCACCAAGAGCAGAAAAAGGTCATAAACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGGTCCTTCACAATTCACCAAGAGCAGAAAAAGGTCATAAACAC  550

seq1  AAGGATTTTATACAGCAATGTCCTCCTTACCTCCATATACCATATCCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTATACAGCAATGTCCTCCTTACCTCCATATACCATATCCCTT  600

seq1  ACATTTGCTCTAAAGATTTCAATGAGAATCAATAGTTTTGTCTCTAGTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCTCTAAAGATTTCAATGAGAATCAATAGTTTTGTCTCTAGTCA  650

seq1  GTTAAAAATCTGACCCTACAAGAATTC  675
      |||||||||||||||||||||||||||
seq2  GTTAAAAATCTGACCCTACAAGAATTC  677